BAC Information

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BAC

Clone NameB6Ng01-279B17
Chromosome14 (Build37)
Map Location 70,238,827 - 70,407,641
singlet/doubletdoublet
Overlap gene1700081D17Rik, LOC668397
Upstream geneAdam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701
Downstream geneEgr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279B17.bB6Ng01-279B17.g
ACCGA079172GA079173
length1,145167
definitionB6Ng01-279B17.b B6Ng01-279B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,406,520 - 70,407,641)(70,238,827 - 70,239,025)
sequence
gaattcagaagagctgagagtccacagaattcaagtgtcccaccccgggg
aagggggtgggaggctcacagcttggcaagcctacagccagttccttcat
gggaattagaaggaggctcgcctctcttagggtagaagttcatgctatgt
ttgaatgtatcccccaaagtccatagaggaaagactttatcattgatgtg
ctgatggtatttggaagcgatgctatttggcctggatgaggccatgggca
gacggtgttagtggtaagaaggtgaagagaagacacgggtgtgcatgctc
gccctgcttcccaccgtgtgccgctcacacgctggccagatgccaggacc
atgctcgtaggcttctcagccttcagaaccacgactgtgctcacatccct
gttactgctcccctaccgtttttgtatgtgtgtatgcgtgttcatgtgca
ggtaggtgcacacacatgtgcagagaggttagaggataccttgcatggtt
gtccctcaggaatgtcatctactttttgagttagggattctcacttgacc
tggggttcactaatggccaccaagtcccaaagatcctcttgtctctattt
ctccggtgctaggattacagtgtgcattaggtgcctggatgttttaaaat
gtggattctggggattgatctccggtccctatgcttacccagcatccacc
tgactggctggaccatctcttcagtcctaagcccctgttctttgtaagtc
actcatttcttaggtattctattatagtggtagacatcaaggatgggtga
cgtggtaggcggagaacaaacttcttccttcatgagagcagtgaacgact
ctaggaggtggcctaggtcaatgtcctctgccacaccggttggcaaagcc
ttaacttaccagcctcagcttctgacttccccggcacttatcgtctatac
gttgaccctgcttctcaaaaaacatgtgatctacccggttcctaggctcc
tgctgcagcttctattccttcctcagcattcttccttccttcattacttc
ttccagtaccccacttcttgtggacctcagggttcagccctttcaaatgc
cttattacagtccaaaccaggtttcctgtatgcacccaatgggca
tcctggagtatgatggccattgctatttccaggtctccaatgggcagcta
ggattgaaaatgaactactagtgtatgaatttcctttgacttcctccctc
cctccctccctccttccctccctccctccctccctccctccctctctccc
ctttctttccttcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70406520_70407641
seq2: B6Ng01-279B17.b_47_1191 (reverse)

seq1  TGCCCACT-GGTGCATTCAGGGAAACT-GTTTGGACTGTA--TAGGCATT  46
      |||||| | ||||||| |||| || || ||||||||||||   |||||||
seq2  TGCCCATTGGGTGCATACAGGAAACCTGGTTTGGACTGTAATAAGGCATT  50

seq1  TG--AGGGCTG-ACCCTGAG--TCAC-AGAAGT-GGGTACT-GAAG-AGT  87
      ||  ||||||| ||||||||   ||| |||||| ||||||| |||| |||
seq2  TGAAAGGGCTGAACCCTGAGGTCCACAAGAAGTGGGGTACTGGAAGAAGT  100

seq1  AATGA--GGAGGAAG-ATGCTGGAGAAGG-ATAG-AGCTGCAGCAGGAGC  132
      |||||  | |||||| ||||||  ||||| |||| |||||||||||||||
seq2  AATGAAGGAAGGAAGAATGCTGAGGAAGGAATAGAAGCTGCAGCAGGAGC  150

seq1  CTAGGAA-CGGGTAGATCACATGTTTTTTGAGAAGCAGGGTC-ACGTATA  180
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  CTAGGAACCGGGTAGATCACATGTTTTTTGAGAAGCAGGGTCAACGTATA  200

seq1  GACGATAAGTGCC-GGGAAGTCAGAAGCTGAGGCTGGTAAGTT-AGGCTT  228
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GACGATAAGTGCCGGGGAAGTCAGAAGCTGAGGCTGGTAAGTTAAGGCTT  250

seq1  TGCCAACC-GTGTGGCAGAGGACATTTGACCTAGGCCACCTCCTAGAGTC  277
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  TGCCAACCGGTGTGGCAGAGGACA-TTGACCTAGGCCACCTCCTAGAGTC  299

