BAC Information

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BAC

Clone NameB6Ng01-279A03
Chromosome14 (Build37)
Map Location 73,288,401 - 73,426,265
singlet/doubletdoublet
Overlap geneLOC100043723, LOC668487, LOC668489
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721
Downstream geneCysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279A03.bB6Ng01-279A03.g
ACCGA079101GA079102
length1,0771,089
definitionB6Ng01-279A03.b B6Ng01-279A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,425,172 - 73,426,265)(73,288,401 - 73,289,421)
sequence
gaattctaaacaccagggcttaactcctagtctaaatacttagtatggca
attatcaaaaatctgtacactgtgtttatctgcatcctttaggaagttgg
gggtggctcttaagtagcactgtcaagaacagtttctttccatcagtatt
gctaaaagttatttcaagtcctctactctccactagtttaagacaagcat
gctggagcaggtcacatccagtttgatctggagtggaggggtgccatggt
cttcacatatttctcatatgcttcttcactcatcattcatctagctctga
agggtcgctcagtgtcatcttgatcagccaaccatctttgtaacaggatt
tgttgacgagccctgggtcttcggcaatggcttcactgacttcagttacc
tctcctgacaaaggtgaggagagctcactggcagccttcacactctccaa
agcaccaaactcctcttgttttttttctcaattttgtcccaacttcaggc
agactacagtaaacaacatcttccaaagcttcctgtgcaaaattgctgat
tcccactgttccaataccttcctctgttgttatccattcatgtttctctg
tgaatttacgcactgacagcaaagcagatccggtgcgcagtgagcagagg
ccagggcggtgcgcaggctgtaggccacaacccgaaagctcctcgaccct
tgcagcgacatgatcagaggtccggagtgggtaactgtgcttcgcctccg
ccaccaggccagcggggtgggatatttgttattgagaattgttaaactga
gtgatttgtgaatgtatgctgctgaaataaaatgaaattaaatagaaacc
tttaaatcaactttgtgtttttaaagaatgaagaataagagtaacagaaa
tggtaccaggaaaaaccaaaaaaccaaaccctcttacttaagtggaatgt
ctctgaggcagagacaaatggagtgtttgcccaagtgaagccagaaatgc
ctgagtttagatacagcctctgtagtgagagatgaggcggttcttcaagc
atgtgcaacttctactgagagaaagga
gaattcagctcccagaaccatgtacaaatccaggtgtggtagtgcggaca
tgaaaactcaacactggggaagcaggtggggccctggcaccagctggcca
gctggcctcccgacttagtgagttccaagccaatgaaaaaaaaggtaatc
agtgttcctgaggaatgacatgggaggttatactatgctctccactctgt
gcacacacacatacacacagagagacacacatacacacatacacaaacac
aagagagacacacatacatgcacacacacacatacatgcatacacacact
atacacacacatacacacagacacacacacatgcacacatacagtcacac
acatacacacagggacacatacatacagacacatacacaaacataagaga
gacacacataaatgcacacacacatagatgcatacacacactatacacac
agagacacatacatgcacacatacaaacagacacacacaaacatgtacac
atacatgcacacacatacatacatgcacacacacacacacacacacacac
acacaccgtacaatccaggtcatttgttgaatctcatgacttccttttga
tatcaaagggcatcagctctaaagcctctgggattatcatatataatcaa
catatatcatcatatataatcaacaaccaggagttgattataatatatat
tatataatatatagaacatatatatataaatcacacatatataatcatat
atactatatattatattacaagcataatataatatataatcgatagccaa
gttcctttggtccttttgggggaaagaaactaaaactcattatcttgaaa
tgtatgatatttgtgttatagggcatgtctatgctcagttgggaaatagc
attggtttcctctggatagagaaaagtctaagacatgatttggggcattg
tgagttgaaacatatggtttttacctaacacaaggagcttggcgggcgtc
agtggtaatcatgatttttttttttttcaacaaggcattggaaatctctc
cctcccgaggaaagcacctggctttggccactctaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_73425172_73426265
seq2: B6Ng01-279A03.b_44_1120 (reverse)

seq1  TCCTTTCTCCTCCTTGTAGAGTTTGCACATGGCTTTGAAGAACCGCCTCA  50
      |||||||| |||   |||||  |||||||||   ||||||||||||||||
seq2  TCCTTTCT-CTC--AGTAGAAGTTGCACATG--CTTGAAGAACCGCCTCA  45

seq1  TCTCTCAACCAACAAGAGCTGTATCTAAAACCTCAGGGCATTTCTGGCCT  100
      |||||||  | |||   ||||||||||||  |||| ||||||||||| ||
seq2  TCTCTCA--CTACAGAGGCTGTATCTAAA--CTCA-GGCATTTCTGG-CT  89

