BAC Information

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BAC

Clone NameB6Ng01-274I02
Chromosome14 (Build37)
Map Location 30,413,949 - 30,415,113
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneLrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274I02.bB6Ng01-274I02.g
ACCGA075790GA075791
length1,1551,189
definitionB6Ng01-274I02.b B6Ng01-274I02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgaggaataactaaacctgggtgtagtggtgaggaagagcttg
taagcagagtgtacaggctgagttacaggacacaaacctgggagcaacca
gcttgaaaaggttagggaagagctcgctagaacagcctgggaagggccta
gaataggctctaagaactatgctccattataggcaacgaaagagtggtgc
tgggcttccaagcaaaagaggcagcagacagaaatgctaccacaggagag
gtggcctcggaaatgttacaaacaacagtccagccagaagggtcctctga
tcgctgaggagaggcatactaaaaggcagatttttcattgtgaatttccc
ataattggtgtattatttcaagtagcaaggtaattaatactcatgtggct
ttctgccaatgtgtgtcctgatgctacattttgttcagtaatttgtgaag
ttgaagagtggtcacagcattagtaggacctacaagacccatagctgccc
ttcctttacatagcaaagctctgccagatggccaagtaaaggctatgttt
ggtttggaaaatttcaagatgacaacaatatatttatataaaggctcagt
gggttttaatgcccaaataagtcaactctcttcaactctataaatttacc
actaaatcaaacatgactctatgtttaaaggggagaatctgggctaagac
agtttttgacacaagaggaaaatgtgagcaatagactgctaatggccatt
gtatgtgtgaaatctttaggtgcctctcttctctctataaccaaaaactc
atctcactgatggtgagatcagggaggctgcctatactcaactgagacta
ttctagtgctttgatctgcatttgacagtgcctttgagctggggctggag
gacaggaaagaggtcctattaatgtttttcacaaaagatcccaatgataa
atatcccaaggctgtagataaggttgcctttatagtagtgcacaacacac
agaagctgctgtgagaccatttccccatatcttctgggtcatttctatca
ttctgaaaagagattttctgatgaagatctacaaggacttacttaattca
aatacacttacagtatagcacagcaatgcagtcactctagcgtgaccaat
gctaa
gaattcaaccctaaagattaattcaacattgcctgccaactcctggaccc
attgccatggtgcccaattgcctagctgctgtctggatgaacatatatat
gctacttcagagctgctgcataggcccctgaagttacaatatgaatgggc
ccatgtgttggggttggtctcgtgctactatgtattcagatgctaaatac
tgggccccaagatccagttgcctgccccccatgagaagatcctcatgtac
accaagtagttacttgatgtgtaaccttgttatgcaccgtgctatgtaag
ctcactccccaagttaactagtcactaaaaagcctaggattgaggtggat
ggggttttagttacttggctaggggtcacggtaaagagggagaagaagaa
aggagaccaagaaagccgccatgagaggagacggaccatgagcacatggc
tagaagaaacagccagtaacaagggccttataactgggatgtaagttaga
atagttcaaaatctgcccaatctaggctcagaacttataataaaatagct
agattgtgtgttttttatatggtctagttagggtatataattccttctac
atccctgggagccatgcttggccaggcatccgtttattggttagtgtatt
aaatactgctgtgtactgagttaagccacccttcaaatgaaaaggaaaga
cattttacatttcagagtgctgggagtcaggaagtcaggaccagtttaac
tggactctttgctttggagtccaaggctacagtcatcttagggctggact
ggaaagcaccgattaccattgtacatcaaatacatgtaataatgagaacg
ggtgaagcttccagtggatgttggcctgggcctttagttccttcaacggg
ctatttggctagagaacacccgcttagctcctttactatgtaaggccctt
ctgatagggcagctagaaatgtggcacccggcttaattagaacagtgaaa
gacagcagaagagcaagccttgctggctcttttgtaggttagtttctgga
gacaccacctctctcactttcacatttaagttgccttagaggcaattcac
ttaggtacaggtcactaatttcagggaagtactcattgtcctattgatac
acgcgatcggatagtggacatacatctgccttgcacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30413949_30415113
seq2: B6Ng01-274I02.b_43_1197

seq1  GAATTCATGAGGAATAACTAAACCTGGGTGTAGTGGTGAGGAAGAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGGAATAACTAAACCTGGGTGTAGTGGTGAGGAAGAGCTTG  50

seq1  TAAGCAGAGTGTACAGGCTGAGTTACAGGACACAAACCTGGGAGCAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGAGTGTACAGGCTGAGTTACAGGACACAAACCTGGGAGCAACCA  100

seq1  GCTTGAAAAGGTTAGGGAAGAGCTCGCTAGAACAGCCTGGGAAGGGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAAAGGTTAGGGAAGAGCTCGCTAGAACAGCCTGGGAAGGGCCTA  150

