BAC Information

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BAC

Clone NameB6Ng01-277A20
Chromosome14 (Build37)
Map Location 47,327,454 - 47,540,894
singlet/doubletdoublet
Overlap geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4
Upstream geneEG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
Downstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277A20.bB6Ng01-277A20.g
ACCGA077674GA077675
length1,1811,134
definitionB6Ng01-277A20.b B6Ng01-277A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,327,454 - 47,328,597)(47,539,761 - 47,540,894)
sequence
gaattcttagcttcccttttcttaggtgaaatattggatgacatcacttt
tatgcttaatcaattgtcttcatcctagtaaagacaatgccactctccaa
tttgtttggatttttttttcaaagcatggtctaatgcatggatttgttct
ctatctatgatagagtcataaatgaaagattctaatgtgatttcactagt
gtatatccgtttaactcaatgaaaagaggttagatagtatatgaaccata
ttatataaaaaatacacaaaacaaaagattcttttattttgctttgttgg
ttggttgggggtttgtttgcgacaaggtttcacaaagtagcccaggcttg
ccttagactcacagttctcttgcatgagtcccccacgtgctggggttata
ggtgtgtgctaccttgccaggcttaagaaatgagtcttaaagaagaagtg
tttattagttatatatttccgcattattgagatggataaaacaggagtta
agctcacaaggaactggaaccatagggtgtggagtccagcattgaaacag
atgaccagaatgcaatggggcaccaatagtgggaactcatgtcaccccaa
agaaggtgcaggagggcaggcagagtaggaagcagtcactctgcctgcgc
atattttctccttttaaatctctaatactccttctaacccataaaatagc
ccagaatggacagattgaaattgtcttcaagcaacaaaaaacaaacaaca
aaaacaacagcaacaaaagaccctttgtgtttccctaggccaagatacat
aattaagcacagggtgctcaaagaccgggagttctctgcatgacgaagat
catcatcagttggaagaccatgctgttctgggaggcaggggaaagtcctg
cccccttgtttactccctaaaaagctcaggatggggcatcttaccatttg
aaactaaaatacaacaatttcaacagccggcttctcctccattaatagga
agaacatcaagagccaggccaactgtcactcttgaaggaaatagaatgta
gtagactaatagcctcaaccataaaagtcaccctgtgattttggatgcct
tagcccagtgaagtcatgctgaagtccattaaaagaaatgttaaatcata
aggctacagaagttggcctagtttcacttgc
gaattctgaactctgtgctagaaatacttgatagtgctgtgaagtcagaa
tgctttcaacagcatttcccacataagagaaaaaaatgtaaaataaataa
ataaataaataaataaataaataaataaataaataaataaataaataaca
acctacaggttctctctggccacacgctaaagagatggggaggagaacta
ttttaagggctaaggacacgatagcatgccaacttcaaaactttccaagt
cattaaatctctggatttttgaaaatgaagatttcctagaagagctcaaa
gaaaagcactaaatgcaactctagagcagaggccttgtgcaccatgctgt
aagcctggtagcgattctacaccaggaaaagcagtgggccggtgctcttc
atcttcacaaggttatcccacctgcctcagggaaatgcacagcaggctcg
cccccacagcctgacaatgtagggcaaactctgcctgcctcccacagagg
cgcctggtgggagcacacaaatgccacagaggcagtggctcccagcaaca
cacacaaacagcttgtcaacatcaaggctgcacaaacctgtgccacccat
tggcagggcacgcaccctgaaaactggaactactacagaggctggggcca
ggatacaggagcattactgcaaaatgaacatggacaacctgatggagggc
atcctcctctctctctttctctctctcacacacacacctctgtcacgttg
ccagaactaaggcacacatgtctatgctagtccttagagcagaaagaaca
tgtttcatgtctcctaaaaggcagggctgctccttaaattacttaaaaca
aacaaacaaaagccttctacatctcccttagaagcatggacaggtaaaat
gggcatgtaataggccacctgtcaaaatttagattcattttttattttaa
tcatgctctagtctgtctctagcaagcaatcagaggaatgagggcacttt
gcttataaatacccaacagagtgttaataagcatatgagcttctaaaaca
attcttatagggcagaacagagcagtgcctgaaaggagaacgattctctc
aagtttgaacagcacagttgtcctggatcctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_47327454_47328597
seq2: B6Ng01-277A20.b_42_1222

