BAC Information

Click to search

BAC

Clone NameB6Ng01-278D22
Chromosome14 (Build37)
Map Location 36,108,264 - 36,220,889
singlet/doubletdoublet
Overlap geneGrid1
Upstream gene3110001K24Rik, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278D22.bB6Ng01-278D22.g
ACCGA078541GA078542
length1,1381,147
definitionB6Ng01-278D22.b B6Ng01-278D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,108,264 - 36,109,378)(36,219,713 - 36,220,889)
sequence
gaattcacagtactcctggaggtgaatcacagctctgcactatatcatgc
agggtctaaaagtccttgtgtatttcagatttgaactaattgaactttgc
ttgtgcaactcttgggatttcttttctgggctcatttctgtattgctctg
ctgggagtagagagtgtcaggaaaggtctcctctctgcctataactgtgg
aatcctattacttgaagggcttcctattcagactctgtcctgaggtgttg
gactttggagactctagatttgtcctgccttccaaatgccaggtgaaatt
atttttagcttgtccctgaagttattttagtgcttttaaaacttgggtct
agatctgcagaagtttacatttcagatgcaacttagagcatacctcagca
ataatatcacatccacaaaagtgaagacacagttagcaattgctacagtc
ctgtttggagttgctgtgaacattttaagatattctgaatccatttggaa
tgaagggaaagtacacaaataagaagttaaatggagttgggagaatttag
aaaacttaagcttagtggaaatggaatgttcacagaaggtcaagtcagaa
gaggggaaaggagaaaatatcagagagaatggagacagtgagacaatagg
aaagaagagagtaaaataggagacaggaaataagagagctgaccaggata
ctcacaagcttctctcaaatcccaccctttctggtcagaggatggctacc
taattacccagtgaatgctgaggatgttggagggtaaatgttcacctttg
agttcacaatcacatataaagggacatgcaagatagtaaattttagaaaa
ttagaatattaagagctactcaatattcagagatcacagagaccctcttt
tgggactttttcttaccagtcttttagtacaccaacagatcttggagaag
ggttcagagacattaacagggaacctagggtccactggtcctggtcttgg
cccacatccagaattgttgcttctgtagggattgattctgaagccagtat
tgcagaatgacctgttctgggtccagccatatgcgtatgtgctgtgaatg
aagagagctagggttgggcaagggggccataagtctgt
gaattcttatgaggattaaataagctgacatttataaaatactggtgatc
atgccaaacacatgataaacatggcagagttgctattctatagcccattc
agagccaactccaacagtggctgagtatcggccatggatcaagctacttc
ccaagactgtcttccactttcactcatggacaccagtcaaggacctgagt
gcttgtccttagaggtctctgcatgacagcatggtgataggcctcaggca
ctctgctcactgtgggatttcctagcagcatactgggccctggatacgga
gcttaactgctcaagaaaaggcctgaatcccacctttaccgcctctctca
cgtccacattactggaacacatccagtcatgttcttttttctcaatgaac
aaccaacctcctccgggaaaacctccccctgacttcctttcttaagaact
tctcagaaacaaccctttctaaccagaacgaagtgcccttctgggtgata
aaaggagatttgcagggtgatagaaaaataacatttttttttacccaatc
cataattaggtcttagagaaacaaattaaatgaaggcaaaattgtttctt
taaagcatgaatactgatctgcgtaatgatgtacatttaatggttttaat
ttccaagggaaactatttttaaaatgtgtttggaaaatgtatttcttcct
tcaattttgtgtctataaagttaaaccccgggcctggtataggagcactc
tcacttgcaatcttacatacttagtgatgacattttaaacctcatagagc
aaaaggaatttctgcctccgagggtaccctgctatgccaggtaaaggcat
taatataagagtccccaaagcacaactgctccatcccactaactttcaag
tcctcttgactagccttcttagttgagcccttaggatataccctttattg
attattattataaatatataaaacagcatcctaacatcattttagtatat
ctatttacatctttgaaggtggcaattgttatcttaaaacttgagcaagt
gttcaattatcccacgatgaaatcatgaagactccatgtttttaacttac
atatgcaaaggttacctggtagcattgtcatgctcatgaactatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_36108264_36109378
seq2: B6Ng01-278D22.b_44_1181

