BAC Information

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BAC

Clone NameB6Ng01-269L11
Chromosome14 (Build37)
Map Location 4,107,113 - 4,211,971
singlet/doubletdoublet
Overlap geneLOC100041019, ENSMUSG00000068790, LOC100041054
Upstream geneLOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755, LOC100040767, LOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012
Downstream geneLOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269L11.bB6Ng01-269L11.g
ACCGA072237GA072238
length1,1791,079
definitionB6Ng01-269L11.b B6Ng01-269L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,210,780 - 4,211,971)(4,107,113 - 4,108,202)
sequence
gaattctcatggaggccagaagcatccagtacccctagagctggagttag
gaggcacccagtgtgggtgccccaaagcaaactccctgccctcagagagg
acagtgtgtgctcttaatcactgagccatctctccagcccagaagcctgc
caacttcctaaccaggaatgtctgcctttatcccctggccttattttcag
cctgtgtaaaatgatgtgctttcctgacagctgacttttctctctagcct
tatgtaaatgtcacaattcacttagtcctgcaaaggaaaagaaaaaaaaa
aaagcctgggttacccccttctctccttgcttccccttcctgtcactttc
tctcccccacctctctggcctgcattatgttccttactaattttgaagtt
tttactctatttttacttatttgtgtgtgggccccatgtgcaagtgtgca
gaggtcagaagacagcttgcaggaattgtttcccaacttctgccatatga
gagctgggtattgaactcaggtggtcaggcttggcctcaggtgctggacc
aaccaaaccccaccccaccccctgctcccctcattggttgtgtcctctct
aagctgcttatatgtcatccctcttgccatgacccaagtcacaagttgaa
gtcctagtatcctcaataggagtcccttggacaaggagttccatgtaggt
ggttatcctaaggccacttgtctttatgctgcaccctgttctggaatggt
cttcctcttactcagccttgtacagcacctgttcatctttcacaattcac
cctaaggactacctttctcataaaagtattcccgactttgctgcatggta
aaaaaagaaagaaagaaaaagaagatagaaagaaagaaagtaagtaatga
ttgatagtatagtaatgaaagatacaaagagaaataagggaagggaaggg
agggaagggagaaggagggaaagaaagaaagaaggaagaaagaaagaaga
gaaagaaactaacctgttctgccctctctacactaatgctaacacaccat
ctgtcatgatgcctgagaagactttatttggagtcagcttcacattatcg
tctttcttggtagcaatattattaactgaacatctttcatcttcctggtc
tctggtacagttctagcacactcatgttt
gaattcccatagctgtggagcaaaccaggcctgttacaggagcccattga
gggtcttgataatctaaagtactcacaatatcttatctgtgtagcattta
gcatgactgttcttcaacatcattttctcagagttaaaatcagccttagt
gggggttgggagaaatgaggaccttcagacagttctggtagtataaaatt
gcttatgtctgttagaggccatgttcagaaagtggaaaagaagtccactt
tgacccagtgcttccagaacaaggaggagttatccacagagttgagagcg
ttcagggttgtagtggtcctcagagcagccctgaaggagaagctatcctg
atgtccatctgctgaaggatgaaaaggccctatgtggtgcagcccttcca
tgaactcagtgtgtgataatccatgcaagcttttgtccttcaaattgtca
gccttatcctactcaaaatagctctgacacagtcacattctagggagaaa
aatattcctttgcatcctggttatagacagttcctattactctgggctca
tacctttggacaccaagtcagtcaggtgatggaaaagggagatcctattg
gaagaaactgtttactttgggacaagtctgaaacaatgagcaacaacaag
agactggtccatcaccaacatgtgaccctaggctaggaaacaaacctatt
ctacacagccttgggaacttgctgagccagattggataataggacaagaa
ccctgaatcccagactggtatatgagtggaaagcatatcactgattgagc
tgcctatatgctatgcccacgaagtacctttcccattcaagatttgtttt
tatgcctccaaagtgtcctgggagatttttatattagtattaaccgggaa
actaaacaggtcactgcaatacatatgcttgtattgcataatacaaatat
tatgtgcgttgaggtgtaacctacaatagtcacaggggtgtttttctgtt
tctcatgaccatcactttttagttcagtgccaggctttgaatattttatt
aagcaagttttgcagatactgcgactatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4210780_4211971
seq2: B6Ng01-269L11.b_43_1221 (reverse)