seq1  TCACTTGGGCAAACACTTCCATTTTGTCTCTTGCCTCAGAGACATTCCAC  150
      |||||||||||||||| |||| |||||||| |||||||||||||||||| 
seq2  TCACTTGGGCAAACAC-TCCA-TTTGTCTC-TGCCTCAGAGACATTCCA-  135

seq1  CTTAAGTAAGAGGGTTTTGGTTTTTTGGTTTTTTCCTGGTACCATTTCTG  200
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  CTTAAGTAAGAGGG-TTTGGTTTTTTGG-TTTTTCCTGGTACCATTTCTG  183

seq1  TTACTCTTATTCTTCATTCTTTAAAAACACAAAGTTGATTTAAAGGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTATTCTTCATTCTTTAAAAACACAAAGTTGATTTAAAGGTTTC  233

seq1  TATTTAATTTCATTTTATTTCAGCAGCATACATTCACAAATCACTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTTCATTTTATTTCAGCAGCATACATTCACAAATCACTCAGTT  283

seq1  TAACAATTCTCAATAACAAATATCCCACCCCGCTGGCCTGGTGGCGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTCTCAATAACAAATATCCCACCCCGCTGGCCTGGTGGCGGAGG  333

seq1  CGAAGCACAGTTACCCACTCCGGACCTCTGATCATGTCGCTGCAAGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCACAGTTACCCACTCCGGACCTCTGATCATGTCGCTGCAAGGGTC  383

seq1  GAGGAGCTTTCGGGTTGTGGCCTACAGCCTGCGCACCGCCCTGGCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTTTCGGGTTGTGGCCTACAGCCTGCGCACCGCCCTGGCCTCTG  433

seq1  CTCACTGCGCACCGGATCTGCTTTGCTGTCAGTGCGTAAATTCACAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCGCACCGGATCTGCTTTGCTGTCAGTGCGTAAATTCACAGAGA  483

seq1  AACATGAATGGATAACAACAGAGGAAGGTATTGGAACAGTGGGAATCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAATGGATAACAACAGAGGAAGGTATTGGAACAGTGGGAATCAGC  533

seq1  AATTTTGCACAGGAAGCTTTGGAAGATGTTGTTTACTGTAGTCTGCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCACAGGAAGCTTTGGAAGATGTTGTTTACTGTAGTCTGCCTGA  583

seq1  AGTTGGGACAAAATTGAGAAAAAAAACAAGAGGAGTTTGGTGCTTTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGACAAAATTGAGAAAAAAAACAAGAGGAGTTTGGTGCTTTGGAG  633

seq1  AGTGTGAAGGCTGCCAGTGAGCTCTCCTCACCTTTGTCAGGAGAGGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAAGGCTGCCAGTGAGCTCTCCTCACCTTTGTCAGGAGAGGTAAC  683

seq1  TGAAGTCAGTGAAGCCATTGCCGAAGACCCAGGGCTCGTCAACAAATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCAGTGAAGCCATTGCCGAAGACCCAGGGCTCGTCAACAAATCCT  733

seq1  GTTACAAAGATGGTTGGCTGATCAAGATGACACTGAGCGACCCTTCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAAGATGGTTGGCTGATCAAGATGACACTGAGCGACCCTTCAGAG  783

seq1  CTAGATGAATGATGAGTGAAGAAGCATATGAGAAATATGTGAAGACCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGAATGATGAGTGAAGAAGCATATGAGAAATATGTGAAGACCATG  833

seq1  GCACCCCTCCACTCCAGATCAAACTGGATGTGACCTGCTCCAGCATGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCTCCACTCCAGATCAAACTGGATGTGACCTGCTCCAGCATGCTT  883

seq1  GTCTTAAACTAGTGGAGAGTAGAGGACTTGAAATAACTTTTAGCAATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAACTAGTGGAGAGTAGAGGACTTGAAATAACTTTTAGCAATACT  933

seq1  GATGGAAAGAAACTGTTCTTGACAGTGCTACTTAAGAGCCACCCCCAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAGAAACTGTTCTTGACAGTGCTACTTAAGAGCCACCCCCAACT  983

seq1  TCCTAAAGGATGCAGATAAACACAGTGTACAGATTTTTGATAATTGCCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGGATGCAGATAAACACAGTGTACAGATTTTTGATAATTGCCAT  1033

seq1  ACTAAGTATTTAGACTAGGAGTTAAGCCCTGGTGTTTAGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTATTTAGACTAGGAGTTAAGCCCTGGTGTTTAGAATTC  1077

