BAC Information

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BAC

Clone NameB6Ng01-270C16
Chromosome14 (Build37)
Map Location 33,371,418 - 33,441,006
singlet/doubletdoublet
Overlap geneErcc6, 9430077A04Rik, Prrxl1
Upstream geneColq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618
Downstream gene3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270C16.bB6Ng01-270C16.g
ACCGA072578GA072579
length1,170255
definitionB6Ng01-270C16.b B6Ng01-270C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,371,418 - 33,372,601)(33,440,752 - 33,441,006)
sequence
gaattcttctcagtgttttcttccatatgcagttagaaagttggtcaaaa
tactcagtttggagaggaccaaaataatggacaaacaaaaatcattatta
aacacattaagtaacaattacatgtgttttagggttgatggcattcatat
gttacaaaggaaatttcatagaacagtgtctcatttcctcatctagttcc
ggacacctcatcggattatcttgtctggctcaccgatgcagaataacctc
cgagagctgtggtcactcttcgacttcatcttcccaggaaagctgggcac
attgcctgtgtttatggagcagttctctgtccccatcaccatgggaggct
attccaatgcttccccagtacaggtaatacagtgggaggaacaccatttc
cctaaacgtatactttgtagccaagtcattgacggtgtaaaggaagatgg
ccaggcttataaattagtgtctgataaaaatcaggtttacagataaagtt
tttaaaaattcatgtacaccatttacttaaggaaagcacaagaataaaac
ttcccttttcacaagggaaacgaaatgatttcagtgctgatttcgctggg
aaatgtcgttcagatacgaagtttaaaaataattttggaagtaaacacag
gagcagtgagcagtcatggagaagattgagcagttctggacagggtacac
tttggtgtcagccagggcagggttccttttacagtgagaagaggtggact
gaaggtagaaaagacacaaggaaccactccttcctttaacctggctctgg
gaaaacaggccacagagtgtgtgtggagaagctggaactaggggccttaa
gaggaagtcagtggttgccgagggacagcagaaaggcatttgatccagca
ggtagaggtagtagttcttggggtatttgggctgtaaatagtcatgagaa
ggctggcattagagagtttggcttctgagggggaagtgaggagctggacc
aagacttattagtagtggtgtcttggaatacccagtgacattttagcagg
atgataataagcagatctagacactgatagataagagcaacttgtcttac
tgtaccctgaactgagcttaagctggacccacagaatagttgatttgtat
aggaattagagggtggggct
ctgaaggggcccaagccagagctgagaaccacagaaagaatagagtctcc
tgtgtccctgattcacctgccatcttggacatgcccacaagtgcttataa
gatgatttttctcctgtcagagcatgacttggaagtcccccacttcagac
cacctcagagcactaatccaggtgcaatgccagtgtccactttgccttca
aagccctgcagacccatgtctcacagacacaagctgggggggggggggcg
ggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_33371418_33372601
seq2: B6Ng01-270C16.b_46_1215

seq1  GAATTCTTCTCAGTGTTTTCTTCCATATGCAGTTAGAAAGTTGGTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCAGTGTTTTCTTCCATATGCAGTTAGAAAGTTGGTCAAAA  50

seq1  TACTCAGTTTGGAGAGGACCAAAATAATGGACAAACAAAAATCATTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGTTTGGAGAGGACCAAAATAATGGACAAACAAAAATCATTATTA  100

seq1  AACACATTAAGTAACAATTACATGTGTTTTAGGGTTGATGGCATTCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTAAGTAACAATTACATGTGTTTTAGGGTTGATGGCATTCATAT  150

seq1  GTTACAAAGGAAATTTCATAGAACAGTGTCTCATTTCCTCATCTAGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAAGGAAATTTCATAGAACAGTGTCTCATTTCCTCATCTAGTTCC  200

seq1  GGACACCTCATCGGATTATCTTGTCTGGCTCACCGATGCAGAATAACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCTCATCGGATTATCTTGTCTGGCTCACCGATGCAGAATAACCTC  250

seq1  CGAGAGCTGTGGTCACTCTTCGACTTCATCTTCCCAGGAAAGCTGGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGCTGTGGTCACTCTTCGACTTCATCTTCCCAGGAAAGCTGGGCAC  300

seq1  ATTGCCTGTGTTTATGGAGCAGTTCTCTGTCCCCATCACCATGGGAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGTGTTTATGGAGCAGTTCTCTGTCCCCATCACCATGGGAGGCT  350

seq1  ATTCCAATGCTTCCCCAGTACAGGTAATACAGTGGGAGGAACACCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATGCTTCCCCAGTACAGGTAATACAGTGGGAGGAACACCATTTC  400

seq1  CCTAAACGTATACTTTGTAGCCAAGTCATTGACGGTGTAAAGGAAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACGTATACTTTGTAGCCAAGTCATTGACGGTGTAAAGGAAGATGG  450

seq1  CCAGGCTTATAAATTAGTGTCTGATAAAAATCAGGTTTACAGATAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTATAAATTAGTGTCTGATAAAAATCAGGTTTACAGATAAAGTT  500

