BAC Information

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BAC

Clone NameB6Ng01-277K08
Chromosome14 (Build37)
Map Location 3,987,958 - 4,036,476
singlet/doubletdoublet
Overlap geneLOC100040701, LOC100040897
Upstream geneLOC100040452, LOC100040657, LOC100040671, LOC100040682, LOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755, LOC100040767, LOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688
Downstream geneLOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277K08.bB6Ng01-277K08.g
ACCGA078112GA078113
length1,1031,145
definitionB6Ng01-277K08.b B6Ng01-277K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,987,958 - 3,989,066)(4,035,337 - 4,036,476)
sequence
gaattcttacttctattctgagaatccctgggaacaataataaaaccttg
ccttccctcttgtggttgcccctgctatagggtcctctgaagccatcagg
acctgggaggatcttctatccctttgcatcaaaaggctgcaacaagcaag
gctggaattaatgccaggagctgaaatcctatattttgattccccactac
tccattttaggattacttgggcctttttatttgggggctgttcaagattc
cttttggctttcttgagctcagtctcctagctcttcttgatttgctctta
attgtgcataatgcctcttccagttcctaagatattgtggttcaagaaaa
aataactgaggaagttgttgtataccatgggaaaaacttagtgattgtgg
ctgagtcccaattattctctgcaagtcttaggtgctttacaaaagaaaac
atggacttgggttattaaaggaacacaccacaacagcctcaactcaagaa
tttctgctctatgaggcactgtattttttttttctgaaaaatcatcagat
aaatgaaattacagaagcagaatgaatgtctggttaatattttatgttaa
caaatacacaataatgggaaaggaaaacaattttgggaaatgagccaggt
agctctgacatcaaccacctcattaaatagctgtcaagactcaactgctc
atgaattaagcttagtgccctggtagaaacatcctgtgttgaaaaatcct
tagcctaagcacaaggttttgctgactccctttcttttgctttgcattca
ttttctattttcttttctgcgttttctttaccttataatttttttttttt
tgcataccaacttgatctgaaactcattttttacatggagctaatttttt
ctattacatttcccattttttttagtggaatcaatcaaactattgattca
tgttgaggtacaggatgatgggggagcctgttagctaatattaaggtcac
tgtcttccccctggctgtaggagatggaggtaagtatggtggcctgattt
gaggtccgggatccactgcagttactgactcatggaggacatggaatgtg
taa
gaattcccagaggacacaactattatttacaggtgaaaggctttatcaca
cctcctcccacagaagattcctgtgtgacaaccaggaaacaccaggagca
aacttccctggtgatcactttggacctctatggactcacaccaacaggac
ctgcaaactgtgcatcacacaaatcctcagacaccatcaaaggtcccaga
gcctcagtcctgaacaaaacacacacagctaagttcacacacatagacac
aattagaatgccaataaatccagagaggtgccatcactcagaatatgatg
aacaatatcagagtaaaggtgtgatagcctgcaggcattgcattcacaca
ctgagaggcagcaagtgtgagcaggtccttccagctgttgacagcaacaa
tcagattgcaagcaccccaaggtcaagtacaaaagaagttgataataaac
acacagcaccttgtttatccaacaattaaacacctgtcagggcaacttaa
ttgaatgatgggagatgacacactccattcatggaaggaaattgggttaa
cagatggcacaatacaggcaacagggtactgggcataattcctacctgta
gttcaaattctcatacatgtaaacgttcaggattccacacatttcctcca
tgtcattgctgatcttcctcatatccaatttcaattctctaactttattt
atatttgatatctgattagtgatgttggaattttgggttgaagtatttct
agcagaccctgcagatagataaacacaaatgaatttgcatacttgatggc
ccaggagaggggagaccattctgagtcccaagaagaagactgagggagag
aaaaggtaaagacagggtgaattccctaaaagagcagaaaagctatcttc
cagctggtttgctaagctatgtcctctttcctaatcaccactgtcagaca
atatgccacactccctattacaggaccccttgcctggaatctataatttt
gcctcagacataaagatatgggggaacaatttgtcagtcatatcagatgt
gttcaggcaattctgaaaatcatagtgcctagcactatcagcttctaaat
taatcgagtgtctcaactccaagtgtcttgagttctttcaccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_3987958_3989066
seq2: B6Ng01-277K08.b_47_1149

