BAC Information

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BAC

Clone NameB6Ng01-279N05
Chromosome14 (Build37)
Map Location 115,973,736 - 115,974,909
singlet/doubletsinglet
Overlap geneGpc5
Upstream geneLOC100043521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279N05.bB6Ng01-279N05.g
ACCGA079705GA079706
length1,1751,185
definitionB6Ng01-279N05.b B6Ng01-279N05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgtaaatacaattcattatgagtactttactcttctaaaatg
ctagagaatttaaaattatacattggcacataagaacaatacattggcct
gatatggatatactgtgcttatcaataatacaaggcacagagagaagata
cacagaacatttgcaactatagcagttacttaacaactttcccttttaac
ctttttaaaatgttgttgacattataaatcatctagatcaagtttcaatc
tagttataaatattcataccctttgttcatagcacagcaacattttcaag
tatcaattgctcatgtcctctgttctatatttcagtttattgatataagg
tattaaacctaacagttgctaagaactagtattgatgtcattgttacccc
caccccacactcctctcaacactgaaaattcatcactggaaaagggaaat
gataatgggctattgaaaaggaaaattctttgccaatcaccagttctcat
tgaaaccattgctcaatagatgataaagtattgaagtgttttggggaaat
attcttcaagtatataacatgcatgtccaccctaataaattattatacaa
atcagggaaagagaaaaatcaattcagtgctgtttaattttgtgtcatca
tgtatcctacatatccatgtagcttctctccattgcttaaccattgcact
acttaagctgttaaactctgaacaataacagcaatgttaaaagtctcatc
tgtttcctcttctaactctcatgtgtctgtactctcgttgccacccttgc
cctgctcatctggtttctaaacatctgacacacagagatcctagttaatg
ttgtaaattacttcagtgcatatctacctacctgactttatgctacttca
attttagttatggttgtgattaaatcaagcagaaatatcagcatgggagt
attattgctacattatcccacagagtaaagaatgtatacttgtgtttgaa
atgtggtcaatttttataatgtccctcctataactaactgactgtgcaat
acctatcatacataggcctcaatggaaattctttcatttttattggtttt
ttttgtagctaaacaataaacacatgggcacattttaaccttgcatcagg
tctcctgatgaataccagagctgga

gaattctttggctctgtaccccatttttaatagggttatttgtttctctg
aagtctaacttcttgagttctttgtatatattggatattagccctctatc
acatttaggatatgtaaagatcttttcccaatctcttggttgcctttttg
tcttattgacagtgtcctttgcttcacagaagctttgcaattttatgaag
tccaatttgtcaattcttgatcttgcagcacaagccattgttgttctgtt
caggaaaaatttccctgtgcccatatgttcgaggctcttccccactttct
cctctataagtttcagtgtatctggttttatgtcgaggtccttgatccac
ttggacttgagttttgttcaaggagataagagtggatcaatttacattct
tgtacatgctaacctccagttgagccatcaccatttgttgaaaatgatgt
cttttttccactgaatggttttagctcctttgtcaaagatcaagtgacca
tagatgtgtgagttcatttctgggtcttcaattctattccattgatctac
ctgcctgtcactgtaccaataccatgcagtgtttatcacaattgctctgt
agtacagcttgaggtcagggatagagattccatgagcagttcttttattg
ttgagaatagttttagctatcctttattttttgttattccagatgaattt
ggaaattgctctttctaaatctatgaagaattgagttgggattttgatgg
ggattgcattgaatctgtagattactttaggcaagatagccatttttact
atattagtcctgccaacgcatgagcatggaagatctcttcatcttctgac
acctttttaatgtctttcttcagagacttgaagttcttatcatacagatc
tttcacttgcttagttagagtcacaccaatgtattttatataatttgtta
ctattgagaagggtgttgttttcctaatttctttctcaccctgtttatcc
ttgtgtagtggaaggccactgattttgtttgagtaatttatattccagct
tttgcactaagccttgttttatcagattaggagttctttgggtggattcg
cttcctctaagtatactatcctatactggcaaataagggatatattggaa
ttttcctcttattcaacgtatgtataatcccccgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_115973736_115974909
seq2: B6Ng01-279N05.b_48_1222

seq1  GAATTCTCTGTAAATACAATTCATTATGAGTACTTTACTCTTCTAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAAATACAATTCATTATGAGTACTTTACTCTTCTAAAATG  50

seq1  CTAGAGAATTTAAAATTATACATTGGCACATAAGAACAATACATTGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAATTTAAAATTATACATTGGCACATAAGAACAATACATTGGCCT  100

seq1  GATATGGATATACTGTGCTTATCAATAATACAAGGCACAGAGAGAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGATATACTGTGCTTATCAATAATACAAGGCACAGAGAGAAGATA  150

