BAC Information

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BAC

Clone NameB6Ng01-278A21
Chromosome14 (Build37)
Map Location 82,463,507 - 82,603,646
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278A21.bB6Ng01-278A21.g
ACCGA078405GA078406
length1,1651,140
definitionB6Ng01-278A21.b B6Ng01-278A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,602,444 - 82,603,646)(82,463,507 - 82,464,662)
sequence
gaattcaagcctaaaacgagtaacatcaaaaatgatggaaaagaatttca
tctaattcatcatctgcagggtaatcaataacccaaagcactgagagaga
ccagttgctaagaaactgtgtgagagcatggcagagtctgcatgactcct
aataaaaaggaatttaaagtgaatgggagttagtagctgagtgtgtaaac
agaagtagtgactaacctgggagggcacttaaaggaaagagaaacaaatc
aatggaaagttagcttaacaatcaaagaataaccataggaaagggagttt
aaaggctttcaagtagtctgtgtccttgacattcatcaaaaccaccagga
ttcaacaaaggaaggaacaaacagaaatcagagaaatagagacaaaggga
tgctctaaaatgaataattcctgaagaagagtgtgcaaaatattatctca
tctataagaaatttgatttagtggataggaaaagcaaagtagaagcaatc
ccacttccccctagagttaaaaataatagaaatgaatacacacatacaca
cacacacacatacacacacacactcaagggaagggtagtattgagtttag
caatgggtctttctttcacaggtgtctgtaacttcttttcctgaactttt
cacaagtgtggctgccttcctcaagaacacacatctatatacactctgta
gttcagaaggacttgtgtttatggtttagcactgtcagttttgtttaaaa
aataaaataaaataaatatctaataactagcagtacattcagattcaaac
atttaaaagtattaatggaaattgacataatttgcattttgttttccctc
cacttatataataaataagtattattattaaaaatatgttaccaaaaaag
aaagattaaaaaaatctacgtatatgtaactctatgaggtccttttagat
tttatggtctctgtctcctggtcatacatcctttgtttgctcatttagag
aaatccccaacatttctagctagtcacatttcattttggttttcacatct
catactttatctatgttagcaagaaccctcttaggatctgaagaaattca
cattcttttgcagtaacatgccgtactgatagtaagttggaatccaatca
cttcagtcgttccga

gaattctctgagtttgtattgaaattagctttgtaaagcaactctgctga
ttagttcttaagacatgaaaatattttaaattaagtttatataatataat
cttccttttgattcttttgctttctctgtgccctttttgaacttaaacaa
tacaaaaaagtaaatttctatctttttgtttgtttgtttgtttgtttgtt
aaaattagatcctgtttgaacaggatttgtgtgtttctggtaattgtttt
catgtacctattaaagtattattggattttattttgctaattgtaagcct
gtgtttgtgatttaatatttaagattgctgcattaatacaagaaactatt
gccatactttttcagaaataagaaaatggtttgaaacataaagtttacat
aaaacataaaattgctacaagtttcagaatctaacccaataagtaggata
tcttaatatgctccattgtgttataaatggaatcacatttctttcatgtt
tttaatttgttttattgtagaaataatatatttttgttaaaacattgaca
taaacatattaaaataaacatatattcatatcagtttacaaatatatata
tattatttgttttcagagcatggtgagaatatttacttgctaatatttgg
gatttttctattagcattcttcaaacatataaatcaatcttccttctgtg
ttctctcattattactaaactatacattaagagagagagaaatatattaa
atgatcatatttgttagataaagattatgagctgtttttaacaataaaat
ttcacaccaaaaaaagattaagtggtcacaaaattgaaattatttaatta
ttagaatccttttattttattgtacaacagaagctttagaatacttctgg
ctctagctgtctcaagagcattagatcacaacaattacatgatctaactt
aaaagcacataatgggggaggggaaagcaaggagtttcatcaatgtgtca
taatttagggaacagagaagaagatcatcttcaagctattgccatgactt
aagtatagtggaaagtgataaaatccgaactgaataaaatatcatgccta
tataacatgtggtgttcagaaaaccacctaattcttgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_82602444_82603646
seq2: B6Ng01-278A21.b_50_1214 (reverse)

