BAC Information

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BAC

Clone NameB6Ng01-279L17
Chromosome14 (Build37)
Map Location 8,655,943 - 8,819,923
singlet/doubletdoublet
Overlap geneFlnb, Dnase1l3
Upstream geneLOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976
Downstream geneAbhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik, LOC100041948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279L17.bB6Ng01-279L17.g
ACCGA079637GA079638
length1,050706
definitionB6Ng01-279L17.b B6Ng01-279L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,655,943 - 8,656,979)(8,819,218 - 8,819,923)
sequence
gaattcttgcctaggatatgcagagcccagaatttgaaccccagaactga
gtgaacctgtcatggtggcactcacctgtaattccaggacttggtaaagt
agaggcaagatggtcaaaagtttgagatcatcttcaactacatggcagat
ctaaacttactctgggctacatgagaccctgccattcacacacacacaca
cacacacacagatgttaatatgttcattgttaaatttttttgtttgttaa
gagtctcgggctggtgagatggctcagtgggtaagagcacctgactgctc
ttccgaaggtccagagttcaaatcccagcaaccacatggtggctcacaac
catccgtaacaagatctgactccctcttctggtgtgtctgaagacagata
cagtgtacttacatataataataaataaaaaatctttaaaaaaaaaaaaa
agagtctcatgtagcctaggctagccttggaattgcagataatgtcgcct
cttctttccaatttgaaatctatacagagccttttgtatgccagacaacc
tctctactaacatgttatacccttagtgtcttggcttttctctcttactt
cgtctattttattatcttatgtttaactttactctttttttattctaaga
agctggatctgaattataaccccgccttaagcctgatggaatgagccatt
tcaacctaaatgggtaccattcctactttaataatgattacagttgccgt
gcatgatattctactagaaatcagctcttatatcattcatgtaactagtt
actgagtgtgccaatgagcagagtagactcggcttcatcatataatgagc
aatggcatttcttcagaggccttgcggtggggactcatgctttacacggg
acactgagtccatgacctaggagagcatttccttggggaaagatgattaa
cacaccagttgttcttctgtaaggctatggtgcccgaaatggcaagtgga
gggttgggttatttgaaggttaaagaacggggggtgcttggtttatttaa

gaattctctctctgcagatcatcaaacgctgtgaccttatactgttgatg
gaaatcaaggacagcagcaacaacatctgtcccatgctgatggagaagct
gaatgggtaaaggggagagggatgggcctccagacattgtaaagtgcaag
agtgcctgtggtaggggaacaggaaccagtgtcatggctggcatttactc
taaccatcgggcagcgtgaccagggctgagtaggctcccacggtgagctt
tcgcctggctggctttaatatgacagagtaaaaactggaggaaaaaaggg
aagaaatgggacagaaagtgaaaggagtaggtaagaaactgagctaagaa
atcttgctgcaaagtgaaaccagaaggtagaggaaatggttagcatggga
aaatggctacaatgtatcagaaacagtgagttcaggtcaccgtgttactt
tcacatgaatactgcggggaggggtatgtttggatgatcatggaagaaag
ccttggaaggatgagttaacaactattaatgtttacatctggggttataa
gactgagaccaggtgggtgtggtggcgcatgcctttaaccccagcactcg
ggaggcagaggcaggcgaatttctgagtttgatgccagcctggtctacaa
agtgagttccaggacagccagggctatacagagaaaccctgtgggggagg
ggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_8655943_8656979
seq2: B6Ng01-279L17.b_47_1096

seq1  GAATTCTTGCCTAGGATATGCAGAGCCCAGAATTTGAACCCCAGAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTAGGATATGCAGAGCCCAGAATTTGAACCCCAGAACTGA  50

seq1  GTGAACCTGTCATGGTGGCACTCACCTGTAATTCCAGGACTTGGTAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCTGTCATGGTGGCACTCACCTGTAATTCCAGGACTTGGTAAAGT  100

seq1  AGAGGCAAGATGGTCAAAAGTTTGAGATCATCTTCAACTACATGGCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAGATGGTCAAAAGTTTGAGATCATCTTCAACTACATGGCAGAT  150

seq1  CTAAACTTACTCTGGGCTACATGAGACCCTGCCATTCACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTACTCTGGGCTACATGAGACCCTGCCATTCACACACACACACA  200

seq1  CACACACACAGATGTTAATATGTTCATTGTTAAATTTTTTTGTTTGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGATGTTAATATGTTCATTGTTAAATTTTTTTGTTTGTTAA  250

seq1  GAGTCTCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTC  300

seq1  TTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  350

seq1  CATCCGTAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGATA  400

seq1  CAGTGTACTTACATATAATAATAAATAAAAAATCTTTAAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACTTACATATAATAATAAATAAAAAATCTTTAAAAAAAAAAAAA  450

seq1  AGAGTCTCATGTAGCCTAGGCTAGCCTTGGAATTGCAGATAATGTCGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCATGTAGCCTAGGCTAGCCTTGGAATTGCAGATAATGTCGCCT  500

seq1  CTTCTTTCCAATTTGAAATCTATACAGAGCCTTTTGTATGCCAGACAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCCAATTTGAAATCTATACAGAGCCTTTTGTATGCCAGACAACC  550

seq1  TCTCTACTAACATGTTATACCCTTAGTGTCTTGGCTTTTCTCTCTTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTAACATGTTATACCCTTAGTGTCTTGGCTTTTCTCTCTTACTT  600

