BAC Information

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BAC

Clone NameB6Ng01-274D14
Chromosome17 (Build37)14 (Build37)
Map Location 82,095,756 - 82,096,87153,102,389 - 53,102,753
singlet/doubletsingletsinglet
Overlap geneSlc8a1
Upstream geneMap4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274D14.bB6Ng01-274D14.g
ACCGA075583GA075584
length1,125799
definitionB6Ng01-274D14.b B6Ng01-274D14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,095,756 - 82,096,871)(53,102,389 - 53,102,753)
sequence
gaattcattctgtacaccaggctggcctcgaactcagaaatccacctgcc
tgtgccttcaagtgctgggattaaagtgtgccaccattgcctggctagct
atgggatttttaacaggatgcccaagagcagtgaacaatggtacccgttg
atgacatgtattggaacagagttctctctctgtaaccgctaatcttcgta
ctcgcagcttccatttcctttggtgggagcatgcacacaatgagcataag
aaagccttatcgtgtgcttagttaccagttagtggaccagaaagggaaat
ttcatactgaatgaaaacataaacaaattctcagagaaggaaacggatac
aatggtgagattaaacttaccattcaatgtctaatgcccctgaatgctca
gggcttgtgaaggatttagtagtgtttctcttgcctcctctagagttatt
agtgcttttctcaattaaggactatgagagctgcccttactaaactagct
gtgataatagttaatattcattcaatattatccaccattgttcaggctac
ttatacatttgactttttttttaaactttctgaacagccttttgacctag
acacttatgtcctctctcctttggacataagagaatagaagcatctagac
aggttgaataaaccaggcagtttgtttcaggagcatgagatcttcactac
aaagttcggctgtaaaactttctgaagctcgacaagaattcatgttagtg
agcctttaatatctctatggacaaatagattccaacaagtctctgtattt
actgaggaccttggtgggagaaggaagtcataatgggtacataacatggc
aattgtcttgcagagaaatagatgttctgcagtgaccaaggctcctgtct
ttaaattatcttaacgtcaacaaaatttcatacatattttaaaatgtatt
tattggtgaatcaatgtcttagattatcaaggagtcacgctttgaggacc
ccttctactttttaaaacttagcctgagctctaaacaactgctatctatg
tgaaataaacgtctaataggtattaattattaaaattaaaaatagaaaac
tgtagtataattaattcattagaaa
gaattctcacctgcaggaatacagaatggctgagaagcacctgaaaaagt
tttcagcatccttaatcatcagggaaatgcaaatcaatacaatcctgaaa
ttctgcctcacaccagtcagaatggctaagatgaaaaattcaggtgacag
cagatgctggcaaggatgtggagaaagaggaacactcccccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctc
aaaagattggaggatacatagtactaccagaggatactgcaatacctctc
ctgggcatatatccagaagatggttcaaccagtaataaggacacatgctc
cactatgttcataacagccttatttataatagccagaaactggaaagaac
ccagatgcccctcaacagaggaatagatacagaaaatgtggtacatttac
acaataaagttctactcagctattaaaaagaatgaatttatgaaattcct
aggtaaatgaatggacctggagggcatcatcctgagtgaggtaactcaat
cagaaaagaactcacatgatatgtgctcactgataagtggatattagctc
agaaactttagaatacacaagatataagatacaatttgtgaaacacatga
agcttgggaagaacgaagaccaaaggttttggatactttgccccttcttg
gaactgggagcaaggcacccatggaaggagctacagagacagagtttgga
gctgagacgaaaggatggaccaatcttagagactgccctacccagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82095756_82096871
seq2: B6Ng01-274D14.b_41_1165

seq1  GAATTCATTCTGTACACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGTACACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50

seq1  TGTGCCTTCAAGTGCTGGGATTAAAGTGTGCCACCATTGCCTGGCTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTCAAGTGCTGGGATTAAAGTGTGCCACCATTGCCTGGCTAGCT  100

seq1  ATGGGATTTTTAACAGGATGCCCAAGAGCAGTGAACAATGGTACCCGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTTTTAACAGGATGCCCAAGAGCAGTGAACAATGGTACCCGTTG  150

seq1  ATGACATGTATTGGAACAGAGTTCTCTCTCTGTAACCGCTAATCTTCGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGTATTGGAACAGAGTTCTCTCTCTGTAACCGCTAATCTTCGTA  200

seq1  CTCGCAGCTTCCATTTCCTTTGGTGGGAGCATGCACACAATGAGCATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCAGCTTCCATTTCCTTTGGTGGGAGCATGCACACAATGAGCATAAG  250

seq1  AAAGCCTTATCGTGTGCTTAGTTACCAGTTAGTGGACCAGAAAGGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTATCGTGTGCTTAGTTACCAGTTAGTGGACCAGAAAGGGAAAT  300

seq1  TTCATACTGAATGAAAACATAAACAAATTCTCAGAGAAGGAAACGGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTGAATGAAAACATAAACAAATTCTCAGAGAAGGAAACGGATAC  350

seq1  AATGGTGAGATTAAACTTACCATTCAATGTCTAATGCCCCTGAATGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGAGATTAAACTTACCATTCAATGTCTAATGCCCCTGAATGCTCA  400