seq1  GAATTCTTAGCTTCCCTTTTCTTAGGTGAAATATTGGATGACATCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCTTCCCTTTTCTTAGGTGAAATATTGGATGACATCACTTT  50

seq1  TATGCTTAATCAATTGTCTTCATCCTAGTAAAGACAATGCCACTCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTAATCAATTGTCTTCATCCTAGTAAAGACAATGCCACTCTCCAA  100

seq1  TTTGTTTGGATTTTTTTTTCAAAGCATGGTCTAATGCATGGATTTGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGATTTTTTTTTCAAAGCATGGTCTAATGCATGGATTTGTTCT  150

seq1  CTATCTATGATAGAGTCATAAATGAAAGATTCTAATGTGATTTCACTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATGATAGAGTCATAAATGAAAGATTCTAATGTGATTTCACTAGT  200

seq1  GTATATCCGTTTAACTCAATGAAAAGAGGTTAGATAGTATATGAACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCGTTTAACTCAATGAAAAGAGGTTAGATAGTATATGAACCATA  250

seq1  TTATATAAAAAATACACAAAACAAAAGATTCTTTTATTTTGCTTTGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAAAAATACACAAAACAAAAGATTCTTTTATTTTGCTTTGTTGG  300

seq1  TTGGTTGGGGGTTTGTTTGCGACAAGGTTTCACAAAGTAGCCCAGGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGGGGTTTGTTTGCGACAAGGTTTCACAAAGTAGCCCAGGCTTG  350

seq1  CCTTAGACTCACAGTTCTCTTGCATGAGTCCCCCACGTGCTGGGGTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGACTCACAGTTCTCTTGCATGAGTCCCCCACGTGCTGGGGTTATA  400

seq1  GGTGTGTGCTACCTTGCCAGGCTTAAGAAATGAGTCTTAAAGAAGAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCTACCTTGCCAGGCTTAAGAAATGAGTCTTAAAGAAGAAGTG  450

seq1  TTTATTAGTTATATATTTCCGCATTATTGAGATGGATAAAACAGGAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGTTATATATTTCCGCATTATTGAGATGGATAAAACAGGAGTTA  500

seq1  AGCTCACAAGGAACTGGAACCATAGGGTGTGGAGTCCAGCATTGAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAAGGAACTGGAACCATAGGGTGTGGAGTCCAGCATTGAAACAG  550

seq1  ATGACCAGAATGCAATGGGGCACCAATAGTGGGAACTCATGTCACCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAGAATGCAATGGGGCACCAATAGTGGGAACTCATGTCACCCCAA  600

seq1  AGAAGGTGCAGGAGGGCAGGCAGAGTAGGAAGCAGTCACTCTGCCTGCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGCAGGAGGGCAGGCAGAGTAGGAAGCAGTCACTCTGCCTGCGC  650

seq1  ATATTTTCTCCTTTTAAATCTCTAATACTCCTTCTAACCCATAAAATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTCCTTTTAAATCTCTAATACTCCTTCTAACCCATAAAATAGC  700

seq1  CCAGAATGGACAGATTGAAATTGTCTTCAAGCAACAAAAAACAAACAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGGACAGATTGAAATTGTCTTCAAGCAACAAAAAACAAACAACA  750

seq1  AAAACAACAGCAACAAAAGA-CCTTTGTGTTTCCCTAGGCCAAGATACA-  798
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  AAAACAACAGCAACAAAAGACCCTTTGTGTTTCCCTAGGCCAAGATACAT  800

seq1  AATTAAGCACAGGGTGCTCAAAGACCGGGAG-TCTCTGCATGACGAAGAT  847
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATTAAGCACAGGGTGCTCAAAGACCGGGAGTTCTCTGCATGACGAAGAT  850