seq1  AAACATGGAGTGTGCTGAGAACTGTACCAGAG-CCAGGAAGATGGAAGAT  49
      |||||| ||||||||| ||||||||||||||| ||||||||||| |||||
seq2  AAACAT-GAGTGTGCT-AGAACTGTACCAGAGACCAGGAAGATGAAAGAT  48

seq1  G-TCAGTT-ATAATATTTGCTACC-AGGAAGACGAT-ATGTGAAAGCTGA  95
      | |||||| |||||| |||||||| || |||||||| ||||| |||||||
seq2  GTTCAGTTAATAATA-TTGCTACCAAGAAAGACGATAATGTG-AAGCTGA  96

seq1  CTTCAAAT-AAGTCTTCTCAGGCATCATGACAGGATGGTGTGTAGCCATT  144
      || ||||| ||||||||||||||||||||||| ||||||||||   || |
seq2  CTCCAAATAAAGTCTTCTCAGGCATCATGACA-GATGGTGTGTTAGCA-T  144

seq1  TAGTGTAGAGAGGGCAG-ACAGGTTTTTGTTTTTCTTTTCTTTCTTTTCT  193
      ||||||||||||||||| |||||||  | | ||||| |||||||      
seq2  TAGTGTAGAGAGGGCAGAACAGGTTAGTTTCTTTCTCTTCTTTC------  188

seq1  TTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCCTTCCTTCTTCCTTCC  243
           ||||||     ||||||   |||||||||| ||||||| ||||||
seq2  -----TTTCTT---CCTTCTTT--CTTTCTTTCCC-TCCTTCTCCCTTCC  227

seq1  TTCC--TTCCTTCCTTTATTTCTTCTTTGTTTCTTTC-TTTCT-TTCTTT  289
       |||  | |||||| ||||||| ||||||| |||||| || || | || |
seq2  CTCCCTTCCCTTCCCTTATTTC-TCTTTGTATCTTTCATTACTATACTAT  276

seq1  CTTTC-TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTT  338
      |  || || ||| |||||||||||||| || |||||||||||||||||||
seq2  CAATCATTACTTACTTTCTTTCTTTCTATC-TTCTTTTTCTTTCTTTCTT  325

seq1  TTTTTACCATGCAGCAAAGTCGGGAATACTTTTATGAGAAAGGTAGTCCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCATGCAGCAAAGTCGGGAATACTTTTATGAGAAAGGTAGTCCT  375

seq1  TAGGGTGAATTGTGAAAGATGAACAGGTGCTGTACAAGGCTGAGTAAGAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGAATTGTGAAAGATGAACAGGTGCTGTACAAGGCTGAGTAAGAG  425

seq1  GAAGACCATTCCAGAACAGGGTGCAGCATAAAGACAAGTGGCCTTAGGAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCATTCCAGAACAGGGTGCAGCATAAAGACAAGTGGCCTTAGGAT  475

seq1  AACCACCTACATGGAACTCCTTGTCCAAGGGACTCCTATTGAGGATACTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTACATGGAACTCCTTGTCCAAGGGACTCCTATTGAGGATACTA  525

seq1  GGACTTCAACTTGTGACTTGGGTCATGGCAAGAGGGATGACATATAAGCA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCAACTTGTGACTTGGGTCATGGCAAGAGGGATGACATATAAGCA  575

seq1  GCTTAGAGAGGACACAACCAATGAGGGGAGCAGGGGGTGGGGTGGGGTTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAGAGGACACAACCAATGAGGGGAGCAGGGGGTGGGGTGGGGTTT  625