seq1  GAATTCACAGTACTCCTGGAGGTGAATCACAGCTCTGCACTATATCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTACTCCTGGAGGTGAATCACAGCTCTGCACTATATCATGC  50

seq1  AGGGTCTAAAAGTCCTTGTGTATTTCAGATTTGAACTAATTGAACTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTAAAAGTCCTTGTGTATTTCAGATTTGAACTAATTGAACTTTGC  100

seq1  TTGTGCAACTCTTGGGATTTCTTTTCTGGGCTCATTTCTGTATTGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAACTCTTGGGATTTCTTTTCTGGGCTCATTTCTGTATTGCTCTG  150

seq1  CTGGGAGTAGAGAGTGTCAGGAAAGGTCTCCTCTCTGCCTATAACTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTAGAGAGTGTCAGGAAAGGTCTCCTCTCTGCCTATAACTGTGG  200

seq1  AATCCTATTACTTGAAGGGCTTCCTATTCAGACTCTGTCCTGAGGTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTATTACTTGAAGGGCTTCCTATTCAGACTCTGTCCTGAGGTGTTG  250

seq1  GACTTTGGAGACTCTAGATTTGTCCTGCCTTCCAAATGCCAGGTGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGAGACTCTAGATTTGTCCTGCCTTCCAAATGCCAGGTGAAATT  300

seq1  ATTTTTAGCTTGTCCCTGAAGTTATTTTAGTGCTTTTAAAACTTGGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGCTTGTCCCTGAAGTTATTTTAGTGCTTTTAAAACTTGGGTCT  350

seq1  AGATCTGCAGAAGTTTACATTTCAGATGCAACTTAGAGCATACCTCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCAGAAGTTTACATTTCAGATGCAACTTAGAGCATACCTCAGCA  400

seq1  ATAATATCACATCCACAAAAGTGAAGACACAGTTAGCAATTGCTACAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCACATCCACAAAAGTGAAGACACAGTTAGCAATTGCTACAGTC  450

seq1  CTGTTTGGAGTTGCTGTGAACATTTTAAGATATTCTGAATCCATTTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGAGTTGCTGTGAACATTTTAAGATATTCTGAATCCATTTGGAA  500

seq1  TGAAGGGAAAGTACACAAATAAGAAGTTAAATGGAGTTGGGAGAATTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAAAGTACACAAATAAGAAGTTAAATGGAGTTGGGAGAATTTAG  550

seq1  AAAACTTAAGCTTAGTGGAAATGGAATGTTCACAGAAGGTCAAGTCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAAGCTTAGTGGAAATGGAATGTTCACAGAAGGTCAAGTCAGAA  600

seq1  GAGGGGAAAGGAGAAAATATCAGAGAGAATGGAGACAGTGAGACAATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAAGGAGAAAATATCAGAGAGAATGGAGACAGTGAGACAATAGG  650

seq1  AAAGAAGAGAGTAAAATAGGAGACAGGAAATAAGAGAGCTGACCAGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGAGTAAAATAGGAGACAGGAAATAAGAGAGCTGACCAGGATA  700

seq1  CTCACAAGCTTCTCTCAAAT-CCACCC-TTCTGGTCAGAGGATGGCTACC  748
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  CTCACAAGCTTCTCTCAAATCCCACCCTTTCTGGTCAGAGGATGGCTACC  750

seq1  TAATTACCCAGTGAATGCTGAGGATGTTGGAGGGTAAATGTTCACC-TTG  797
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAATTACCCAGTGAATGCTGAGGATGTTGGAGGGTAAATGTTCACCTTTG  800

seq1  AGTTCACAATCACATAT-AAGGGACATGCAAGATAGTAAATTTAAG-AAA  845
      ||||||||||||||||| ||||||||||||||||||||||||| || |||
seq2  AGTTCACAATCACATATAAAGGGACATGCAAGATAGTAAATTTTAGAAAA  850