seq1  GAATTCTTACTTCTATTCTGAGAATCCCTGGGAACAATAATAAAACCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTTCTATTCTGAGAATCCCTGGGAACAATAATAAAACCTTG  50

seq1  CCTTCCCTCTTGTGGTTGCCCCTGCTATAGGGTCCTCTGAAGCCATCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTCTTGTGGTTGCCCCTGCTATAGGGTCCTCTGAAGCCATCAGG  100

seq1  ACCTGGGAGGATCTTCTATCCCTTTGCATCAAAAGGCTGCAACAAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGGATCTTCTATCCCTTTGCATCAAAAGGCTGCAACAAGCAAG  150

seq1  GCTGGAATTAATGCCAGGAGCTGAAATCCTATATTTTGATTCCCCACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATTAATGCCAGGAGCTGAAATCCTATATTTTGATTCCCCACTAC  200

seq1  TCCATTTTAGGATTACTTGGGCCTTTTTATTTGGGGGCTGTTCAAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTAGGATTACTTGGGCCTTTTTATTTGGGGGCTGTTCAAGATTC  250

seq1  CTTTTGGCTTTCTTGAGCTCAGTCTCCTAGCTCTTCTTGATTTGCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCTTTCTTGAGCTCAGTCTCCTAGCTCTTCTTGATTTGCTCTTA  300

seq1  ATTGTGCATAATGCCTCTTCCAGTTCCTAAGATATTGTGGTTCAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCATAATGCCTCTTCCAGTTCCTAAGATATTGTGGTTCAAGAAAA  350

seq1  AATAACTGAGGAAGTTGTTGTATACCATGGGAAAAACTTAGTGATTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGAGGAAGTTGTTGTATACCATGGGAAAAACTTAGTGATTGTGG  400

seq1  CTGAGTCCCAATTATTCTCTGCAAGTCTTAGGTGCTTTACAAAAGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCCAATTATTCTCTGCAAGTCTTAGGTGCTTTACAAAAGAAAAC  450

seq1  ATGGACTTGGGTTATTAAAGGAACACACCACAACAGCCTCAACTCAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTGGGTTATTAAAGGAACACACCACAACAGCCTCAACTCAAGAA  500

seq1  TTTCTGCTCTATGAGGCACTGTATTTTTTTTTTCTGAAAAATCATCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTCTATGAGGCACTGTATTTTTTTTTTCTGAAAAATCATCAGAT  550

seq1  AAATGAAATTACAGAAGCAGAATGAATGTCTGGTTAATATTTTATGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATTACAGAAGCAGAATGAATGTCTGGTTAATATTTTATGTTAA  600

seq1  CAAATACACAATAATGGGAAAGGAAAACAATTTTGGGAAATGAGCCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACACAATAATGGGAAAGGAAAACAATTTTGGGAAATGAGCCAGGT  650

seq1  AGCTCTGACATCAACCACCTCATTAAATAGCTGTCAAGACTCAACTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGACATCAACCACCTCATTAAATAGCTGTCAAGACTCAACTGCTC  700

seq1  ATGAATTAAGCTTAGTGCCCTGGTAGAAACATCCTGTGTTGAAAAATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAAGCTTAGTGCCCTGGTAGAAACATCCTGTGTTGAAAAATCCT  750

seq1  TAGCCTAAGCACAAGGTTTTGCTGACTCCCTTTCTTTTGCTTTGCATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAAGCACAAGGTTTTGCTGACTCCCTTTCTTTTGCTTTGCATTCA  800