seq1  GGTTGGTCCAGCACCTGAGGCCAAGCCTGACCACCTGAGTTCAATACCCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTCCAGCACCTGAGGCCAAGCCTGACCACCTGAGTTCAATACCCA  675

seq1  GCTCTCATATGGCAGAAGTTGGGAAACAATTCCTGCAAGCTGTCTTCTGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATATGGCAGAAGTTGGGAAACAATTCCTGCAAGCTGTCTTCTGA  725

seq1  CCTCTGCACACTTGCACATGGGGCCCACACACAAATAAGTAAAAATAGAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCACACTTGCACATGGGGCCCACACACAAATAAGTAAAAATAGAG  775

seq1  TAAAAACTTCAAAATTAGTAAGGAACATAATGCAGGCCAGAGAGGTGGGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTTCAAAATTAGTAAGGAACATAATGCAGGCCAGAGAGGTGGGG  825

seq1  GAGAGAAAGTGACAGGAAGGGGAAGCAAGGAGAGAAGGGGGTAACCCAGG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGTGACAGGAAGGGGAAGCAAGGAGAGAAGGGGGTAACCCAGG  875

seq1  CTTTTTTTTTTTTCTTTTCCTTTGCAGGACTAAGTGAATTGTGACATTTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTCTTTTCCTTTGCAGGACTAAGTGAATTGTGACATTTA  925

seq1  CATAAGGCTAGAGAGAAAAGTCAGCTGTCAGGAAAGCACATCATTTTACA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCTAGAGAGAAAAGTCAGCTGTCAGGAAAGCACATCATTTTACA  975

seq1  CAGGCTGAAAATAAGGCCAGGGGATAAAGGCAGACATTCCTGGTTAGGAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAAAATAAGGCCAGGGGATAAAGGCAGACATTCCTGGTTAGGAA  1025

seq1  GTTGGCAGGCTTCTGGGCTGGAGAGATGGCTCAGTGATTAAGAGCACACA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGGCTTCTGGGCTGGAGAGATGGCTCAGTGATTAAGAGCACACA  1075

seq1  CTGTCCTCTCTGAGGGCAGGGAGTTTGCTTTGGGGCACCCACACTGGGTG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTCTGAGGGCAGGGAGTTTGCTTTGGGGCACCCACACTGGGTG  1125

seq1  CCTCCTAACTCCAGCTCTAGGGGTACTGGATGCTTCTGGCCTCCATGAGA  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAACTCCAGCTCTAGGGGTACTGGATGCTTCTGGCCTCCATGAGA  1175

seq1  ATTC  1192
      ||||
seq2  ATTC  1179

seq1: chr14_4107113_4108202
seq2: B6Ng01-269L11.g_65_1143

seq1  GAATTCCCATAGCTGTGGAGCAAACCAGGCCTGTTACAGGAGCCCATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATAGCTGTGGAGCAAACCAGGCCTGTTACAGGAGCCCATTGA  50

seq1  GGGTCTTGATAATCTAAAGTACTCACAATATCTTATCTGTGTAGCATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGATAATCTAAAGTACTCACAATATCTTATCTGTGTAGCATTTA  100

seq1  GCATGACTGTTCTTCAACATCATTTTCTCAGAGTTAAAATCAGCCTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACTGTTCTTCAACATCATTTTCTCAGAGTTAAAATCAGCCTTAGT  150

seq1  GGGGGTTGGGAGAAATGAGGACCTTCAGACAGTTCTGGTAGTATAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTGGGAGAAATGAGGACCTTCAGACAGTTCTGGTAGTATAAAATT  200

seq1  GCTTATGTCTGTTAGAGGCCATGTTCAGAAAGTGGAAAAGAAGTCCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGTCTGTTAGAGGCCATGTTCAGAAAGTGGAAAAGAAGTCCACTT  250