seq1  CATCATCAGTTGGAAGACCATGCTG-TCTGGGAGGCAGGGGGAAAGTCCT  896
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  CATCATCAGTTGGAAGACCATGCTGTTCTGGGAGGCA-GGGGAAAGTCCT  899

seq1  GCCCC--TG-TTACTCCCTAAAAAGCTCAGGAT-GGGCATCTTAC--ATT  940
      |||||  || ||||||||||||||||||||||| |||||||||||   ||
seq2  GCCCCCTTGTTTACTCCCTAAAAAGCTCAGGATGGGGCATCTTACCATTT  949

seq1  GAACCT-AAATAC-ACA--TTC-ACAG-CGGC-TCT-CTCCA-TAATAGG  981
      ||| || |||||| |||  ||| |||| |||| ||| ||||| |||||||
seq2  GAAACTAAAATACAACAATTTCAACAGCCGGCTTCTCCTCCATTAATAGG  999

seq1  AAG-ACATCAGGAG-CAGGCCAACTGTCACTCGTG-AGGGAATAG-ATGT  1027
      ||| |||||| ||| ||||||||||||||||| || ||| ||||| ||||
seq2  AAGAACATCAAGAGCCAGGCCAACTGTCACTCTTGAAGGAAATAGAATGT  1049

seq1  AGTAGACT-ATAG-CTCACCAGTAAAAGTCA--CTGTG-TTTTGGATG-C  1071
      |||||||| |||| |||| |  |||||||||  ||||| ||||||||| |
seq2  AGTAGACTAATAGCCTCAACCATAAAAGTCACCCTGTGATTTTGGATGCC  1099

seq1  TTAG-CCAG-GAAGTTATGCTGAGGTC--TTTAAAGAA---TTTAATCCT  1114
      |||| |||| ||||| ||||||| |||  || ||||||   || |||| |
seq2  TTAGCCCAGTGAAGTCATGCTGAAGTCCATTAAAAGAAATGTTAAATCAT  1149

seq1  AAAGGCTACAAA---TTGCCTGGTTTCACTTGC  1144
       ||||||||| |   | |||| |||||||||||
seq2  -AAGGCTACAGAAGTTGGCCTAGTTTCACTTGC  1181

seq1: chr14_47539761_47540894
seq2: B6Ng01-277A20.g_66_1199 (reverse)

seq1  TTTAGGATCCAAGGAACAAACTTGTGCTG-TCAAACTTGGAGAGGAATCG  49
      |||||||||||  | ||||   ||||||| |||||||| |||| ||||||
seq2  TTTAGGATCCA--GGACAA--CTGTGCTGTTCAAACTT-GAGA-GAATCG  44

seq1  -TCTCCTCTCAGCCACTGCTCTGTTCCTGCCCTAT-AGA--TGTTTTAAG  95
       |||||| |||| |||||||||||| ||||||||| |||  |||||| ||
seq2  TTCTCCTTTCAGGCACTGCTCTGTT-CTGCCCTATAAGAATTGTTTT-AG  92

seq1  AAGCTCATATGCTTA-TAACACTCCTGTTGGGTATTTATAAGC-AAGTGC  143
      ||||||||||||||| ||||||| ||||||||||||||||||| ||||||
seq2  AAGCTCATATGCTTATTAACACT-CTGTTGGGTATTTATAAGCAAAGTGC  141

seq1  CCTCATTCCTCTGATTGCTTTGCTAGAGACAGACTAGAGCATGATTTAAA  193
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  CCTCATTCCTCTGATTGC-TTGCTAGAGACAGACTAGAGCATGA-TTAAA  189

seq1  ATAAAAAATGAATCTAAATTTTGACAGGT-GCCTATTACATGCCCATTTT  242
      ||||||||||||||||||||||||||||| ||||||||||||||||  ||
seq2  ATAAAAAATGAATCTAAATTTTGACAGGTGGCCTATTACATGCCCA--TT  237