seq1  TTTAAAAATTCATGTACACCATTTACTTAAGGAAAGCACAAGAATAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTCATGTACACCATTTACTTAAGGAAAGCACAAGAATAAAAC  550

seq1  TTCCCTTTTCACAAGGGAAACGAAATGATTTCAGTGCTGATTTCGCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTTCACAAGGGAAACGAAATGATTTCAGTGCTGATTTCGCTGGG  600

seq1  AAATGTCGTTCAGATACGAAGTTTAAAAATAATTTTGGAAGTAAACACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCGTTCAGATACGAAGTTTAAAAATAATTTTGGAAGTAAACACAG  650

seq1  GAGCAGTGAGCAGTCATGGAGAAGATTGAGCAGTTCTGGACAGGGTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGAGCAGTCATGGAGAAGATTGAGCAGTTCTGGACAGGGTACAC  700

seq1  TTTGGTGTCAGCCAGGGCAGGGTTCCTTTTACAGTGAGAAGAGGTGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTCAGCCAGGGCAGGGTTCCTTTTACAGTGAGAAGAGGTGGACT  750

seq1  GAAGGTAGAAAAGACACAAGGAACCACTCCTTCCTTTAACCTGGCTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAGAAAAGACACAAGGAACCACTCCTTCCTTTAACCTGGCTCTGG  800

seq1  GAAAACAGGCCACAGAGTGTGTGTGGAGAAGCTGGAACTAGGGGCCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGGCCACAGAGTGTGTGTGGAGAAGCTGGAACTAGGGGCCTTAA  850

seq1  GAGGAAGTCAGTGGTTGCCGAGGGACAGCAGGAAGGCATTTGATCCAGCA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGGAAGTCAGTGGTTGCCGAGGGACAGCAGAAAGGCATTTGATCCAGCA  900

seq1  GGTAGAGGTAGTAGTTCTTGGGGTATTTGGGCTGTAAATAGTCATGAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGGTAGTAGTTCTTGGGGTATTTGGGCTGTAAATAGTCATGAGAA  950

seq1  GGCTGGCATTAGAGAG-TTGGCTTCTGAGGGGGAAGTGAGGAGCTGGACC  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCTGGCATTAGAGAGTTTGGCTTCTGAGGGGGAAGTGAGGAGCTGGACC  1000

seq1  AAGACTTATTAGGTAGTGGTGTCTTGGAATAACCCAGGTGACATTTTAGG  1049
      ||||||||||| |||||||||||||||||| ||||| ||||||||||| |
seq2  AAGACTTATTA-GTAGTGGTGTCTTGGAAT-ACCCA-GTGACATTTTA-G  1046

seq1  CAGGATGAATAAATAAGCAAGATCTAGACACTGATAGAATAAAGGAAGCA  1099
      ||||||||   ||||||| |||||||||||||||||||  | || ||   
seq2  CAGGATGA--TAATAAGC-AGATCTAGACACTGATAGATAAGAGCAA---  1090

seq1  GGGTTGGTCTTACTGTA-CCTG-ACTGAGGCTTTAGGCCTGG-GCCACAG  1146
          | ||||||||||| |||| ||||| |||| ||  ||||  ||||||
seq2  ---CTTGTCTTACTGTACCCTGAACTGA-GCTTAAG--CTGGACCCACAG  1134

seq1  -ATAGTTTTGGGTTTGTATAGAATTTAGAGGGTGGGGCT  1184
       ||||||   | ||||||||| | |||||||||||||||
seq2  AATAGTT---GATTTGTATAGGAATTAGAGGGTGGGGCT  1170

seq1: chr14_33440752_33441006
seq2: B6Ng01-270C16.g_71_325 (reverse)

seq1  CCCCCCGCCCCCCCCCCCCCAGCTTGTGTCTGTGAGACATGGGTCTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGCCCCCCCCCCCCCAGCTTGTGTCTGTGAGACATGGGTCTGCAG  50

seq1  GGCTTTGAAGGCAAAGTGGACACTGGCATTGCACCTGGATTAGTGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGAAGGCAAAGTGGACACTGGCATTGCACCTGGATTAGTGCTCTG  100

seq1  AGGTGGTCTGAAGTGGGGGACTTCCAAGTCATGCTCTGACAGGAGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTCTGAAGTGGGGGACTTCCAAGTCATGCTCTGACAGGAGAAAAA  150

seq1  TCATCTTATAAGCACTTGTGGGCATGTCCAAGATGGCAGGTGAATCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTATAAGCACTTGTGGGCATGTCCAAGATGGCAGGTGAATCAGGG  200

seq1  ACACAGGAGACTCTATTCTTTCTGTGGTTCTCAGCTCTGGCTTGGGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAGACTCTATTCTTTCTGTGGTTCTCAGCTCTGGCTTGGGCCCC  250

seq1  TTCAG  255
      |||||
seq2  TTCAG  255