seq1  GTAGAATA-TAAGAGCTACTCAATATTCAGAGATCACAGAGACCCTCTTT  894
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATATTAAGAGCTACTCAATATTCAGAGATCACAGAGACCCTCTTT  900

seq1  --GGAC-TTTTCTTACCAGTCTTTTAGTACACCAACAGATCTTGGAG-AG  940
        |||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGGACTTTTTCTTACCAGTCTTTTAGTACACCAACAGATCTTGGAGAAG  950

seq1  GGTTCAGAGACATAAACAGGGAACCTAGGGTCCACT-GTCCTGGTTCTTG  989
      ||||||||||||| |||||||||||||||||||||| ||||||| |||||
seq2  GGTTCAGAGACATTAACAGGGAACCTAGGGTCCACTGGTCCTGG-TCTTG  999

seq1  G-CCACATCCAGA--TGTTGC-TCTGTAGGGAATGA-TCTGAGCCAAGTA  1034
      | |||||||||||  |||||| |||||||||| ||| |||||  | ||||
seq2  GCCCACATCCAGAATTGTTGCTTCTGTAGGGATTGATTCTGAAGCCAGTA  1049

seq1  ATGCAAGATGA-CTG-TCT-GGTCCAGCC-TATGCGTATGTGCTGTG-AT  1079
       ||||  |||| ||| ||| ||||||||| ||||||||||||||||| ||
seq2  TTGCAGAATGACCTGTTCTGGGTCCAGCCATATGCGTATGTGCTGTGAAT  1099

seq1  GGAG-GAGGTAGGGTT-GGCATGGGGG-CATAAGTCTGT  1115
      | || ||| ||||||| |||| ||||| |||||||||||
seq2  GAAGAGAGCTAGGGTTGGGCAAGGGGGCCATAAGTCTGT  1138

seq1: chr14_36219713_36220889
seq2: B6Ng01-278D22.g_65_1211 (reverse)

seq1  AACATAGTAACATTTAAATTCATTGAGCATGACAAAATACCTACCCAGGT  50
              |||||   | |||| ||||||||||||     ||| ||||||
seq2  --------AACAT---AGTTCA-TGAGCATGACAA---TGCTA-CCAGGT  34

seq1  AACTTTGCCATTTATGTAGGTAAAAAACCATGGAGTTCTTTCCATGGATT  100
      ||| ||  ||  |||||| || ||||| ||||||| ||||  ||| ||||
seq2  AACCTTTGCA--TATGTAAGTTAAAAA-CATGGAG-TCTT--CAT-GATT  77

seq1  TCATTTGTGGATAATTGAACACTTTGGCTCCAAGTTTT-AGATAACAA-T  148
      ||||    ||||||||||||||||  ||| |||||||| ||||||||| |
seq2  TCATCGTGGGATAATTGAACACTT--GCT-CAAGTTTTAAGATAACAATT  124

seq1  GCCACCTTCAAAAGATGTAAAATAGAATATACTAAAAATGATGTTAGGAT  198
      ||||||||| |||||||| |||||| ||||||| ||||||||||||||||
seq2  GCCACCTTC-AAAGATGT-AAATAG-ATATACT-AAAATGATGTTAGGAT  170

seq1  GCTGTTTTATATATTTATAATAAT-ATCAATTAAAGGGTATTATTCCTAA  247
      |||||||||||||||||||||||| ||||| ||||||||||   ||||||
seq2  GCTGTTTTATATATTTATAATAATAATCAA-TAAAGGGTAT--ATCCTAA  217

seq1  GGGCTCAACTAAGAAGGCTTAGTCAAGAGGACTTGAAAGTTAGTGGGATG  297
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGCTCAACTAAGAAGGC-TAGTCAAGAGGACTTGAAAGTTAGTGGGATG  266

seq1  GAGCAG-TGTGCTTTGGGGACTCCTTATATTAATGCC-TTACCTGGCATA  345
      |||||| ||||||||||||||| |||||||||||||| ||||||||||||
seq2  GAGCAGTTGTGCTTTGGGGACT-CTTATATTAATGCCTTTACCTGGCATA  315