seq1  CACAGAACATTTGCAACTATAGCAGTTACTTAACAACTTTCCCTTTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACATTTGCAACTATAGCAGTTACTTAACAACTTTCCCTTTTAAC  200

seq1  CTTTTTAAAATGTTGTTGACATTATAAATCATCTAGATCAAGTTTCAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAATGTTGTTGACATTATAAATCATCTAGATCAAGTTTCAATC  250

seq1  TAGTTATAAATATTCATACCCTTTGTTCATAGCACAGCAACATTTTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAAATATTCATACCCTTTGTTCATAGCACAGCAACATTTTCAAG  300

seq1  TATCAATTGCTCATGTCCTCTGTTCTATATTTCAGTTTATTGATATAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTGCTCATGTCCTCTGTTCTATATTTCAGTTTATTGATATAAGG  350

seq1  TATTAAACCTAACAGTTGCTAAGAACTAGTATTGATGTCATTGTTACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACCTAACAGTTGCTAAGAACTAGTATTGATGTCATTGTTACCCC  400

seq1  CACCCCACACTCCTCTCAACACTGAAAATTCATCACTGGAAAAGGGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACACTCCTCTCAACACTGAAAATTCATCACTGGAAAAGGGAAAT  450

seq1  GATAATGGGCTATTGAAAAGGAAAATTCTTTGCCAATCACCAGTTCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGGGCTATTGAAAAGGAAAATTCTTTGCCAATCACCAGTTCTCAT  500

seq1  TGAAACCATTGCTCAATAGATGATAAAGTATTGAAGTGTTTTGGGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCATTGCTCAATAGATGATAAAGTATTGAAGTGTTTTGGGGAAAT  550

seq1  ATTCTTCAAGTATATAACATGCATGTCCACCCTAATAAATTATTATACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAAGTATATAACATGCATGTCCACCCTAATAAATTATTATACAA  600

seq1  ATCAGGGAAAGAGAAAAATCAATTCAGTGCTGTTTAATTTTGTGTCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGAAAGAGAAAAATCAATTCAGTGCTGTTTAATTTTGTGTCATCA  650

seq1  TGTATCCTACATATCCATGTAGCTTCTCTCCATTGCTTAACCATTGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTACATATCCATGTAGCTTCTCTCCATTGCTTAACCATTGCACT  700

seq1  ACTTAAGCTGTTAAACTCTGAACAATAACAGCAATGTTAAAAGTCTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGCTGTTAAACTCTGAACAATAACAGCAATGTTAAAAGTCTCATC  750

seq1  TGTTTCCTCTTCTAACTCTCATGTGTCTGTACTCTCGTTGCCACCCTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTCTTCTAACTCTCATGTGTCTGTACTCTCGTTGCCACCCTTGC  800

seq1  CCTGCTCATCTGGTTTCTAAACATCTGACACACAGAGATCCTAGTTAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCATCTGGTTTCTAAACATCTGACACACAGAGATCCTAGTTAATG  850

seq1  TTGTAAATTACTTCAGTGCATATCTACCTACCTGACTTTATGCTACTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATTACTTCAGTGCATATCTACCTACCTGACTTTATGCTACTTCA  900

seq1  ATTTTAGTTATGGTTGTGATTAAATCAAGCAGAAATATCAGCAT-GGAGT  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTTTAGTTATGGTTGTGATTAAATCAAGCAGAAATATCAGCATGGGAGT  950

seq1  ATTATTGCTACATTATCCCACAGAGTAAAGAATGTATACTTGTGTTTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCTACATTATCCCACAGAGTAAAGAATGTATACTTGTGTTTGAA  1000

seq1  ATGTGGTCAA-TTTTATAATGTCCCTCCTATAACTAACTGACTGTGCAAT  1048
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCAATTTTTATAATGTCCCTCCTATAACTAACTGACTGTGCAAT  1050

seq1  ACCTTATCATACCATAGGCCTCAATGGAAATTCTTCAATTTTTATTGGGT  1098
      ||| ||||||| |||||||||||||||||||||||  ||||||||||| |
seq2  ACC-TATCATA-CATAGGCCTCAATGGAAATTCTTTCATTTTTATTGGTT  1098

seq1  TTTTTTGTAGCTAACAATTAAACACAT-GGCACATTTTACCTTTGCATCA  1147
      ||||||||||||||  | ||||||||| ||||||||||| | ||||||||
seq2  TTTTTTGTAGCTAAACAATAAACACATGGGCACATTTTAACCTTGCATCA  1148

seq1  GTGTCTCCTGATG-ATACAGAAGCTGGA  1174
      | ||||||||||| ||||   |||||||
seq2  G-GTCTCCTGATGAATACCAGAGCTGGA  1175


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