BAC Information

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BAC

Clone NameB6Ng01-273F04
Chromosome14 (Build37)
Map Location 94,681,685 - 94,818,096
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273F04.bB6Ng01-273F04.g
ACCGA074927GA074928
length1,031524
definitionB6Ng01-273F04.b B6Ng01-273F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,681,685 - 94,682,712)(94,817,567 - 94,818,096)
sequence
gaattcttttacctatgtttttggggacgttctagggattcatagagttg
gatcctaaggtaggctaaattttaacttttggagaattctccaaactgat
ttccactatggctttagtagttcataatctgtgcactagggaacgagtgg
tccctttcttgcatcccccgaccgatatttgttgtaggttgttctgttga
tcttgatcattctgactggggcaagatgaaatctcaaatttgtttttatt
tgcatttctgtaattgccaaggaaaagtgaacattaaaaaaaaatacttc
gtggccttttttttttttttaaacttcctttaatacctggatatttagat
cctaagcccactttaggaataaaatgttatcttaatttctaaatacaaaa
attttatacgaagaaaatgtaaagtattatcagcttagtctccatttcct
cttagttgatttggttggcatggttacaatctccctttgaatagtttttt
ttttattattattatttaattttttttttttggccaattctgtggatgat
gaggccaatggttaaacaaagcaagtcagtatattcttcctgttgatcaa
gatttatctgtgagaactttacattctgctagagttttctaacatgagtc
tccaatttcccaattaaagcttcatcagttttgttttgtgtaccaatctt
tccatgtgccggccttttgtcaccgagatctacaggtactgcagaggagc
ttcacaactgtacttagttttgtaattggggtgggctctggctatccatg
ttaaactctccttggcctagctgtcttcgtagctgtacacttcagagtac
ccacggagaatttcagctttagacttcctaccacatattttcttactatt
catagccagcttctgctccaacttctatggagaatcctttctatgttttt
agatctcacaatcgaaggacatgtttcttctatatttcaaagcatgtcta
cttctcatgttttgtttattgtacatgtttc
caagtacagaacccataacagaaggataaatttaccctagaaaattgtcc
tctgagacttctacataaaatttgtccatctctgttaaaataagcaccac
tcagattttttttctctctgtctctctcttccctctccctccatatatat
atatatatatatatatatatatatatatggatagatagatagatagatag
ataggagagaaaaagagtggggggggggctgtgtgtgagagggagggaga
gagagagagagggtgagggtgcgggggagagtgtgggggatatttaaaga
tcaatagagagaccaattaagagagaggatctgaataatggggctatatt
cattattgaatatgaaatgaagaatttactgttacaaaagtaaaaaataa
ttttttaaacaagcagatactggcaatgtgtagagtatattaattgttaa
acacaacacaggacagaaacttgagtaacacattatttggaaacacgagg
cgaggagaggtatctgagcagtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94681685_94682712
seq2: B6Ng01-273F04.b_47_1077

seq1  GAATTCTTTTACCTATGTTTTTGGGGACGTTCTAGGGATTCATAGAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACCTATGTTTTTGGGGACGTTCTAGGGATTCATAGAGTTG  50

seq1  GATCCTAAGGTAGGCTAAATTTTAACTTTTGGAGAATTCTCCAAACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAAGGTAGGCTAAATTTTAACTTTTGGAGAATTCTCCAAACTGAT  100

seq1  TTCCACTATGGCTTTAGTAGTTCATAATCTGTGCACTAGGGAACGAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTATGGCTTTAGTAGTTCATAATCTGTGCACTAGGGAACGAGTGG  150

seq1  TCCCTTTCTTGCATCCCCCGACCGATATTTGTTGTAGGTTGTTCTGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTTGCATCCCCCGACCGATATTTGTTGTAGGTTGTTCTGTTGA  200

seq1  TCTTGATCATTCTGACTGGGGCAAGATGAAATCTCAAATTTGTTTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCATTCTGACTGGGGCAAGATGAAATCTCAAATTTGTTTTTATT  250

seq1  TGCATTTCTGTAATTGCCAAGGAAAAGTGAACATTAAAAAAAAATACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCTGTAATTGCCAAGGAAAAGTGAACATTAAAAAAAAATACTTC  300

seq1  GTGGCCTTTTTTTTTTTTTTAAACTTCCTTTAATACCTGGATATTTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTTTTTTTTTTTTAAACTTCCTTTAATACCTGGATATTTAGAT  350

seq1  CCTAAGCCCACTTTAGGAATAAAATGTTATCTTAATTTCTAAATACAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCCCACTTTAGGAATAAAATGTTATCTTAATTTCTAAATACAAAA  400

seq1  ATTTTATACGAAGAAAATGTAAAGTATTATCAGCTTAGTCTCCATTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATACGAAGAAAATGTAAAGTATTATCAGCTTAGTCTCCATTTCCT  450

seq1  CTTAGTTGATTTGGTTGGCATGGTTACAATCTCCCTTTGAATAGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTGATTTGGTTGGCATGGTTACAATCTCCCTTTGAATAGTTTTTT  500

seq1  TTTTATTATTATTATTTAATTTTTTTTTTTTGGCCAATTCTGTGGATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATTATTATTTAATTTTTTTTTTTTGGCCAATTCTGTGGATGAT  550