seq1  TGACCCAGTGCTTCCAGAACAAGGAGGAGTTATCCACAGAGTTGAGAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAGTGCTTCCAGAACAAGGAGGAGTTATCCACAGAGTTGAGAGCG  300

seq1  TTCAGGGTTGTAGTGGTCCTCAGAGCAGCCCTGAAGGAGAAGCTATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTTGTAGTGGTCCTCAGAGCAGCCCTGAAGGAGAAGCTATCCTG  350

seq1  ATGTCCATCTGCTGAAGGATGAAAAGGCCCTATGTGGTGCAGCCCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATCTGCTGAAGGATGAAAAGGCCCTATGTGGTGCAGCCCTTCCA  400

seq1  TGAACTCAGTGTGTGATAATCCATGCAAGCTTTTGTCCTTCAAATTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGTGTGTGATAATCCATGCAAGCTTTTGTCCTTCAAATTGTCA  450

seq1  GCCTTATCCTACTCAAAATAGCTCTGACACAGTCACATTCTAGGGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATCCTACTCAAAATAGCTCTGACACAGTCACATTCTAGGGAGAAA  500

seq1  AATATTCCTTTGCATCCTGGTTATAGACAGTTCCTATTACTCTGGGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCTTTGCATCCTGGTTATAGACAGTTCCTATTACTCTGGGCTCA  550

seq1  TACCTTTGGACACCAAGTCAGTCAGGTGATGGAAAAGGGAGATCCTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGGACACCAAGTCAGTCAGGTGATGGAAAAGGGAGATCCTATTG  600

seq1  GAAGAAACTGTTTACTTTGGGACAAGTCTGAAACAATGAGCAACAACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACTGTTTACTTTGGGACAAGTCTGAAACAATGAGCAACAACAAG  650

seq1  AGACTGGTCCATCACCAACATGTGACCCTAGGCTAGGAAACAAACCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTCCATCACCAACATGTGACCCTAGGCTAGGAAACAAACCTATT  700

seq1  CTACACAGCCTTGGGAACTTGCTGAGCCAGATTGGATAATAGGACAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGCCTTGGGAACTTGCTGAGCCAGATTGGATAATAGGACAAGAA  750

seq1  CCCTGAATCCCAGACTGGTATATGAGTGGAAAGCATATCACTGATTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATCCCAGACTGGTATATGAGTGGAAAGCATATCACTGATTGAGC  800

seq1  TGCCTATATGCTATGCCCACGAAGTACCTTTCCCATTCAAGATTTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATATGCTATGCCCACGAAGTACCTTTCCCATTCAAGATTTGTTTT  850

seq1  TATGCCTCCAAAGTGTCCTGGGAGATTTTTATATTAGTATTAACCGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTCCAAAGTGTCCTGGGAGATTTTTATATTAGTATTAACCGGGAA  900

seq1  ACTAAACAGGTCACTGCAATACAATATGCTTGTATTGCATAAATACAAAT  950
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  ACTAAACAGGTCACTGCAATAC-ATATGCTTGTATTGCAT-AATACAAAT  948

seq1  ATTATGTGCGTTTGAGGGTGTAACCTACAATAGTCACAGGGGTGTTTTTC  1000
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  ATTATGTGCG-TTGA-GGTGTAACCTACAATAGTCACAGGGGTGTTTTTC  996

seq1  TGTTTCTTCATGACCATCACTTTTAAGGTTCAGTGCCAGGCCTTTTGAAT  1050
      |||||| ||||||||||||||||| | ||||||||||||||  |||||||
seq2  TGTTTC-TCATGACCATCACTTTTTA-GTTCAGTGCCAGGC--TTTGAAT  1042

seq1  ATTTTTATTTAGCAAAGTTTTGCAGATACTGCGACCTATG  1090
      | ||||||| ||| |||||||||||||||||||| |||||
seq2  A-TTTTATTAAGC-AAGTTTTGCAGATACTGCGA-CTATG  1079