BAC Information

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BAC

Clone NameB6Ng01-269H24
Chromosome14 (Build37)
Map Location 57,509,933 - 57,672,607
singlet/doubletdoublet
Overlap geneZmym2, LOC100042817, B020004C17Rik, Gja3
Upstream gene9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118
Downstream geneGjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269H24.bB6Ng01-269H24.g
ACCGA072081GA072082
length8551,128
definitionB6Ng01-269H24.b B6Ng01-269H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,509,933 - 57,510,788)(57,671,490 - 57,672,607)
sequence
gaattctatgtgtaatccacctcagtgtatcttgataccctgagagagac
agacagacagacagacagacagagacagaccgtctttcttgaccatctct
cattaggaaatagattgcctggactccatgcaactgtatacaacaaggat
actcaaatccaaaagctgtgcagatctaagtacatgtaactcataaagtt
gccagtgagaaaaaaattgttgctggataaatgcataagtttgaagaatg
aggtacagagcaacattacagtatattttttttgtatataatctagacaa
ttttgttgtacctggatggatattttagttttaaaataattgactttttt
ttttttgaacatagaaatagcaagtgcatcctcattggtgcctgtgctaa
attcatcgtaaaaaagacagttgatcatcttaaagggtgaattatagcac
accttttattttgtttaaaagcatatcagtttagcaactggagaggtggc
tcagcgattaagagcactgaccatttttccagaggacctgggttcaattt
ccagcactcacatggtagctcacaactgtctataacttgtttctagagga
tctggcatcctcacacagacaaaaaaaaaaatgtaagaaatactatataa
ttcagcaaaacaccaatgcacatcaaaatgaataacttgtttaaaaaaaa
cgtatcagttctcaaatgaagttaaaatactttttgttcaccattaaaaa
tccattttagccaggcagtggtggcacatgcctttaatcccagcacttgg
gaaggcagaggcaggtgattctgagttcgaggccagcctgtctatcagag
tgagt
gaattctatttaaaaattaagtgttttgttaacttgcctttcttcaatac
aaagcagtaaagacctttagttctttttttaaacatttttttttagattt
ttgcctaaatatgtgcattatagatgcttgcctggtgcccttggaggtca
ggagagggcttcagatgccccggaattggagttatagatgtgagccacca
tgtgggtgctgggagcctttgaaactaccatcctctgaagagcaacaagc
acttgtaaccactgagccacctctccagccccaaggcctttataatcaaa
tgagcacttgttgctactacttacaaatcaaaattagctctctctggtgt
ctctacagtcccagctaccagggaggctgaggtggaggattgtttcagca
caggagtccagagtcaggctaaatagcaccatctggtcaagggcttgcct
tgcaagtgtgggggtttaatacctagaccctatgtatcaatgccaggcag
gagcttgcagaggtggctcagcaggtaaaagcatttgctatgccggcctg
agagcccgagctcagttccctagcacccacataaaaagccgggtgtggcc
gtgagcatacccatgccccgtcacggacagaatgggggagtccctgtggc
ttgctccaggctcagagggagaccctgactcctgagagtaaagtagtcaa
cgacaaaacaagacacatagccacatagtgtcctctctggtctctgcatg
cactgatgtatgttgtccaccccctcccataaaatacatacactcaacac
caaaaaaaattaactaaaaaaaaaaaaaaaaaaacgtccagcatggttgt
cacactcgtgctcctagtggtgggagaaaccgactgcagatgcttgagac
ttgctgggtctctttgctggagcaccaccagtgaagagactgtgtctcca
aaggaagttgacatccaaggttgtcctctggggaacacacataccacaac
aggtcgtaacaaatacagtaaaaggcaagtctcggcttagctaagtttca
atcccaagaagggctaaatgaacgatcattgtttcctctgaagtgaatgg
tcatgccagattcggtacttatagtccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57509933_57510788
seq2: B6Ng01-269H24.b_52_906

seq1  GAATTCTATGTGTAATCCACCTCAGTGTATCTTGATACCCTGAGAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGTAATCCACCTCAGTGTATCTTGATACCCTGAGAGAGAC  50

seq1  AGACAGACAGACAGACAGACAGAGACAGACCGTCTTTCTTGACCATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGACAGACAGACAGAGACAGACCGTCTTTCTTGACCATCTCT  100

seq1  CATTAGGAAATAGATTGCCTGGACTCCATGCAACTGTATACAACAAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGAAATAGATTGCCTGGACTCCATGCAACTGTATACAACAAGGAT  150