seq1  GTTCACTGCTCTCATG-AGGAAGAAGTTTGTTCTCCGCCTACCACGTCAC  326
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTCACTGCTCTCATGAAGGAAGAAGTTTGTTCTCCGCCTACCACGTCAC  349

seq1  CCATCCTTGATGTCTACCACTATAATAGAATACCTAAGAAATGAGTGACT  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTGATGTCTACCACTATAATAGAATACCTAAGAAATGAGTGACT  399

seq1  TACAAAGAACAGGGGCTTAGGACTGAAGAGATGGTCCAGCCAGTCAGGTG  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAACAGGGGCTTAGGACTGAAGAGATGGTCCAGCCAGTCAGGTG  449

seq1  GATGCTGGGTAAGCATAGGGACCGGAGATCAATCCCCAGAATCCACATTT  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGGTAAGCATAGGGACCGGAGATCAATCCCCAGAATCCACATTT  499

seq1  TAAAACATCCAGGCACCTAATGCACACTGTAATCCTAGCACCGGAGAAAT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATCCAGGCACCTAATGCACACTGTAATCCTAGCACCGGAGAAAT  549

seq1  AGAGACAAGAGGATCTTTGGGACTTGGTGGCCATTAGTGAACCCCAGGTC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAGAGGATCTTTGGGACTTGGTGGCCATTAGTGAACCCCAGGTC  599

seq1  AAGTGAGAATCCCTAACTCAAAAAGTAGATGACATTCCTGAGGGACAACC  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAATCCCTAACTCAAAAAGTAGATGACATTCCTGAGGGACAACC  649

seq1  ATGCAAGGTATCCTCTAACCTCTCTGCACATGTGTGTGCACCTACCTGCA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGTATCCTCTAACCTCTCTGCACATGTGTGTGCACCTACCTGCA  699

seq1  CATGAACACGCATACACACATACAAAAACGGTAGGGGAGCAGTAACAGGG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACACGCATACACACATACAAAAACGGTAGGGGAGCAGTAACAGGG  749

seq1  ATGTGAGCACAGTCGTGGTTCTGAAGGCTGAGAAGCCTACGAGCATGGTC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCACAGTCGTGGTTCTGAAGGCTGAGAAGCCTACGAGCATGGTC  799

seq1  CTGGCATCTGGCCAGCGTGTGAGCGGCACACGGTGGGAAGCAGGGCGAGC  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATCTGGCCAGCGTGTGAGCGGCACACGGTGGGAAGCAGGGCGAGC  849

seq1  ATGCACACCCGTGTCTTCTCTTCACCTTCTTACCACTAACACCGTCTGCC  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACCCGTGTCTTCTCTTCACCTTCTTACCACTAACACCGTCTGCC  899

seq1  CATGGCCTCATCCAGGCCAAATAGCATCGCTTCCAAATACCATCAGCACA  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTCATCCAGGCCAAATAGCATCGCTTCCAAATACCATCAGCACA  949

seq1  TCAATGATAAAGTCTTTCCTCTATGGACTTTGGGGGATACATTCAAACAT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATAAAGTCTTTCCTCTATGGACTTTGGGGGATACATTCAAACAT  999

seq1  AGCATGAACTTCTACCCTAAGAGAGGCGAGCCTCCTTCTAATTCCCATGA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAACTTCTACCCTAAGAGAGGCGAGCCTCCTTCTAATTCCCATGA  1049

seq1  AGGAACTGGCTGTAGGCTTGCCAAGCTGTGAGCCTCCCACCCCCTTCCCC  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGGCTGTAGGCTTGCCAAGCTGTGAGCCTCCCACCCCCTTCCCC  1099

seq1  GGGGTGGGACACTTGAATTCTGTGGACTCTCAGCTCTTCTGAATTC  1122
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGACACTTGAATTCTGTGGACTCTCAGCTCTTCTGAATTC  1145

seq1: chr14_70238827_70239025
seq2: B6Ng01-279B17.g_65_237

seq1  GAATTCTCCTGGAGTATGATGGCCATTGCTATTTCCAGGTCTCCAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGGAGTATGATGGCCATTGCTATTTCCAGGTCTCCAATGGG  50

seq1  CAGCTAGGATTGAAAATGAACTACTAGTGTATGAATTTCCTTTGACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGATTGAAAATGAACTACTAGTGTATGAATTTCCTTTGACTTCC  100

seq1  TCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC  150

seq1  CCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTTCCTTCTTTCCTTCTTCC  199
       |||||                          | |||||||||||||||
seq2  TCTCCC--------------------------CTTTCTTTCCTTCTTCC  173