seq1  GAGGCCAATGGTTAAACAAAGCAAGTCAGTATATTCTTCCTGTTGATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAATGGTTAAACAAAGCAAGTCAGTATATTCTTCCTGTTGATCAA  600

seq1  GATTTATCTGTGAGAACTTTACATTCTGCTAGAGTTTTCTAACATGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCTGTGAGAACTTTACATTCTGCTAGAGTTTTCTAACATGAGTC  650

seq1  TCCAATTTCCCAATTAAAGCTTCATCAGTTTTGTTTTGTGTACCAATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTCCCAATTAAAGCTTCATCAGTTTTGTTTTGTGTACCAATCTT  700

seq1  TCCATGTGCCGGCCTTTTGTCACCGAGATCTACAGGTACTGCAGAGGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGCCGGCCTTTTGTCACCGAGATCTACAGGTACTGCAGAGGAGC  750

seq1  TTCACAACTGTACTTAGTTTTGTAATT-GGGTGGGCTCTGGCTATCCATG  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCACAACTGTACTTAGTTTTGTAATTGGGGTGGGCTCTGGCTATCCATG  800

seq1  TTAAACTCTCCTTGGCCTAGCTGTCTTCGTAGGCTGTACACTTCAGAGTA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTAAACTCTCCTTGGCCTAGCTGTCTTCGTA-GCTGTACACTTCAGAGTA  849

seq1  CCCACGGAGAATTTCAGCTTTAGACTTCCCTACCACATA-TTTCTTACTA  898
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  CCCACGGAGAATTTCAGCTTTAGACTT-CCTACCACATATTTTCTTACTA  898

seq1  TTCATAGCCAGC-TCTGCTCCAACTTCTATGGAGAATCCTTTCTAATGTT  947
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  TTCATAGCCAGCTTCTGCTCCAACTTCTATGGAGAATCCTTTCT-ATGTT  947

seq1  TTTAGATCTCCACATCGAA-GACATGTT--CTCTATATTTCAAAGCATGT  994
      ||||||||||   |||||| ||||||||   |||||||||||||||||| 
seq2  TTTAGATCTCACAATCGAAGGACATGTTTCTTCTATATTTCAAAGCATG-  996

seq1  TCTAC-TCTCATGTTTTGTTTA-TGTACAATGTTTC  1028
      ||||| |||||||||||||||| ||||| |||||||
seq2  TCTACTTCTCATGTTTTGTTTATTGTAC-ATGTTTC  1031

seq1: chr14_94817567_94818096
seq2: B6Ng01-273F04.g_68_596 (reverse)

seq1  TACTGCTCAGATACCTCTCCACGCCTCGTGTTTCCAAATAAATGTGTTAC  50
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  TACTGCTCAGATACCTCTCCTCGCCTCGTGTTTCCAAAT-AATGTGTTAC  49

seq1  TCAAGTTTCTGTCCTGTTTTGTCTTTAACAATTAATCTACTCTAAACATT  100
      ||||||||||||||||| |||| ||||||||||||| ||||||| |||||
seq2  TCAAGTTTCTGTCCTGTGTTGTGTTTAACAATTAATATACTCTACACATT  99

seq1  GGAAGTATCTGCTTGTTTAAAAAATTATTTTCTACTATTGTAACAGTAAA  150
      |  |||||||||||||||||||||||||||| |||| |||||||||||||
seq2  GCCAGTATCTGCTTGTTTAAAAAATTATTTTTTACTTTTGTAACAGTAAA  149

seq1  TTCTTCATTTCATATTCAATAATGAATATAGCCCCATTATTCAGATCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTTCATATTCAATAATGAATATAGCCCCATTATTCAGATCCTC  199

seq1  TCTCTTAATTGGTCTCTCTATTGATCTTTAAATATTATGTATATTCTTCT  250
      |||||||||||||||||||||||||||||||||||     | | ||| | 
seq2  TCTCTTAATTGGTCTCTCTATTGATCTTTAAATATCCCCCACACTCTCCC  249

seq1  GGGCATCTTGGCATTTTCTTTTGAAATATGTAAAAACTGTATATTTTTCT  300
        ||| | |  |  | ||| |               || | |   |  ||
seq2  CCGCACCCTCACCCTCTCTCT---------------CTCTCTCCCTCCCT  284

seq1  CT-------ATCTAC-------CTATTTATCTAT-CTATCTATCTATCTA  335
      ||       | |  |       || ||| ||| | |||||||||||||||
seq2  CTCACACACAGCCCCCCCCCCACTCTTTTTCTCTCCTATCTATCTATCTA  334

seq1  TCTATCTATCCATATATATATATATATATATATATATATATATATATGGA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCCATATATATATATATATATATATATATATATATATATGGA  384

seq1  GGGAGAGGGAAGAGAGAGACAGAGAGAAAAAAAATCTGAGTGGTGCTTAT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGAAGAGAGAGACAGAGAGAAAAAAAATCTGAGTGGTGCTTAT  434

seq1  TTTAACAGAGATGGACAAATTTTATGTAGAAGTCTCAGAGGACAATTTTC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGAGATGGACAAATTTTATGTAGAAGTCTCAGAGGACAATTTTC  484

seq1  TAGGGTAAATTTATCCTTCTGTTATGGGTTCTGTACTTGGAATTC  530
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAAATTTATCCTTCTGTTATGGGTTCTGTACTTGGAATTC  529