seq1  ACTCAAATCCAAAAGCTGTGCAGATCTAAGTACATGTAACTCATAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATCCAAAAGCTGTGCAGATCTAAGTACATGTAACTCATAAAGTT  200

seq1  GCCAGTGAGAAAAAAATTGTTGCTGGATAAATGCATAAGTTTGAAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGAGAAAAAAATTGTTGCTGGATAAATGCATAAGTTTGAAGAATG  250

seq1  AGGTACAGAGCAACATTACAGTATATTTTTTTTGTATATAATCTAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAGAGCAACATTACAGTATATTTTTTTTGTATATAATCTAGACAA  300

seq1  TTTTGTTGTACCTGGATGGATATTTTAGTTTTAAAATAATTGACTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTACCTGGATGGATATTTTAGTTTTAAAATAATTGACTTTTTT  350

seq1  TTTTTTGAACATAGAAATAGCAAGTGCATCCTCATTGGTGCCTGTGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAACATAGAAATAGCAAGTGCATCCTCATTGGTGCCTGTGCTAA  400

seq1  ATTCATCGTAAAAAAGACAGTTGATCATCTTAAAGGGTGAATTATAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCGTAAAAAAGACAGTTGATCATCTTAAAGGGTGAATTATAGCAC  450

seq1  ACCTTTTATTTTGTTTAAAAGCATATCAGTTTAGCAACTGGAGAGGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTATTTTGTTTAAAAGCATATCAGTTTAGCAACTGGAGAGGTGGC  500

seq1  TCAGCGATTAAGAGCACTGACCATTTTTCCAGAGGACCTGGGTTCAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGATTAAGAGCACTGACCATTTTTCCAGAGGACCTGGGTTCAATTT  550

seq1  CCAGCACTCACATGGTAGCTCACAACTGTCTATAACTTGTTTCTAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCACATGGTAGCTCACAACTGTCTATAACTTGTTTCTAGAGGA  600

seq1  TCTGGCATCCTCACACAGACAAAAAAAAAAATGTAAGAAATACTATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATCCTCACACAGACAAAAAAAAAAATGTAAGAAATACTATATAA  650

seq1  TTCAGCAAAACACCAATGCACATCAAAATGAATAACTTGTTTAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAAACACCAATGCACATCAAAATGAATAACTTGTTTAAAAAAAA  700

seq1  CGTATCAGTTCTCAAATGAAGTTAAAATACTTTTTGTTCACCATTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCAGTTCTCAAATGAAGTTAAAATACTTTTTGTTCACCATTAAAAA  750

seq1  TCCATTTTAGCCAGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTAGCCAGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGG  800

seq1  G-AGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTA-CA  848
      | |||||||||||||||   ||||||||||||||||||||| ||||| ||
seq2  GAAGGCAGAGGCAGGTG--ATTCTGAGTTCGAGGCCAGCCT-GTCTATCA  847

seq1  AAGTGAGT  856
       |||||||
seq2  GAGTGAGT  855

seq1: chr14_57671490_57672607
seq2: B6Ng01-269H24.g_66_1193 (reverse)

seq1  CGGAC--TAAGTACCGAATCCTGGCATGAACACTTCACCTCTCAGAGGAA  48
      |||||  |||||||||||| ||||||||| || |||||   |||||||||
seq2  CGGACTATAAGTACCGAAT-CTGGCATGACCA-TTCAC--TTCAGAGGAA  46

seq1  ACAATGAATCCGTTTTCATTTTGACCTTCTGGGATTTGAAAACCTAGCTA  98
      |||||| |||    ||||||| | |||||| ||  ||| |||| ||||||
seq2  ACAATG-ATC---GTTCATTTAGCCCTTCTTGGGATTG-AAACTTAGCTA  91

seq1  --GCGAGAACTGCTTTTAACTTTATTTTGTTACGAC----TGTGTGTATG  142
         |||||  ||| ||| ||| || |||||||||||    |||| |||||
seq2  AGCCGAGACTTGCCTTTTACTGTA-TTTGTTACGACCTGTTGTG-GTATG  139

seq1  TGTGT--CCCAGAGGACAACCTTGGATGTCA--CTCCTTTGGAGACACAG  188
      |||||  ||||||||||||||||||||||||   ||||||||||||||||
seq2  TGTGTTCCCCAGAGGACAACCTTGGATGTCAACTTCCTTTGGAGACACAG  189