seq1  TTTTCTATTTTCTTTTCTGCGTTTTCTTTACCTTATAA--TTTTTTTTTT  848
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  TTTTCTATTTTCTTTTCTGCGTTTTCTTTACCTTATAATTTTTTTTTTTT  850

seq1  TGCATACCAACTTGATCTGAAACTCA-TTTTTACATGGAGCTAATTTTTT  897
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCATACCAACTTGATCTGAAACTCATTTTTTACATGGAGCTAATTTTTT  900

seq1  CTATTACATTCCCCA-TTTTTTTAGTGGAATCAATCAAACTATTGATTCA  946
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  CTATTACATTTCCCATTTTTTTTAGTGGAATCAATCAAACTATTGATTCA  950

seq1  TGTTGAGGTACAGGATGAT-GGGGAGCCTGTAAGGCTAATATTTAGGTCA  995
      ||||||||||||||||||| ||||||||||| | ||||||||| ||||||
seq2  TGTTGAGGTACAGGATGATGGGGGAGCCTGTTA-GCTAATATTAAGGTCA  999

seq1  CTGTCTTCCCCCTGGCTGTAGGAGAATGAGTAAAGTATGGTGG-CTGAAT  1044
      |||||||||||||||||||||||||  |||  ||||||||||| ||||  
seq2  CTGTCTTCCCCCTGGCTGTAGGAGATGGAGGTAAGTATGGTGGCCTGA--  1047

seq1  TTTAAGGTTCCCGGAATCCACTGCAGTTAACCTTGACATCCATGGAGGGA  1094
      ||| ||||  |||| ||||||||||||||    ||||   |||||| |||
seq2  TTTGAGGT--CCGGGATCCACTGCAGTTA---CTGAC--TCATGGA-GGA  1089

seq1  CATTGAGATGTGTAA  1109
      ||| || ||||||||
seq2  CATGGA-ATGTGTAA  1103

seq1: chr14_4035337_4036476
seq2: B6Ng01-277K08.g_65_1209 (reverse)

seq1  TGTGGTG--AGGACTC-AGACACTTTGGATTTGAAGACACTCGATTAA-T  46
      |||||||  || |||| |||||| ||||| ||| |||||||||||||| |
seq2  TGTGGTGAAAGAACTCAAGACAC-TTGGAGTTG-AGACACTCGATTAATT  48

seq1  TAGAGCTTGATAGTGCTAAGCACTATGAATTTCAGGATTTCCCTGAAACA  96
      ||||   ||||||||||| ||||||||| ||||| || || |||| ||||
seq2  TAGAAGCTGATAGTGCTAGGCACTATGATTTTCA-GAATTGCCTG-AACA  96

seq1  CATCTGATATGACCTGACAA--TGTT-CCCCATATCTTTATGTCTGAGGC  143
      |||||||||||| |||||||  |||| |||||||||||||||||||||||
seq2  CATCTGATATGA-CTGACAAATTGTTCCCCCATATCTTTATGTCTGAGGC  145

seq1  -AAATTATAGATTTCAGGGCAAGGGGTCCTGTAATAGGGAGTGTGGCATA  192
       |||||||||||| || |||||||||||||||||||||||||||||||||
seq2  AAAATTATAGATTCCA-GGCAAGGGGTCCTGTAATAGGGAGTGTGGCATA  194

seq1  -TGTCTGACAGTGGTGATTAGG-AAGAGGACATAGCTTAGCAAACCAGCT  240
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGTCTGACAGTGGTGATTAGGAAAGAGGACATAGCTTAGCAAACCAGCT  244

seq1  GGAAGATAGCTTTTCTGCTCTTTTAGGG-ATTCACCCTGTCTTTACCTTT  289
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAAGATAGCTTTTCTGCTCTTTTAGGGAATTCACCCTGTCTTTACCTTT  294

