BAC Information

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BAC

Clone NameB6Ng01-273G12
Chromosome14 (Build37)
Map Location 84,849,430 - 84,850,600
singlet/doubletsinglet
Overlap genePcdh17
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream gene9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273G12.bB6Ng01-273G12.g
ACCGA074987GA074988
length9931,153
definitionB6Ng01-273G12.b B6Ng01-273G12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagtctgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctg

gaattctataacccatcttttaaaggactgaaggaagacagaggaaactg
ttagctgtttcagtggagaatttttaagacagcagtagcatagggaattg
agacactttggtcaaattacaaacttaatccaaagtccattttgtacttt
ggtggaatgggttacagtttttttttttttgacataaaagaatacaaaga
cagtcttttacatactacttaaactgttgaaatttgtggtagtatgtgat
ttttcttggtttgggtttcactctttgtgaggacccaccactatgattta
cagccaataaccagcttcaatggcaatataattaacatagtacaagcact
acatccttccaattttttggatattttattcaagagtgctcttcacttgt
ctaagaagacacacttgctgacaattttactgcaccaatttgattttata
gatttatttttctgctggaaactagataaaaattcaactcacagccctta
aagtagatgattaagtattagccttttgtgacaactttgtcagtggcata
aatatagaacaggtgtacaaaatatttgcaattccaaaatgactacatca
catctataaacaaacatttaatcattattccctctatagagatattagtg
tttataaataccagtttcacgcagttacaggaagacatttttagaagcca
agtttttatagttgagaatttcttttatgtttcatataaactttaagtcc
atgattacatgattactcatatacagtgaatattataaaaatggcatttt
atacttgaatagtaaattacattgtacttggcaagccttgctcacatgga
cactatgctgtcagagaaaatgttttctgcttagtgttagggcatgggag
gggattatattagcaggtctatgggtcttcacactccatctgagcatagt
aactttgctggagacagctttgcaaagcataatagtaaggccaatgactt
tcattacctcaaactaaactgcgcctcgacaacaccacacacgtgtccat
tttttatactcaggtgcaacgtccatggcttgccattcgaagagattgta
cacatgtgttctaaggtatatggatcagatatttccgtgcacaacagtag
tga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84849430_84850600
seq2: B6Ng01-273G12.g_64_1216 (reverse)

seq1  TCACTACTGTTGTGTCACAGAAAAATATAATTCTTGGGTATCATAATACT  50
      |||||||||||||| ||| |||| || | ||          ||||   ||
seq2  TCACTACTGTTGTG-CACGGAAATATCTGAT---------CCATATACCT  40

seq1  TAGAACACATGTTGTTACAAACTCCTCTGAATGAGCAGGCATTGACGTTT  100
      ||||||||||||   ||||| ||| || |||||   || ||| |||| ||
seq2  TAGAACACATGT--GTACAATCTCTTC-GAATGGCAAGCCATGGACG-TT  86

seq1  GCACCTGAGTATAAAAAATTGACACGTGTGTGTGTG-TGGGGGGGCGCAG  149
      ||||||||||||||||||| |||||||||||| ||| ||  | |||||||
seq2  GCACCTGAGTATAAAAAATGGACACGTGTGTG-GTGTTGTCGAGGCGCAG  135

seq1  TTTAGTTTGAGGTAAATGGAAAGTCATTGGCCTTACTATTATGCTTTGCA  199
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  TTTAGTTTGAGGTAA--TGAAAGTCATTGGCCTTACTATTATGCTTTGCA  183

seq1  AAGCTTGTCT-CAGCAAAGTTACTATTGCTCAGATGGAGTGTTGAAGACC  248
      |||| ||||| |||||||||||||| ||||||||||||||| ||||||||
seq2  AAGC-TGTCTCCAGCAAAGTTACTA-TGCTCAGATGGAGTG-TGAAGACC  230

seq1  CATAGACCTGCTAATATAATCCCCTCCCATGCCCTAACACTAAGCAGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACCTGCTAATATAATCCCCTCCCATGCCCTAACACTAAGCAGAAA  280