seq1  CGTCTATTTTATTATCTTATGTTTAACTTTACTCTTTTTTTATTCTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTATTTTATTATCTTATGTTTAACTTTACTCTTTTTTTATTCTAAGA  650

seq1  AGCTGGATCTGAATTATAACCCCGCCTTAAGCCTGATGGAATGAGCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATCTGAATTATAACCCCGCCTTAAGCCTGATGGAATGAGCCATT  700

seq1  TCAACCTAAATGGGTACCATTCCTACTTTAATAATGATTACAGTTGCCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTAAATGGGTACCATTCCTACTTTAATAATGATTACAGTTGCCGT  750

seq1  GCATGATATTCTACTAGAAATCAGCTCTTATATCATTCATGTAACTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATATTCTACTAGAAATCAGCTCTTATATCATTCATGTAACTAGTT  800

seq1  ACTGAGTGTGCCAATGAGCAGAGTAGACTCGGCTTCATCATATAATGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGTGCCAATGAGCAGAGTAGACTCGGCTTCATCATATAATGAGC  850

seq1  AATGGCATTTCTTCAGAGGCCTTGCGGT-GGGACTCATGCTTTACACGGG  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATGGCATTTCTTCAGAGGCCTTGCGGTGGGGACTCATGCTTTACACGGG  900

seq1  ACACTGAGTCCATGACCTAGGGAGAGCATTTCCT--GGGAAAGATGATTA  947
      ||||||||||||||||||| ||||||||||||||  ||||||||||||||
seq2  ACACTGAGTCCATGACCTA-GGAGAGCATTTCCTTGGGGAAAGATGATTA  949

seq1  ACACACCAGGTGGTTCTCTGT-AGGCTATGGTG-CCGAAATGGCAAGT-G  994
      ||||||||| || |  ||||| ||||||||||| |||||||||||||| |
seq2  ACACACCAGTTGTTCTTCTGTAAGGCTATGGTGCCCGAAATGGCAAGTGG  999

seq1  AGGGT--GGGTATTGGA--GGTAAAGA--CGGGGGTGC-TGGTTATTTTA  1037
      |||||  || |||| ||  | ||||||   |||||||| |||||  ||||
seq2  AGGGTTGGGTTATTTGAAGGTTAAAGAACGGGGGGTGCTTGGTTTATTTA  1049

seq1  -  1037
       
seq2  A  1050

seq1: chr14_8819218_8819923
seq2: B6Ng01-279L17.g_67_772 (reverse)

seq1  CTCCCCCCTCCCCCACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCTCCCCCACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA  50

seq1  CTCACTTTGTAGACCAGGCTGGCATCAAACTCAGAAATTCGCCTGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTGTAGACCAGGCTGGCATCAAACTCAGAAATTCGCCTGCCTCT  100

seq1  GCCTCCCGAGTGCTGGGGTTAAAGGCATGCGCCACCACACCCACCTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCGAGTGCTGGGGTTAAAGGCATGCGCCACCACACCCACCTGGTC  150

seq1  TCAGTCTTATAACCCCAGATGTAAACATTAATAGTTGTTAACTCATCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTATAACCCCAGATGTAAACATTAATAGTTGTTAACTCATCCTT  200

seq1  CCAAGGCTTTCTTCCATGATCATCCAAACATACCCCTCCCCGCAGTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTTTCTTCCATGATCATCCAAACATACCCCTCCCCGCAGTATTC  250

seq1  ATGTGAAAGTAACACGGTGACCTGAACTCACTGTTTCTGATACATTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAGTAACACGGTGACCTGAACTCACTGTTTCTGATACATTGTAG  300

seq1  CCATTTTCCCATGCTAACCATTTCCTCTACCTTCTGGTTTCACTTTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCCCATGCTAACCATTTCCTCTACCTTCTGGTTTCACTTTGCAG  350

seq1  CAAGATTTCTTAGCTCAGTTTCTTACCTACTCCTTTCACTTTCTGTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTCTTAGCTCAGTTTCTTACCTACTCCTTTCACTTTCTGTCCCA  400

seq1  TTTCTTCCCTTTTTTCCTCCAGTTTTTACTCTGTCATATTAAAGCCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCTTTTTTCCTCCAGTTTTTACTCTGTCATATTAAAGCCAGCC  450

seq1  AGGCGAAAGCTCACCGTGGGAGCCTACTCAGCCCTGGTCACGCTGCCCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAAAGCTCACCGTGGGAGCCTACTCAGCCCTGGTCACGCTGCCCGA  500

seq1  TGGTTAGAGTAAATGCCAGCCATGACACTGGTTCCTGTTCCCCTACCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGAGTAAATGCCAGCCATGACACTGGTTCCTGTTCCCCTACCACA  550

seq1  GGCACTCTTGCACTTTACAATGTCTGGAGGCCCATCCCTCTCCCCTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCTTGCACTTTACAATGTCTGGAGGCCCATCCCTCTCCCCTTTAC  600

seq1  CCATTCAGCTTCTCCATCAGCATGGGACAGATGTTGTTGCTGCTGTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAGCTTCTCCATCAGCATGGGACAGATGTTGTTGCTGCTGTCCTT  650

seq1  GATTTCCATCAACAGTATAAGGTCACAGCGTTTGATGATCTGCAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCATCAACAGTATAAGGTCACAGCGTTTGATGATCTGCAGAGAGA  700

seq1  GAATTC  706
      ||||||
seq2  GAATTC  706