seq1  TCGGAACGGAACTGAAGTCCATTGGATCCAAAACTTAACTTAAT-TCAGT  49
      ||||||||  ||||||||  ||||||| |       |||||| | |||||
seq2  TCGGAACG--ACTGAAGT-GATTGGATTC------CAACTTACTATCAGT  41

seq1  AAACGGCAATGTTACTGGGCAAAAAGGAAATGTGGATATTCTTTCCAGAT  99
        ||||| ||||||||  ||||||    |||||| || |||||  |||||
seq2  --ACGGC-ATGTTACT--GCAAAA---GAATGTGAAT-TTCTT--CAGAT  80

seq1  TCCCCTAAGAGGGTTCTTGCTAACATAGGATAAAGTAATGAGATGGTGAA  149
         |||||||||||||||||||||||| |||||||| ||||||| |||||
seq2  ---CCTAAGAGGGTTCTTGCTAACATA-GATAAAGT-ATGAGAT-GTGAA  124

seq1  AACCAAAAATGGAAAATGTGACTAGCTAAGAAATGTTGGGGATTTTCTCT  199
      |||| ||||||  |||||||||||||| |||||||||||||| |||||||
seq2  AACC-AAAATG--AAATGTGACTAGCT-AGAAATGTTGGGGA-TTTCTCT  169

seq1  AAAATGAGCAAACAAAGGATTGTTATGAACCAGGAGACAGAGACCATAAA  249
       |||||||||||||||||||   |||| ||||||||||||||||||||||
seq2  -AAATGAGCAAACAAAGGAT--GTATG-ACCAGGAGACAGAGACCATAAA  215

seq1  ATCTAAAAGGAACCTTCATAGAGTTACATATACGTAGATTTTTTTAATCT  299
      |||||||||||  | |||||||||||||||||||||||||||||||||| 
seq2  ATCTAAAAGGA--CCTCATAGAGTTACATATACGTAGATTTTTTTAATC-  262

seq1  TTTCTTTTTTGGTAAACATATTTTTAATAATAATACTTATTTATTATATA  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTGGT-AACATATTTTTAATAATAATACTTATTTATTATATA  311

seq1  AGTGGAGGGAAAACAAAATGCAAATTATGTCAATTTCCATTAATACTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGGAAAACAAAATGCAAATTATGTCAATTTCCATTAATACTTTT  361

seq1  AAATGTTTGAATCTGAATGTACTGCTAGTTATTAGATATTTATTTTATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGAATCTGAATGTACTGCTAGTTATTAGATATTTATTTTATTT  411

seq1  TATTTTTTAAACAAAACTGACAGTGCTAAACCATAAACACAAGTCCTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAAACAAAACTGACAGTGCTAAACCATAAACACAAGTCCTTCT  461

seq1  GAACTACAGAGTGTATATAGATGTGTGTTCTTGAGGAAGGCAGCCACACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACAGAGTGTATATAGATGTGTGTTCTTGAGGAAGGCAGCCACACT  511

seq1  TGTGAAAAGTTCAGGAAAAGAAGTTACAGACACCTGTGAAAGAAAGACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGTTCAGGAAAAGAAGTTACAGACACCTGTGAAAGAAAGACCC  561

seq1  ATTGCTAAACTCAATACTACCCTTCCCTTGAGTGTGTGTGTGTATGTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAAACTCAATACTACCCTTCCCTTGAGTGTGTGTGTGTATGTGTG  611

seq1  TGTGTGTGTATGTGTGTATTCATTTCTATTATTTTTAACTCTAGGGGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGTGTGTATTCATTTCTATTATTTTTAACTCTAGGGGGAA  661