seq1: chr14_73288401_73289421
seq2: B6Ng01-279A03.g_124_1154

seq1  CAACACTGGGGAAGCAGGTGGGGCCCTGGCACCAGCTGGCCAGCTGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGGGGAAGCAGGTGGGGCCCTGGCACCAGCTGGCCAGCTGGCCT  50

seq1  CCCGACTTAGTGAGTTCCAAGCCAATGAAAAAAAAGGTAATCAGTGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACTTAGTGAGTTCCAAGCCAATGAAAAAAAAGGTAATCAGTGTTCC  100

seq1  TGAGGAATGACATGGGAGGTTATACTATGCTCTCCACTCTGTGCACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATGACATGGGAGGTTATACTATGCTCTCCACTCTGTGCACACAC  150

seq1  ACATACACACAGAGAGACACACATACACACATACACAAACACAAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACAGAGAGACACACATACACACATACACAAACACAAGAGAGA  200

seq1  CACACATACATGCACACACACACATACATGCATACACACACTATACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACATGCACACACACACATACATGCATACACACACTATACACAC  250

seq1  ACATACACACAGACACACACACATGCACACATACAGTCACACACATACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACAGACACACACACATGCACACATACAGTCACACACATACAC  300

seq1  ACAGGGACACATACATACAGACACATACACAAACATAAGAGAGACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACACATACATACAGACACATACACAAACATAAGAGAGACACACA  350

seq1  TAAATGCACACACACATAGATGCATACACACACTATACACACAGAGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCACACACACATAGATGCATACACACACTATACACACAGAGACAC  400

seq1  ATACATGCACACATACAAACAGACACACACAAACATGTACACATACATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCACACATACAAACAGACACACACAAACATGTACACATACATGC  450

seq1  ACACACATACATACATGCACACACACACACACACACACACACACACACCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACATACATGCACACACACACACACACACACACACACACACCG  500

seq1  TACAATCCAGGTCATTTGTTGAATCTCATGACTTCCTTTTGATATCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCCAGGTCATTTGTTGAATCTCATGACTTCCTTTTGATATCAAAG  550

seq1  GGCATCAGCTCTAAAGCCTCTGGGATTATCATATATAATCAACATATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGCTCTAAAGCCTCTGGGATTATCATATATAATCAACATATATC  600

seq1  ATCATATATAATCAACAACCAGGAGTTGATTATAATATATATTATATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATATAATCAACAACCAGGAGTTGATTATAATATATATTATATAAT  650

seq1  ATATAGAACATATATATATAAATCACACATATATAATCATATATACTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAACATATATATATAAATCACACATATATAATCATATATACTATA  700

seq1  TATTATATTACAAGCATAATATAATATATAATCGATAGCCAAGTTCC-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATTATATTACAAGCATAATATAATATATAATCGATAGCCAAGTTCCTTT  750

seq1  GGTCCTTTT-GGGGAAAGAAACTAAAACTCATTATCTTGAAATGTATGAT  798
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTTGGGGGAAAGAAACTAAAACTCATTATCTTGAAATGTATGAT  800

seq1  ATTTGTGTTATA-GGCATGTCTATGCTCAGTT-GGAAATAGCATTGG-TT  845
      |||||||||||| ||||||||||||||||||| |||||||||||||| ||
seq2  ATTTGTGTTATAGGGCATGTCTATGCTCAGTTGGGAAATAGCATTGGTTT  850

seq1  CCTCTGGATAGAG-AAAGTCTAAGACATGATTT-GGGCATTGTGAGTTGA  893
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  CCTCTGGATAGAGAAAAGTCTAAGACATGATTTGGGGCATTGTGAGTTGA  900

seq1  AACATATGTTTTTAACCTAACACAAGGAGCTT-GCGGCCGTCAGTGGTAA  942
      |||||||| |||| |||||||||||||||||| |||| |||||||||| |
seq2  AACATATGGTTTTTACCTAACACAAGGAGCTTGGCGGGCGTCAGTGGT-A  949

seq1  ATCATGA-TTTTTTTTTTTCCAACAAGGGCATT-GAAATCTCT-CCTCCC  989
      ||||||| ||||||||||| |||||| |||||| ||||||||| ||||||
seq2  ATCATGATTTTTTTTTTTTTCAACAA-GGCATTGGAAATCTCTCCCTCCC  998

seq1  -AAGAAAGCAACTGCCTTTGGCCACTCTAAAGG  1021
       | ||||||| ||| ||||||||||||||||||
seq2  GAGGAAAGCACCTGGCTTTGGCCACTCTAAAGG  1031