BAC Information

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BAC

Clone NameB6Ng01-273P21
Chromosome14 (Build37)
Map Location 115,705,080 - 115,788,259
singlet/doubletdoublet
Overlap geneGpc5
Upstream geneLOC668791, LOC100043821, LOC100043521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273P21.bB6Ng01-273P21.g
ACCGA075414GA075415
length1,1201,101
definitionB6Ng01-273P21.b B6Ng01-273P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,705,080 - 115,706,201)(115,787,155 - 115,788,259)
sequence
gaattcactccgtagaatctgttctcttttcctgtctcaaagccatggct
tctacatcttaattctgttcgaggttcacatgaggtcaactttgactgtg
gatagtgtgtccatagatgaagcctgggcaagttcatgtttctttcactc
aggaagaagaagatatatcacagctcatgagagaagttccagggactctt
caagaagcatgggaatagaatatctctttgtattgttggttgtatccaat
aaaagagagtgtgttcttggagctattgacagacatcatccctgtcagaa
tgtcttgtggtgccaaacctgtgatctttatatatttggtagtttaccaa
ctaactaaatatctgtgtgacatacatttttcttacagagtagtgtctta
ctatagtggtgatatttggtttattaaactcctatcatttattattttgt
gcatcattattaggcttatttagtgtattagaaggtgaggtttgaggaaa
acaatcaaacatgtaattggtataaagcagtcttttgttaagatgaatat
attttccctactttcttcacaaaactagtagtcaccaaaaagaaaccaaa
ttgcatcactaaaaatgacattactacatcaaaatatatagcaacctttt
atgtattttatatattaatttaggatctatagctatagctatcttcctat
ctatcatatacatatatatttagacaactctgtagatgttttgatttagg
atgttgatcactttctgatttatactttttagaaagttcataagagtatt
taaatgtgaattgatatactgaacatagaaatatgagaaaaatatttaac
ttaagactaaagcaagatactagtcccctatctgatttaggattggtaaa
gatccattcccaatcagttggtggcctttttgtcttattgacagtatctt
tgccttacagaagctttgccattttatgaggtccattgtcaattctcgat
cttacagcacaaggccattgctgttctgttcaggatgttttccccttggt
gcccatatcctcgaggcttttctccactttctcttctatagtttcactat
ctcaggtttatgtggagttc

gaattcttaagatgaacagaaagaattatttaaatgaggcataatctcac
agcatctaacaaacacttatactgacagtggaggcttcctctagccccta
gaaatagcttcagccctggaaactgcctttaccatagaatggagatgcta
aatgtctattagttcagttctgataaggaaaggatggaaaactgacacgg
aatgcacctagagctatttaccgaaaaatcaaatggaccattataatgtg
tttttcgtgcttgttatttttaatctttgccttgtttctaataacccaat
ctgataaatagtatgacagggcttaagataaatacatatataatatcaat
agcaccaagttttctgtgtaagagctttgacgttatacattgtttactca
ttgagagaaacagaaattaaaacagttctgtggaggtgctctcacgagga
caggaaatgttaataatttaagtttcagtgaaaaactgtaaatgaatgta
attaaatccagttagcgattaaatcaggatgcttctcctatcaaatctga
ggtcatttcatttcaacaaatattgttaaacattttaataggctctggga
ataaaaagataagacagcataaactgtcagagctgcagacttatccagtg
ggatggagaagggagattgaatgaaacaggccttttaggggatggaggat
atacacaccagggagggcccatgaggcattcatagttttcatagagacac
aggaaggctgaagtggagacaaagatgaacttagaaagaattctccttta
tatgtaaatgtattagaaaagccagatttactcagttgaccaataaaaaa
taaccaaagagcatgtattgaaagacctaaattctagaagtagagtaatt
atgacaaaaaagggccatctgcccttgtgtcatcttcaattaacataaaa
aacaataataactgtagtccataagacatgacccatttgattgtatgtac
tattacagttacttacccactattacaaacaccatgttacaaattttatg
attttcacttctaaccacttcaaacaaatctttgtgttttgtataagcag
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_115705080_115706201
seq2: B6Ng01-273P21.b_50_1169

seq1  GAATTCACTCCGTAGAATCTGTTCTCTTTTCCTGTCTCAAAGCCATGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCGTAGAATCTGTTCTCTTTTCCTGTCTCAAAGCCATGGCT  50

seq1  TCTACATCTTAATTCTGTTCGAGGTTCACATGAGGTCAACTTTGACTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCTTAATTCTGTTCGAGGTTCACATGAGGTCAACTTTGACTGTG  100

seq1  GATAGTGTGTCCATAGATGAAGCCTGGGCAAGTTCATGTTTCTTTCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGTGTCCATAGATGAAGCCTGGGCAAGTTCATGTTTCTTTCACTC  150

seq1  AGGAAGAAGAAGATATATCACAGCTCATGAGAGAAGTTCCAGGGACTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAGAAGATATATCACAGCTCATGAGAGAAGTTCCAGGGACTCTT  200