seq1  GTGGGATTGCTTCTACTTTGCTTTTCCTATCCACTAAATCAAATTTCTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTGCTTCTACTTTGCTTTTCCTATCCACTAAATCAAATTTCTTA  711

seq1  TAGATGAGATAATATTTTGCACACTCTTCTTCAGGAATTATTCATTTTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAGATAATATTTTGCACACTCTTCTTCAGGAATTATTCATTTTAG  761

seq1  AGCATCCCTTTGTCTCTATTTCTCTGATTTCTGTTTGTTCCTTCCTTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCTTTGTCTCTATTTCTCTGATTTCTGTTTGTTCCTTCCTTTGT  811

seq1  TGAATCCTGGTGGTTTTGATGAATGTCAAGGACACAGACTACTTGAAAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTGGTGGTTTTGATGAATGTCAAGGACACAGACTACTTGAAAGC  861

seq1  CTTTAAACTCCCTTTCCTATGGTTATTCTTTGATTGTTAAGCTAACTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACTCCCTTTCCTATGGTTATTCTTTGATTGTTAAGCTAACTTTC  911

seq1  CATTGATTTGTTTCTCTTTCCTTTAAGTGCCCTCCCAGGTTAGTCACTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTTGTTTCTCTTTCCTTTAAGTGCCCTCCCAGGTTAGTCACTAC  961

seq1  TTCTGTTTACACACTCAGCTACTAACTCCCATTCACTTTAAATTCCTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTACACACTCAGCTACTAACTCCCATTCACTTTAAATTCCTTTT  1011

seq1  TATTAGGAGTCATGCAGACTCTGCCATGCTCTCACACAGTTTCTTAGCAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGAGTCATGCAGACTCTGCCATGCTCTCACACAGTTTCTTAGCAA  1061

seq1  CTGGTCTCTCTCAGTGCTTTGGGTTATTGATTACCCTGCAGATGATGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTCTCTCAGTGCTTTGGGTTATTGATTACCCTGCAGATGATGAAT  1111

seq1  TAGATGAAATTCTTTTCCATCATTTTTGATGTTACTCGTTTTAGGCTTGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAAATTCTTTTCCATCATTTTTGATGTTACTCGTTTTAGGCTTGA  1161

seq1  ATTC  1203
      ||||
seq2  ATTC  1165


seq1: chr14_82463507_82464662
seq2: B6Ng01-278A21.g_68_1207

seq1  GAATTCTCTGAGTTTGTATTGAAATTAGCTTTGTAAAGCAACTCTGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGTTTGTATTGAAATTAGCTTTGTAAAGCAACTCTGCTGA  50

seq1  TTAGTTCTTAAGACATGAAAATATTTTAAATTAAGTTTATATAATATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTTAAGACATGAAAATATTTTAAATTAAGTTTATATAATATAAT  100

seq1  CTTCCTTTTGATTCTTTTGCTTTCTCTGTGCCCTTTTTGAACTTAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTGATTCTTTTGCTTTCTCTGTGCCCTTTTTGAACTTAAACAA  150

seq1  TACAAAAAAGTAAATTTCTATCTTTTTGTTTGTTTGTTTGTTTGTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAAGTAAATTTCTATCTTTTTGTTTGTTTGTTTGTTTGTTTGTT  200

seq1  AAAATTAGATCCTGTTTGAACAGGATTTGTGTGTTTCTGGTAATTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGATCCTGTTTGAACAGGATTTGTGTGTTTCTGGTAATTGTTTT  250

seq1  CATGTACCTATTAAAGTATTATTGGATTTTATTTTGCTAATTGTAAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCTATTAAAGTATTATTGGATTTTATTTTGCTAATTGTAAGCCT  300

seq1  GTGTTTGTGATTTAATATTTAAGATTGCTGCATTAATACAAGAAACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGATTTAATATTTAAGATTGCTGCATTAATACAAGAAACTATT  350