seq1  GCAGGGTACCCTCGGAGGCAGAAATTCCTTTTGCTCTATGAGGTTTAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTACCCTCGGAGGCAGAAATTCCTTTTGCTCTATGAGGTTTAAAA  365

seq1  TGTCATCACTAAGTATGTAAGATTGCAAGTGAGAGTGCTCCTATACCAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCACTAAGTATGTAAGATTGCAAGTGAGAGTGCTCCTATACCAGG  415

seq1  CCCGGGGTTTAACTTTATAGACACAAAATTGAAGGAAGAAATACATTTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGTTTAACTTTATAGACACAAAATTGAAGGAAGAAATACATTTTC  465

seq1  CAAACACATTTTAAAAATAGTTTCCCTTGGAAATTAAAACCATTAAATGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACATTTTAAAAATAGTTTCCCTTGGAAATTAAAACCATTAAATGT  515

seq1  ACATCATTACGCAGATCAGTATTCATGCTTTAAAGAAACAATTTTGCCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTACGCAGATCAGTATTCATGCTTTAAAGAAACAATTTTGCCTT  565

seq1  CATTTAATTTGTTTCTCTAAGACCTAATTATGGATTGGGTAAAAAAAAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATTTGTTTCTCTAAGACCTAATTATGGATTGGGTAAAAAAAAAT  615

seq1  GTTATTTTTCTATCACCCTGCAAATCTCCTTTTATCACCCAGAAGGGCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTCTATCACCCTGCAAATCTCCTTTTATCACCCAGAAGGGCAC  665

seq1  TTCGTTCTGGTTAGAAAGGGTTGTTTCTGAGAAGTTCTTAAGAAAGGAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTCTGGTTAGAAAGGGTTGTTTCTGAGAAGTTCTTAAGAAAGGAAG  715

seq1  TCAGGGGGAGGTTTTCCCGGAGGAGGTTGGTTGTTCATTGAGAAAAAAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGGAGGTTTTCCCGGAGGAGGTTGGTTGTTCATTGAGAAAAAAGA  765

seq1  ACATGACTGGATGTGTTCCAGTAATGTGGACGTGAGAGAGGCGGTAAAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACTGGATGTGTTCCAGTAATGTGGACGTGAGAGAGGCGGTAAAGG  815

seq1  TGGGATTCAGGCCTTTTCTTGAGCAGTTAAGCTCCGTATCCAGGGCCCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCAGGCCTTTTCTTGAGCAGTTAAGCTCCGTATCCAGGGCCCAG  865

seq1  TATGCTGCTAGGAAATCCCACAGTGAGCAGAGTGCCTGAGGCCTATCACC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGCTAGGAAATCCCACAGTGAGCAGAGTGCCTGAGGCCTATCACC  915

seq1  ATGCTGTCATGCAGAGACCTCTAAGGACAAGCACTCAGGTCCTTGACTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCATGCAGAGACCTCTAAGGACAAGCACTCAGGTCCTTGACTGG  965

seq1  TGTCCATGAGTGAAAGTGGAAGACAGTCTTGGGAAGTAGCTTGATCCATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGAGTGAAAGTGGAAGACAGTCTTGGGAAGTAGCTTGATCCATG  1015

seq1  GCCGATACTCAGCCACTGTTGGAGTTGGCTCTGAATGGGCTATAGAATAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATACTCAGCCACTGTTGGAGTTGGCTCTGAATGGGCTATAGAATAG  1065

seq1  CAACTCTGCCATGTTTATCATGTGTTTGGCATGATCACCAGTATTTTATA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGCCATGTTTATCATGTGTTTGGCATGATCACCAGTATTTTATA  1115

seq1  AATGTCAGCTTATTTAATCCTCATAAGAATTC  1177
      ||||||||||||||||||||||||||||||||
seq2  AATGTCAGCTTATTTAATCCTCATAAGAATTC  1147