seq1  TCTC-TCACTGGTGGTGCT-CAGCAAGGAGA-CCAGCAAGTCTCAAGCAT  235
      |||| |||||||||||||| |||||| |||| ||||||||||||||||||
seq2  TCTCTTCACTGGTGGTGCTCCAGCAAAGAGACCCAGCAAGTCTCAAGCAT  239

seq1  CTGCAGTCGGTTTCT-CCACCACTAGGAGCACGAGTGTGAC-ACCATGCT  283
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  CTGCAGTCGGTTTCTCCCACCACTAGGAGCACGAGTGTGACAACCATGCT  289

seq1  GGACG--TTTTTTTTTTTTTTTTTAGTTAA-TTTTTTTGGTGTTGAGTGT  330
      |||||  ||||||||||||||||||||||| |||||||||||||||||||
seq2  GGACGTTTTTTTTTTTTTTTTTTTAGTTAATTTTTTTTGGTGTTGAGTGT  339

seq1  ATGTA-TTTATGGGAGGGGGTGGACAACATACATCAGTGCATGCAGAGAC  379
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTATGGGAGGGGGTGGACAACATACATCAGTGCATGCAGAGAC  389

seq1  CAGAGAGGACACTATGTGGCTATGTGTCTTGTTTTGTCGTTGACTACTTT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGACACTATGTGGCTATGTGTCTTGTTTTGTCGTTGACTACTTT  439

seq1  ACTCTCAGGAGTCAGGGTCTCCCTCTGAGCCTGGAGCAAGCCACAGGGAC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGGAGTCAGGGTCTCCCTCTGAGCCTGGAGCAAGCCACAGGGAC  489

seq1  TCCCCCATTCTGTCCGTGACGGGGCATGGGTATGCTCACGGCCACACCCG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATTCTGTCCGTGACGGGGCATGGGTATGCTCACGGCCACACCCG  539

seq1  GCTTTTTATGTGGGTGCTAGGGAACTGAGCTCGGGCTCTCAGGCCGGCAT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTATGTGGGTGCTAGGGAACTGAGCTCGGGCTCTCAGGCCGGCAT  589

seq1  AGCAAATGCTTTTACCTGCTGAGCCACCTCTGCAAGCTCCTGCCTGGCAT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGCTTTTACCTGCTGAGCCACCTCTGCAAGCTCCTGCCTGGCAT  639

seq1  TGATACATAGGGTCTAGGTATTAAACCCCCACACTTGCAAGGCAAGCCCT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATAGGGTCTAGGTATTAAACCCCCACACTTGCAAGGCAAGCCCT  689

seq1  TGACCAGATGGTGCTATTTAGCCTGACTCTGGACTCCTGTGCTGAAACAA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGATGGTGCTATTTAGCCTGACTCTGGACTCCTGTGCTGAAACAA  739

seq1  TCCTCCACCTCAGCCTCCCTGGTAGCTGGGACTGTAGAGACACCAGAGAG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACCTCAGCCTCCCTGGTAGCTGGGACTGTAGAGACACCAGAGAG  789

seq1  AGCTAATTTTGATTTGTAAGTAGTAGCAACAAGTGCTCATTTGATTATAA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTTTGATTTGTAAGTAGTAGCAACAAGTGCTCATTTGATTATAA  839

seq1  AGGCCTTGGGGCTGGAGAGGTGGCTCAGTGGTTACAAGTGCTTGTTGCTC  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGGGGCTGGAGAGGTGGCTCAGTGGTTACAAGTGCTTGTTGCTC  889

seq1  TTCAGAGGATGGTAGTTTCAAAGGCTCCCAGCACCCACATGGTGGCTCAC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGATGGTAGTTTCAAAGGCTCCCAGCACCCACATGGTGGCTCAC  939

seq1  ATCTATAACTCCAATTCCGGGGCATCTGAAGCCCTCTCCTGACCTCCAAG  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAACTCCAATTCCGGGGCATCTGAAGCCCTCTCCTGACCTCCAAG  989

seq1  GGCACCAGGCAAGCATCTATAATGCACATATTTAGGCAAAAATCTAAAAA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGGCAAGCATCTATAATGCACATATTTAGGCAAAAATCTAAAAA  1039

seq1  AAAATGTTTAAAAAAAGAACTAAAGGTCTTTACTGCTTTGTATTGAAGAA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTAAAAAAAGAACTAAAGGTCTTTACTGCTTTGTATTGAAGAA  1089

seq1  AGGCAAGTTAACAAAACACTTAATTTTTAAATAGAATTC  1118
      |||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTTAACAAAACACTTAATTTTTAAATAGAATTC  1128