seq1  TCTCTCCCTCAGTCTTCTTCTTGGGACTCAGAATGGTCTCCCCTCTCCTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTCAGTCTTCTTCTTGGGACTCAGAATGGTCTCCCCTCTCCTG  344

seq1  GGCCATCAAGTATGCAAATTCATTTGTGTTTATCTATCTGCAGGGTCTGC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCAAGTATGCAAATTCATTTGTGTTTATCTATCTGCAGGGTCTGC  394

seq1  TAGAAATACTTCAACCCAAAATTCCAACATCACTAATCAGATATCAAATA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATACTTCAACCCAAAATTCCAACATCACTAATCAGATATCAAATA  444

seq1  TAAATAAAGTTAGAGAATTGAAATTGGATATGAGGAAGATCAGCAATGAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGTTAGAGAATTGAAATTGGATATGAGGAAGATCAGCAATGAC  494

seq1  ATGGAGGAAATGTGTGGAATCCTGAACGTTTACATGTATGAGAATTTGAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAAATGTGTGGAATCCTGAACGTTTACATGTATGAGAATTTGAA  544

seq1  CTACAGGTAGGAATTATGCCCAGTACCCTGTTGCCTGTATTGTGCCATCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGTAGGAATTATGCCCAGTACCCTGTTGCCTGTATTGTGCCATCT  594

seq1  GTTAACCCAATTTCCTTCCATGAATGGAGTGTGTCATCTCCCATCATTCA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCCAATTTCCTTCCATGAATGGAGTGTGTCATCTCCCATCATTCA  644

seq1  ATTAAGTTGCCCTGACAGGTGTTTAATTGTTGGATAAACAAGGTGCTGTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTGCCCTGACAGGTGTTTAATTGTTGGATAAACAAGGTGCTGTG  694

seq1  TGTTTATTATCAACTTCTTTTGTACTTGACCTTGGGGTGCTTGCAATCTG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTATCAACTTCTTTTGTACTTGACCTTGGGGTGCTTGCAATCTG  744

seq1  ATTGTTGCTGTCAACAGCTGGAAGGACCTGCTCACACTTGCTGCCTCTCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGCTGTCAACAGCTGGAAGGACCTGCTCACACTTGCTGCCTCTCA  794

seq1  GTGTGTGAATGCAATGCCTGCAGGCTATCACACCTTTACTCTGATATTGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAATGCAATGCCTGCAGGCTATCACACCTTTACTCTGATATTGT  844

seq1  TCATCATATTCTGAGTGATGGCACCTCTCTGGATTTATTGGCATTCTAAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATATTCTGAGTGATGGCACCTCTCTGGATTTATTGGCATTCTAAT  894

seq1  TGTGTCTATGTGTGTGAACTTAGCTGTGTGTGTTTTGTTCAGGACTGAGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTATGTGTGTGAACTTAGCTGTGTGTGTTTTGTTCAGGACTGAGG  944

seq1  CTCTGGGACCTTTGATGGTGTCTGAGGATTTGTGTGATGCACAGTTTGCA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGACCTTTGATGGTGTCTGAGGATTTGTGTGATGCACAGTTTGCA  994

seq1  GGTCCTGTTGGTGTGAGTCCATAGAGGTCCAAAGTGATCACCAGGGAAGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGTTGGTGTGAGTCCATAGAGGTCCAAAGTGATCACCAGGGAAGT  1044

seq1  TTGCTCCTGGTGTTTCCTGGTTGTCACACAGGAATCTTCTGTGGGAGGAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTGGTGTTTCCTGGTTGTCACACAGGAATCTTCTGTGGGAGGAG  1094

seq1  GTGTGATAAAGCCTTTCACCTGTAAATAATAGTTGTGTCCTCTGGGAATT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATAAAGCCTTTCACCTGTAAATAATAGTTGTGTCCTCTGGGAATT  1144

seq1  C  1140
      |
seq2  C  1145