seq1  CAAGAAGCATGGGAATAGAATATCTCTTTGTATTGTTGGTTGTATCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCATGGGAATAGAATATCTCTTTGTATTGTTGGTTGTATCCAAT  250

seq1  AAAAGAGAGTGTGTTCTTGGAGCTATTGACAGACATCATCCCTGTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGTGTGTTCTTGGAGCTATTGACAGACATCATCCCTGTCAGAA  300

seq1  TGTCTTGTGGTGCCAAACCTGTGATCTTTATATATTTGGTAGTTTACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTGGTGCCAAACCTGTGATCTTTATATATTTGGTAGTTTACCAA  350

seq1  CTAACTAAATATCTGTGTGACATACATTTTTCTTACAGAGTAGTGTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAAATATCTGTGTGACATACATTTTTCTTACAGAGTAGTGTCTTA  400

seq1  CTATAGTGGTGATATTTGGTTTATTAAACTCCTATCATTTATTATTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTGGTGATATTTGGTTTATTAAACTCCTATCATTTATTATTTTGT  450

seq1  GCATCATTATTAGGCTTATTTAGTGTATTAGAAGGTGAGGTTTGAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATTATTAGGCTTATTTAGTGTATTAGAAGGTGAGGTTTGAGGAAA  500

seq1  ACAATCAAACATGTAATTGGTATAAAGCAGTCTTTTGTTAAGATGAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAAACATGTAATTGGTATAAAGCAGTCTTTTGTTAAGATGAATAT  550

seq1  ATTTTCCCTACTTTCTTCACAAAACTAGTAGTCACCAAAAAGAAACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCTACTTTCTTCACAAAACTAGTAGTCACCAAAAAGAAACCAAA  600

seq1  TTGCATCACTAAAAATGACATTACTACATCAAAATATATAGCAACCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCACTAAAAATGACATTACTACATCAAAATATATAGCAACCTTTT  650

seq1  ATGTATTTTATATATTAATTTAGGATCTATAGCTATAGCTATCTTCCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTATATATTAATTTAGGATCTATAGCTATAGCTATCTTCCTAT  700

seq1  CTATCATATACATATATATTTAGACAACTCTGTAGATGTTTTGATTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATATACATATATATTTAGACAACTCTGTAGATGTTTTGATTTAGG  750

seq1  ATGTTGATCACTTTCTGATTTATACTTTTTAGAAAGTTCATAAGAGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATCACTTTCTGATTTATACTTTTTAGAAAGTTCATAAGAGTATT  800

seq1  TAAATGTGAATTGATATACTGAACATAGAAATATGAGAAAAATATTTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGAATTGATATACTGAACATAGAAATATGAGAAAAATATTTAAC  850

seq1  TTAAGACTAAAGCAAGATACTAGTCCCCTATCTGATTTAGGATTGGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACTAAAGCAAGATACTAGTCCCCTATCTGATTTAGGATTGGTAAA  900

seq1  GATCCATTCCCAATCAGTTGGTGGCCTTTTTGTCTTATTGACAGTATCTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATCCATTCCCAATCAGTTGGTGGCCTTTTTGTCTTATTGACAGTATC-T  949

seq1  TTGCCTTACAGAAGCTTTGCCATTTTATGAGGTCCCATTTGTCAATTCTC  1000
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  TTGCCTTACAGAAGCTTTGCCATTTTATGAGGTCC--ATTGTCAATTCTC  997

seq1  GATCTTACAGCACAA-GCCATTGCTGTTCTGTTCAGGAATGTTTCCCCT-  1048
      ||||||||||||||| ||||||||||||||||||||||   |||||||| 
seq2  GATCTTACAGCACAAGGCCATTGCTGTTCTGTTCAGGATGTTTTCCCCTT  1047

seq1  -GTGCCCATATCTTCGAGGCTTTTCTCCACTTTCTCCTCTATAAGTTTCA  1097
       ||||||||||| ||||||||||||||||||||||| ||||| |||||||
seq2  GGTGCCCATATCCTCGAGGCTTTTCTCCACTTTCTCTTCTAT-AGTTTCA  1096

seq1  CTATCTCCAGTTTTATGTGGAGTTC  1122
      |||||| ||| ||||||||||||||
seq2  CTATCT-CAGGTTTATGTGGAGTTC  1120


seq1: chr14_115787155_115788259
seq2: B6Ng01-273P21.g_67_1167 (reverse)

seq1  GCTGCTTATACAACAC---AAGATTTGTTTTGGAAGTGGTTAG-AGTGAA  46
      ||||||||||||| ||   |||||||||||  ||||||||||| ||||||
seq2  GCTGCTTATACAAAACACAAAGATTTGTTT--GAAGTGGTTAGAAGTGAA  48