seq1  TTACCTGTCCATGCTTCTAA-GGAGATGTAGAAGGCTTTTGTTTGTTTGT  291
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTACCTGTCCATGCTTCTAAGGGAGATGTAGAAGGCTTTTGTTTGTTTGT  287

seq1  TTTAAGTAATTTAAGGAGCAGCCCTGCCTTTTAGGAGACATGAAACATGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAATTTAAGGAGCAGCCCTGCCTTTTAGGAGACATGAAACATGT  337

seq1  TCTTTCTGCTCTAAGGACTAGCATAGACATGTGTGCCTTAGTTCTGGCAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGCTCTAAGGACTAGCATAGACATGTGTGCCTTAGTTCTGGCAA  387

seq1  CGTGACAGAGGTGTGTGTGTGAGAGAGAGAAAGAGAGAGAGGAGGATGCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACAGAGGTGTGTGTGTGAGAGAGAGAAAGAGAGAGAGGAGGATGCC  437

seq1  CTCCATCAGGTTGTCCATGTTCATTTTGCAGTAATGCTCCTGTATCCTGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCAGGTTGTCCATGTTCATTTTGCAGTAATGCTCCTGTATCCTGG  487

seq1  CCCCAGCCTCTGTAGTAGTTCCAGTTTTCAGGGTGCGTGCCCTGCCAATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCTCTGTAGTAGTTCCAGTTTTCAGGGTGCGTGCCCTGCCAATG  537

seq1  GGTGGCACAGGTTTGTGCAGCCTTGATGTTGACAAGCTGTTTGTGTGTGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACAGGTTTGTGCAGCCTTGATGTTGACAAGCTGTTTGTGTGTGT  587

seq1  TGCTGGGAGCCACTGCCTCTGTGGCATTTGTGTGCTCCCACCAGGCGCCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAGCCACTGCCTCTGTGGCATTTGTGTGCTCCCACCAGGCGCCT  637

seq1  CTGTGGGAGGCAGGCAGAGTTTGCCCTACATTGTCAGGCTGTGGGGGCGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAGGCAGGCAGAGTTTGCCCTACATTGTCAGGCTGTGGGGGCGA  687

seq1  GCCTGCTGTGCATTTCCCTGAGGCAGGTGGGATAACCTTGTGAAGATGAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGTGCATTTCCCTGAGGCAGGTGGGATAACCTTGTGAAGATGAA  737

seq1  GAGCACCGGCCCACTGCTTTTCCTGGTGTAGAATCGCTACCAGGCTTACA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCGGCCCACTGCTTTTCCTGGTGTAGAATCGCTACCAGGCTTACA  787

seq1  GCATGGTGCACAAGGCCTCTGCTCTAGAGTTGCATTTAGTGCTTTTCTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGCACAAGGCCTCTGCTCTAGAGTTGCATTTAGTGCTTTTCTTT  837

seq1  GAGCTCTTCTAGGAAATCTTCATTTTCAAAAATCCAGAGATTTAATGACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTTCTAGGAAATCTTCATTTTCAAAAATCCAGAGATTTAATGACT  887

seq1  TGGAAAGTTTTGAAGTTGGCATGCTATCGTGTCCTTAGCCCTTAAAATAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTTTGAAGTTGGCATGCTATCGTGTCCTTAGCCCTTAAAATAG  937

seq1  TTCTCCTCCCCATCTCTTTAGCGTGTGGCCAGAGAGAACCTGTAGGTTG-  990
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTCCTCCCCATCTCTTTAGCGTGTGGCCAGAGAGAACCTGTAGGTTGT  987

seq1  ---TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA  1037
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA  1037

seq1  TTTATTTTACATTTTTTTCTCTTATGTGGGAAATGCTGTTGAAAGCATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTACATTTTTTTCTCTTATGTGGGAAATGCTGTTGAAAGCATTC  1087

seq1  TGACTTCACAGCACTATCAAGTATTTCTAGCACAGAGTTCAGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCACAGCACTATCAAGTATTTCTAGCACAGAGTTCAGAATTC  1134