seq1  GGGCTTGTGAAGGATTTAGTAGTGTTTCTCTTGCCTCCTCTAGAGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGTGAAGGATTTAGTAGTGTTTCTCTTGCCTCCTCTAGAGTTATT  450

seq1  AGTGCTTTTCTCAATTAAGGACTATGAGAGCTGCCCTTACTAAACTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTCTCAATTAAGGACTATGAGAGCTGCCCTTACTAAACTAGCT  500

seq1  GTGATAATAGTTAATATTCATTCAATATTATCCACCATTGTTCAGGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATAGTTAATATTCATTCAATATTATCCACCATTGTTCAGGCTAC  550

seq1  TTATACATTTGACTTTTTTTTTAAACTTTCTGAACAGCCTTTTGACCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATTTGACTTTTTTTTTAAACTTTCTGAACAGCCTTTTGACCTAG  600

seq1  ACACTTATGTCCTCTCTCCTTTGGACATAAGAGAATAGAAGCATCTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATGTCCTCTCTCCTTTGGACATAAGAGAATAGAAGCATCTAGAC  650

seq1  AGGTTGAATAAACCAGGCAGTTTGTTTCAGGAGCATGAGATCTTCACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAATAAACCAGGCAGTTTGTTTCAGGAGCATGAGATCTTCACTAC  700

seq1  AAAGTTCGGCTGTAAAACTTTCTGAAGCTCGACAAGAATTCATGTTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCGGCTGTAAAACTTTCTGAAGCTCGACAAGAATTCATGTTAGTG  750

seq1  AGCCTTTAATATCTCTATGGACAAATAGATTCCAACAAGTCTCTGTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTAATATCTCTATGGACAAATAGATTCCAACAAGTCTCTGTATTT  800

seq1  ACTGAGGACCTTGGTGGGAGAAGGAAGTCATAATGGGTACATAACATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGACCTTGGTGGGAGAAGGAAGTCATAATGGGTACATAACATGGC  850

seq1  AATTGTCTTGCAGAGAAATAGATGTTCTGCAGTGACCAAGGCTCCTGTC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTGTCTTGCAGAGAAATAGATGTTCTGCAGTGACCAAGGCTCCTGTCT  900

seq1  TTAAATTATCTTAACGTCAACAAAATTCAATACATATTTTAAAATGTATT  949
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  TTAAATTATCTTAACGTCAACAAAATTTCATACATATTTTAAAATGTATT  950

seq1  TATTGGTGAATCAATGTCTTAGATTATC-AGGAGTCACGCTTTGAGGACC  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TATTGGTGAATCAATGTCTTAGATTATCAAGGAGTCACGCTTTGAGGACC  1000

seq1  CC-TCTAC-TTTTAAAACTTAGCCTGAGCTCTAAACAACTGCTATCTATG  1046
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTACTTTTTAAAACTTAGCCTGAGCTCTAAACAACTGCTATCTATG  1050

seq1  TGAA--TAACGTCT-ATAGGTATTAA-TATTAAAAATTAAAATAG-AAAC  1091
      ||||   ||||||| ||||||||||| |||||||| | ||||||| ||||
seq2  TGAAATAAACGTCTAATAGGTATTAATTATTAAAATTAAAAATAGAAAAC  1100

seq1  TGTAGTATAATT-ATTCATTTAGAAA  1116
      |||||||||||| ||||| |||||||
seq2  TGTAGTATAATTAATTCA-TTAGAAA  1125

seq1: chr14_53102389_53102753
seq2: B6Ng01-274D14.g_816_865 (reverse)

seq1  ATCCCCGGGTATGGCAGTCTCT-AGA-TGGTCCATCCTTTCATCTCAGCT  48
      ||||| ||||| |||||||||| ||| |||||||||||||| ||||||||
seq2  ATCCCTGGGTAGGGCAGTCTCTAAGATTGGTCCATCCTTTCGTCTCAGCT  50

seq1  CGGCACTATGATTTTTTTTTGTATACATATAAGTATTATTAAATGCTGTG  98
                                                        
seq2  --------------------------------------------------  50

seq1  TTTTAAAATAATCTAGTTAAAATTTTAAGCTAATAGTCATTAAAACAAGC  148
                                                        
seq2  --------------------------------------------------  50

seq1  TGCTGTTGAAGAATGCTGTCTTAGGGGGTGACTTCGCTGGCTGTTGGCTT  198
                                                        
seq2  --------------------------------------------------  50

seq1  GGGCTTCACTTGTATATTGAGCACATAGTCATGGCGGAAGGATGAGCGGA  248
                                                        
seq2  --------------------------------------------------  50

seq1  CGGTGCGATTCATCAGCGGCTGAAGAGGGCGGAAGTTGTCCACCATTCTT  298
                                                        
seq2  --------------------------------------------------  50

seq1  TTCTCTCCTCGGAAGTGAAAAGCAGGGTCCGAAACTGCTCAAGCTGGTCC  348
                                                        
seq2  --------------------------------------------------  50

seq1  ATCCTTTCGTCTCAGCT  365
                       
seq2  -----------------  50