seq1  ACATTTTCTCTGACAGCATAGTGTCCATGTGAGCAAGGCTTGCCAAGTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTCTGACAGCATAGTGTCCATGTGAGCAAGGCTTGCCAAGTAC  330

seq1  AATGTAATTTACTATTCAAGTATAAAATGCCATTTTTATAATATTCACTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATTTACTATTCAAGTATAAAATGCCATTTTTATAATATTCACTG  380

seq1  TATATGAGTAATCATGTAATCATGGACTTAAAGTTTATATGAAACATAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGTAATCATGTAATCATGGACTTAAAGTTTATATGAAACATAAA  430

seq1  AGAAATTCTCAACTATAAAAACTTGGCTTCTAAAAATGTCTTCCTGTAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTCAACTATAAAAACTTGGCTTCTAAAAATGTCTTCCTGTAAC  480

seq1  TGCGTGAAACTGGTATTTATAAACACTAATATCTCTATAGAGGGAATAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGAAACTGGTATTTATAAACACTAATATCTCTATAGAGGGAATAAT  530

seq1  GATTAAATGTTTGTTTATAGATGTGATGTAGTCATTTTGGAATTGCAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATGTTTGTTTATAGATGTGATGTAGTCATTTTGGAATTGCAAAT  580

seq1  ATTTTGTACACCTGTTCTATATTTATGCCACTGACAAAGTTGTCACAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTACACCTGTTCTATATTTATGCCACTGACAAAGTTGTCACAAAA  630

seq1  GGCTAATACTTAATCATCTACTTTAAGGGCTGTGAGTTGAATTTTTATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATACTTAATCATCTACTTTAAGGGCTGTGAGTTGAATTTTTATCT  680

seq1  AGTTTCCAGCAGAAAAATAAATCTATAAAATCAAATTGGTGCAGTAAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCAGCAGAAAAATAAATCTATAAAATCAAATTGGTGCAGTAAAAT  730

seq1  TGTCAGCAAGTGTGTCTTCTTAGACAAGTGAAGAGCACTCTTGAATAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAAGTGTGTCTTCTTAGACAAGTGAAGAGCACTCTTGAATAAAA  780

seq1  TATCCAAAAAATTGGAAGGATGTAGTGCTTGTACTATGTTAATTATATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAAAAATTGGAAGGATGTAGTGCTTGTACTATGTTAATTATATTG  830

seq1  CCATTGAAGCTGGTTATTGGCTGTAAATCATAGTGGTGGGTCCTCACAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGAAGCTGGTTATTGGCTGTAAATCATAGTGGTGGGTCCTCACAAA  880

seq1  GAGTGAAACCCAAACCAAGAAAAATCACATACTACCACAAATTTCAACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAACCCAAACCAAGAAAAATCACATACTACCACAAATTTCAACAG  930

seq1  TTTAAGTAGTATGTAAAAGACTGTCTTTGTATTCTTTTATGTCAAAAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAGTATGTAAAAGACTGTCTTTGTATTCTTTTATGTCAAAAAAA  980

seq1  AAAAAACTGTAACCCATTCCACCAAAGTACAAAATGGACTTTGGATTAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTGTAACCCATTCCACCAAAGTACAAAATGGACTTTGGATTAAG  1030

seq1  TTTGTAATTTGACCAAAGTGTCTCAATTCCCTATGCTACTGCTGTCTTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATTTGACCAAAGTGTCTCAATTCCCTATGCTACTGCTGTCTTAA  1080

seq1  AAATTCTCCACTGAAACAGCTAACAGTTTCCTCTGTCTTCCTTCAGTCCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCCACTGAAACAGCTAACAGTTTCCTCTGTCTTCCTTCAGTCCT  1130

seq1  TTAAAAGATGGGTTATAGAATTC  1171
      |||||||||||||||||||||||
seq2  TTAAAAGATGGGTTATAGAATTC  1153


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