seq1  AATCATAAAATTTGGTAACATGGTG-TTGT-ATAGTTGGGTAGGTAACCT  94
      ||||||||||||| ||||||||||| |||| |||| |||||| |||||  
seq2  AATCATAAAATTT-GTAACATGGTGTTTGTAATAG-TGGGTAAGTAAC--  94

seq1  TGTAATTAGTACATACAATCAAATGGGTCATTGTCTTTATGGACTACAGT  144
      ||||| |||||||||||||||||||||||| |||| ||||||||||||||
seq2  TGTAA-TAGTACATACAATCAAATGGGTCA-TGTC-TTATGGACTACAGT  141

seq1  TATTATTGTTTTTTATGTTTAATTGAAGATGACACAAGGGCAGATGGCCC  194
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATTATTGTTTTTTATG-TTAATTGAAGATGACACAAGGGCAGATGGCCC  190

seq1  TTTTTTGTCATAATTACTCTACTTCTAGAATTTAGGTCTTTCAATACATG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTCATAATTACTCTACTTCTAGAATTTAGGTCTTTCAATACATG  240

seq1  CTCTTTGGTTATTTTTTATTGGTCAACTGAGTAAATCTGGCTTTTCTAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGTTATTTTTTATTGGTCAACTGAGTAAATCTGGCTTTTCTAAT  290

seq1  ACATTTACATATAAAGGAGAATTCTTTCTAAGTTCATCTTTGTCTCCACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACATATAAAGGAGAATTCTTTCTAAGTTCATCTTTGTCTCCACT  340

seq1  TCAGCCTTCCTGTGTCTCTATGAAAACTATGAATGCCTCATGGGCCCTCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTCCTGTGTCTCTATGAAAACTATGAATGCCTCATGGGCCCTCC  390

seq1  CTGGTGTGTATATCCTCCATCCCCTAAAAGGCCTGTTTCATTCAATCTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTATATCCTCCATCCCCTAAAAGGCCTGTTTCATTCAATCTCC  440

seq1  CTTCTCCATCCCACTGGATAAGTCTGCAGCTCTGACAGTTTATGCTGTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCATCCCACTGGATAAGTCTGCAGCTCTGACAGTTTATGCTGTCT  490

seq1  TATCTTTTTATTCCCAGAGCCTATTAAAATGTTTAACAATATTTGTTGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTATTCCCAGAGCCTATTAAAATGTTTAACAATATTTGTTGAA  540

seq1  ATGAAATGACCTCAGATTTGATAGGAGAAGCATCCTGATTTAATCGCTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGACCTCAGATTTGATAGGAGAAGCATCCTGATTTAATCGCTAA  590

seq1  CTGGATTTAATTACATTCATTTACAGTTTTTCACTGAAACTTAAATTATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTAATTACATTCATTTACAGTTTTTCACTGAAACTTAAATTATT  640

seq1  AACATTTCCTGTCCTCGTGAGAGCACCTCCACAGAACTGTTTTAATTTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCCTGTCCTCGTGAGAGCACCTCCACAGAACTGTTTTAATTTCT  690

seq1  GTTTCTCTCAATGAGTAAACAATGTATAACGTCAAAGCTCTTACACAGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTCAATGAGTAAACAATGTATAACGTCAAAGCTCTTACACAGAA  740

seq1  AACTTGGTGCTATTGATATTATATATGTATTTATCTTAAGCCCTGTCATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTGCTATTGATATTATATATGTATTTATCTTAAGCCCTGTCATA  790

seq1  CTATTTATCAGATTGGGTTATTAGAAACAAGGCAAAGATTAAAAATAACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATCAGATTGGGTTATTAGAAACAAGGCAAAGATTAAAAATAACA  840

seq1  AGCACGAAAAACACATTATAATGGTCCATTTGATTTTTCGGTAAATAGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGAAAAACACATTATAATGGTCCATTTGATTTTTCGGTAAATAGCT  890

seq1  CTAGGTGCATTCCGTGTCAGTTTTCCATCCTTTCCTTATCAGAACTGAAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGCATTCCGTGTCAGTTTTCCATCCTTTCCTTATCAGAACTGAAC  940

seq1  TAATAGACATTTAGCATCTCCATTCTATGGTAAAGGCAGTTTCCAGGGCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGACATTTAGCATCTCCATTCTATGGTAAAGGCAGTTTCCAGGGCT  990

seq1  GAAGCTATTTCTAGGGGCTAGAGGAAGCCTCCACTGTCAGTATAAGTGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTATTTCTAGGGGCTAGAGGAAGCCTCCACTGTCAGTATAAGTGTT  1040

seq1  TGTTAGATGCTGTGAGATTATGCCTCATTTAAATAATTCTTTCTGTTCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATGCTGTGAGATTATGCCTCATTTAAATAATTCTTTCTGTTCAT  1090

seq1  CTTAAGAATTC  1105
      |||||||||||
seq2  CTTAAGAATTC  1101


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