BAC Information

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BAC

Clone NameB6Ng01-279C02
Chromosome14 (Build37)
Map Location 118,117,365 - 118,118,412
singlet/doubletsinglet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279C02.g
ACCGA079190
length1,046
definitionB6Ng01-279C02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagaaaatgtagcttcaatgctgtacagaagagagcagaagggg
ggtgggcgggaatatgagcatgaacaagagttgtctagcacatgctggct
catcataatttgtatcaatacagtttgggattaaggttcctcactgctta
catttaatctcatggacaataaaaaaatgattaactgcagcatgtcttac
aaatatgctaagtgtgctttacataacagcgcaattgaatattgtaaatg
tcacaatttaggagctcagcaggattctcaggccaatttccaagggaggc
tagagaaggcgctttcccattcttgccgaagtaaacaaagatcaaacgaa
gatacaggaagaaatgattagagagatggagatagtagcctagcatcctg
ggtaaggtttcattagggaaactatttataaagcatgtgagtgtcactaa
tgctgattaatgtcacctgtttgatgtcacttacagtccgtacttcttct
accaggagggatgagatttgccagtgggggaaatgaacggtaccattaca
caaatgatttaggagagctgtttatgttgtgagagagatcttttatttct
tgtcatacggtagtattgccatttctgaccccctcgtggatagatgagca
caaataaattgtcctgcaaagtaagctgtaaggctttgtcagttctagca
caaggctctcaaatgtccttcagacactgtctttctgtcagtcaagtaag
tggtcagactgcagaagtgacttcactgttaacttggattcggtaggatg
aggacagagagtgcagagtcctttcctgactctgaagaggaagggaacaa
ggaagagaatattgatgacttcaagcccctgaagttctggaggattgctg
tagcagatgcggcttctgctgacagatgcggggagctgctttgctctgtg
taaaaagcattacactgcacttctatcagctggcacatggttataattta
tttagtgctcatggagttattatgaaatcatccatttaggtgatca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118117365_118118412
seq2: B6Ng01-279C02.g_64_1109 (reverse)

seq1  TGATCACTTAAATGGGATGATTTTCATAATTACTCCATTGAGCACTAAAT  50
      ||||||| ||||| |||||| ||||||||| |||||| ||||||||||||
seq2  TGATCACCTAAAT-GGATGA-TTTCATAATAACTCCA-TGAGCACTAAAT  47

seq1  AAATAATAACCATGTGCCAGCTGATAG-AGTGCAGTTGTATGCTTTTTAC  99
      |||| |||||||||||||||||||||| ||||||||   |||||||||||
seq2  AAATTATAACCATGTGCCAGCTGATAGAAGTGCAGTGTAATGCTTTTTAC  97

seq1  ACAGAGCAAAGCAGCTCCCCGCATCTGTCAGCAGAAGCCGCATCTGCTAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAAAGCAGCTCCCCGCATCTGTCAGCAGAAGCCGCATCTGCTAC  147

seq1  AGCAATCCTCCAGAACTTCAGGGGCTTGAAGTCATCAATATTCTCTTCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCCTCCAGAACTTCAGGGGCTTGAAGTCATCAATATTCTCTTCCT  197

seq1  TGTTCCCTTCCTCTTCAGAGTCAGGAAAGGACTCTGCACTCTCTGTCCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTTCCTCTTCAGAGTCAGGAAAGGACTCTGCACTCTCTGTCCTC  247

seq1  ATCCTACCGAATCCAAGTTAACAGTGAAGTCACTTCTGCAGTCTGACCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACCGAATCCAAGTTAACAGTGAAGTCACTTCTGCAGTCTGACCAC  297

seq1  TTACTTGACTGACAGAAAGACAGTGTCTGAAGGACATTTGAGAGCCTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGACTGACAGAAAGACAGTGTCTGAAGGACATTTGAGAGCCTTGT  347

seq1  GCTAGAACTGACAAAGCCTTACAGCTTACTTTGCAGGACAATTTATTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACTGACAAAGCCTTACAGCTTACTTTGCAGGACAATTTATTTGT  397

seq1  GCTCATCTATCCACGAGGGGGTCAGAAATGGCAATACTACCGTATGACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCTATCCACGAGGGGGTCAGAAATGGCAATACTACCGTATGACAA  447

seq1  GAAATAAAAGATCTCTCTCACAACATAAACAGCTCTCCTAAATCATTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAAGATCTCTCTCACAACATAAACAGCTCTCCTAAATCATTTGT  497

seq1  GTAATGGTACCGTTCATTTCCCCCACTGGCAAATCTCATCCCTCCTGGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGTACCGTTCATTTCCCCCACTGGCAAATCTCATCCCTCCTGGTA  547

seq1  GAAGAAGTACGGACTGTAAGTGACATCAAACAGGTGACATTAATCAGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTACGGACTGTAAGTGACATCAAACAGGTGACATTAATCAGCAT  597

seq1  TAGTGACACTCACATGCTTTATAAATAGTTTCCCTAATGAAACCTTACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACACTCACATGCTTTATAAATAGTTTCCCTAATGAAACCTTACCC  647

seq1  AGGATGCTAGGCTACTATCTCCATCTCTCTAATCATTTCTTCCTGTATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTAGGCTACTATCTCCATCTCTCTAATCATTTCTTCCTGTATCT  697

seq1  TCGTTTGATCTTTGTTTACTTCGGCAAGAATGGGAAAGCGCCTTCTCTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTGATCTTTGTTTACTTCGGCAAGAATGGGAAAGCGCCTTCTCTAG  747

seq1  CCTCCCTTCGAAATTGGCCTGAGAATCCTGCTGAGCTCCTAAATTGTGAC  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTGGAAATTGGCCTGAGAATCCTGCTGAGCTCCTAAATTGTGAC  797

seq1  ATTTACAATATTCAATTGCGCTGTTATGTAAAGCACACTTAGCATATTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAATATTCAATTGCGCTGTTATGTAAAGCACACTTAGCATATTTG  847

seq1  TAAGACATGCTGCAGTTAATCATTTTTTTATTGTCCATGAGATTAAATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACATGCTGCAGTTAATCATTTTTTTATTGTCCATGAGATTAAATGT  897

seq1  AAGCAGTGAGGAACCTTAATCCCAAACTGTATTGATACAAATTATGATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGAGGAACCTTAATCCCAAACTGTATTGATACAAATTATGATGA  947

seq1  GCCAGCATGTGCTAGACAACTCTTGTTCATGCTCATATTCCCGCCCACCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCATGTGCTAGACAACTCTTGTTCATGCTCATATTCCCGCCCACCC  997

seq1  CCCTTCTGCTCTCTTCTGTACAGCATTGAAGCTACATTTTCTAGAATTC  1048
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGCTCTCTTCTGTACAGCATTGAAGCTACATTTTCTAGAATTC  1046