seq1  GCCATACTTTTTCAGAAATAAGAAAATGGTTTGAAACATAAAGTTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACTTTTTCAGAAATAAGAAAATGGTTTGAAACATAAAGTTTACAT  400

seq1  AAAACATAAAATTGCTACAAGTTTCAGAATCTAACCCAATAAGTAGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAAAATTGCTACAAGTTTCAGAATCTAACCCAATAAGTAGGATA  450

seq1  TCTTAATATGCTCCATTGTGTTATAAATGGAATCACATTTCTTTCATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATATGCTCCATTGTGTTATAAATGGAATCACATTTCTTTCATGTT  500

seq1  TTTAATTTGTTTTATTGTAGAAATAATATATTTTTGTTAAAACATTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTGTTTTATTGTAGAAATAATATATTTTTGTTAAAACATTGACA  550

seq1  TAAACATATTAAAATAAACATATATTCATATCAGTTTACAAATATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATATTAAAATAAACATATATTCATATCAGTTTACAAATATATATA  600

seq1  TATTATTTGTTTTCAGAGCATGGTGAGAATATTTACTTGCTAATATTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTGTTTTCAGAGCATGGTGAGAATATTTACTTGCTAATATTTGG  650

seq1  GATTTTTCTATTAGCATTCTTCAAACATATAAATCAATCTTCCTTCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCTATTAGCATTCTTCAAACATATAAATCAATCTTCCTTCTGTG  700

seq1  TTCTCTCATTATTACTAAACTATACATTAAGAGAGAGAGAAATATATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCATTATTACTAAACTATACATTAAGAGAGAGAGAAATATATTAA  750

seq1  ATGATCATATTTGTTAGATAAAGATTATGAGCTGTTTTTAACAATAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATATTTGTTAGATAAAGATTATGAGCTGTTTTTAACAATAAAAT  800

seq1  TTCACACCAAAAAAAGATTAAGTGGTCACAAAATTGAAATTATTTAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCAAAAAAAGATTAAGTGGTCACAAAATTGAAATTATTTAATTA  850

seq1  TTAGAATCCCTTTTATTTATTGTACAACAGAAGCTTTAGAATACTTCTGG  900
      ||||||||| |||  |||||||||||||||||||||||||||||||||||
seq2  TTAGAATCCTTTTATTTTATTGTACAACAGAAGCTTTAGAATACTTCTGG  900

seq1  CTCTAGCTGTCTCAAGAGCATTAGATCAACAACAATTACAATGATCTAAC  950
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  CTCTAGCTGTCTCAAGAGCATTAGATC-ACAACAATTAC-ATGATCTAAC  948

seq1  TTTAAAAGCACATAAT-GGGGAGGGGAAAGCAAGGAGTTTTCATCAATGT  999
       ||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  -TTAAAAGCACATAATGGGGGAGGGGAAAGCAAGGAG-TTTCATCAATGT  996

seq1  GGTCATAATTTAGGGAACAGAGAGAAGGATCATCTTCAAGCTATTGGCAT  1049
       ||||||||||||||||||||||  | ||||||||||||||||||| |||
seq2  -GTCATAATTTAGGGAACAGAGAAGAAGATCATCTTCAAGCTATTGCCAT  1045

seq1  GACCTTTAAGTATAGTTGGAAGTGATAAATTCAGAAACTGGAATAAAAAT  1099
      |||  ||||||||||| | |||||||||| || | |||| |||| |||||
seq2  GAC--TTAAGTATAGTGGAAAGTGATAAAATCCG-AACT-GAAT-AAAAT  1090

seq1  ATTCAATGGTCTTATAAAACATGTGGTGTTAAAGAAAAACACCTTTATTT  1149
      ||   |||  | |||| |||||||||||||  |||||| ||||  || ||
seq2  AT--CATG--CCTATATAACATGTGGTGTT-CAGAAAACCACC--TAATT  1133

seq1  CTTGTTA  1156
      |||||||
seq2  CTTGTTA  1140


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