seq1  GAATAGGCTCTAAGAACTATGCTCCATTATAGGCAACGAAAGAGTGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGCTCTAAGAACTATGCTCCATTATAGGCAACGAAAGAGTGGTGC  200

seq1  TGGGCTTCCAAGCAAAAGAGGCAGCAGACAGAAATGCTACCACAGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCCAAGCAAAAGAGGCAGCAGACAGAAATGCTACCACAGGAGAG  250

seq1  GTGGCCTCGGAAATGTTACAAACAACAGTCCAGCCAGAAGGGTCCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTCGGAAATGTTACAAACAACAGTCCAGCCAGAAGGGTCCTCTGA  300

seq1  TCGCTGAGGAGAGGCATACTAAAAGGCAGATTTTTCATTGTGAATTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGAGGAGAGGCATACTAAAAGGCAGATTTTTCATTGTGAATTTCCC  350

seq1  ATAATTGGTGTATTATTTCAAGTAGCAAGGTAATTAATACTCATGTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGGTGTATTATTTCAAGTAGCAAGGTAATTAATACTCATGTGGCT  400

seq1  TTCTGCCAATGTGTGTCCTGATGCTACATTTTGTTCAGTAATTTGTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAATGTGTGTCCTGATGCTACATTTTGTTCAGTAATTTGTGAAG  450

seq1  TTGAAGAGTGGTCACAGCATTAGTAGGACCTACAAGACCCATAGCTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGTGGTCACAGCATTAGTAGGACCTACAAGACCCATAGCTGCCC  500

seq1  TTCCTTTACATAGCAAAGCTCTGCCAGATGGCCAAGTAAAGGCTATGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTACATAGCAAAGCTCTGCCAGATGGCCAAGTAAAGGCTATGTTT  550

seq1  GGTTTGGAAAATTTCAAGATGACAACAATATATTTATATAAAGGCTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGAAAATTTCAAGATGACAACAATATATTTATATAAAGGCTCAGT  600

seq1  GGGTTTTAATGCCCAAATAAGTCAACTCTCTTCAACTCTATAAATTTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTAATGCCCAAATAAGTCAACTCTCTTCAACTCTATAAATTTACC  650

seq1  ACTAAATCAAACATGACTCTATGTTTAAAGGGGAGAATCTGGGCTAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATCAAACATGACTCTATGTTTAAAGGGGAGAATCTGGGCTAAGAC  700

seq1  AGTTTTTGACACAAGAGGAAAATGTGAGCAATAGACTGCTAATGGCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGACACAAGAGGAAAATGTGAGCAATAGACTGCTAATGGCCATT  750

seq1  GTATGTGTGAAATCTTTAGGTGCCTCTCTTCTCTCTATAACCAAAAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGAAATCTTTAGGTGCCTCTCTTCTCTCTATAACCAAAAACTC  800

seq1  ATCTCACTGATGGTGAGATCAGGGAGGCTGCCTATACTCAACTGAGACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTGATGGTGAGATCAGGGAGGCTGCCTATACTCAACTGAGACTA  850

seq1  TTCTAGTGCTTTGATCTGCATTTGACAGTGCCTTTGAGCTGGGGCTGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGCTTTGATCTGCATTTGACAGTGCCTTTGAGCTGGGGCTGGAG  900

seq1  GACAGG-AAGAGGTCCTATTAATGTTTTTCACAAAAGATCCCAATGATAA  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAAGAGGTCCTATTAATGTTTTTCACAAAAGATCCCAATGATAA  950

seq1  ATATCCC-AGGCTGTAGATAAGGTTGCCTTTATAGTAGTTGCACCAACAC  998
      ||||||| |||||||||||||||||||||||||||||| |||| ||||||
seq2  ATATCCCAAGGCTGTAGATAAGGTTGCCTTTATAGTAG-TGCA-CAACAC  998

seq1  ACAGAAGCTGCTGTGAAGACCATTTCCCCATATCTTCTTGGTCATTTCTA  1048
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  ACAGAAGCTGCTGTG-AGACCATTTCCCCATATCTTCTGGGTCATTTCTA  1047

seq1  TCATTCCTGAAAAGGAAGA-TTTCTGATGAAGATACTACAAAGAACTTAC  1097
      ||||| ||||||||  ||| |||||||||||||| |||| ||| ||||||
seq2  TCATT-CTGAAAAG--AGATTTTCTGATGAAGAT-CTAC-AAGGACTTAC  1092

seq1  TTTAATTCAAATACACTTACAGTAATAGCAACAGCAATGCAAGTCACTCT  1147
       |||||||||||||||||||||| ||||| |||||||||| |||||||||
seq2  -TTAATTCAAATACACTTACAGT-ATAGC-ACAGCAATGC-AGTCACTCT  1138

seq1  AGCGTTGACACATGCTAA  1165
      |||| ||||  |||||||
seq2  AGCG-TGACCAATGCTAA  1155