BAC Information

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BAC

Clone NameB6Ng01-279O08
Chromosome14 (Build37)
Map Location 73,399,892 - 73,532,251
singlet/doubletdoublet
Overlap geneLOC668489, Cysltr2, LOC100043149
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487
Downstream geneRcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279O08.bB6Ng01-279O08.g
ACCGA079759GA079760
length1,1391,110
definitionB6Ng01-279O08.b B6Ng01-279O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,399,892 - 73,401,024)(73,531,147 - 73,532,251)
sequence
gaattcttcggtgtggcctggcatatctattagtttactccagaggggtg
tgttcacgatgttaggatgtcaaagaaaagacagtgatttttttttcaga
agctgctggcaaaggggatatggctagcagctatcaagctcttgaaatat
gaaaattaattaaattcaatttggagaatgagaatcatcacttcagataa
ggatactgtgataaataatgccttcagtaagaaaagcactccttgccgtg
cctccagggtctcattctgaggctcgctgaaatgcaaacaaacgaacgaa
cgaacaaacagagtttatgaaacaaattgtattaatgacaacaagccagt
ctcgggctccaacacaatccagcaagggctggaggccaagatctgtggag
tttgtctcaggagcctctgcccaaagccacagggttgggaaaaaaaagat
gagaggcacaagaatgccccacagctccccctagtgttggtgtctggtat
tccacctgagcccagacttatttgtaattagtaaactgatttttttccct
ttcagcaggactccttaacagtaatcaaacactacatcgcgcacccacga
gatcctctcactcctctacgctgagagtctttttattttatgatagttgt
cttaaaccaaatgaggaggacgagacgatgaacagacggacctgcccaag
aaaccaagatcggggatgggaatgcgatagataatcccttatttaaggaa
aacaatcctctccatgtctcagtgcctcattttgagagtttccgaaatgc
aaacgacaacagcaaaagagttgttgctgggtacttgtctaacatggcac
tgagtaaaccggatgtggtggctcgtgcctaaaatcccacgacctggggt
ggttaaaagcagagggattaggagttgggaagtcatcctcgaccacatac
tgaaattagaggccaacctaagatatacaagactctgtcgtagacaaagc
aatgaaatgaatgacgagtgattgaacgggatttgatgtcttcttgctag
ttttttgtgatggggacaaaattaaaatttggtttcttcttccaataaag
cttggagtaaccatggtgtctgctttctagagcttacaa
gaattccctatcctgtggtgctgtggcactctccctgcagaatcccaaag
agcaagagcccagctctaaccaactcatgcataggttgctaaccacgaga
atacagagaagacgcaagagagtgtgaattttccaatctcaatcgccatt
taaagtaagtttggaatggctactccacagaatttcccagaaatgactga
gactttcgcaacacatattttaagtgacgaacgctgattttgttgccaga
tctgcaggttggtttgcctaaaaatgtttactttctgtccctgtcttctc
ttcgcgccaacagccggtagcaggctgcctcgtaagaactgaactgaagt
aaggcggtggaaggggggagtcctgtggtcatctgtagctgtccggaagc
cggctgatctcatcgccactctcagttttagctgaaaatcaaagctctga
aggaaaggacacactcagggcctctcgctccaccctggttactaaccctg
ggcacacagaacctgaattctgcagctaggacttctcatttctgagcctt
aagcaggatcaagatgaaaacactagtcggagttcattttatcttcccct
gacaatgctcagtgaaatgtcctttttcaatcagacatgtttcagtatgt
attgtaggagcaaatggtgtttataagggtaaattttatatatccaatat
ttaaagtatattttgaagctagcaatctctaactgaattgtgaaagtttg
ttatgttgacttgtgcttcagtattctgacctataaagagagcactctgt
acatttgggcttgttttaatgaacgtggcagaataacattttgaggtaac
atgcacaaacacccagagacatgaaagtagggagggaactatttggggag
aaagagggtttcagtagagctttatgggatgtattatgattaaatttcat
tataaaatttaccctctgaaatgaattcacctttgtactgagtctctttt
taaaaaaatagaaaatgaattcttctctcaatatagtgtattctgatcag
ttttccccttgcctctgatcatatcaggccctcctccttccgtctcgcag
gattccacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_73399892_73401024
seq2: B6Ng01-279O08.b_47_1185

seq1  GAATTCTTCGGTGTGGCCTGGCATATCTATTAGTTTACTCCAGAGGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGGTGTGGCCTGGCATATCTATTAGTTTACTCCAGAGGGGTG  50

seq1  TGTTCACGATGTTAGGATGTCAAAGAAAAGACAGTGATTTTTTTTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACGATGTTAGGATGTCAAAGAAAAGACAGTGATTTTTTTTTCAGA  100

seq1  AGCTGCTGGCAAAGGGGATATGGCTAGCAGCTATCAAGCTCTTGAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGGCAAAGGGGATATGGCTAGCAGCTATCAAGCTCTTGAAATAT  150

seq1  GAAAATTAATTAAATTCAATTTGGAGAATGAGAATCATCACTTCAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAATTAAATTCAATTTGGAGAATGAGAATCATCACTTCAGATAA  200

seq1  GGATACTGTGATAAATAATGCCTTCAGTAAGAAAAGCACTCCTTGCCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTGTGATAAATAATGCCTTCAGTAAGAAAAGCACTCCTTGCCGTG  250

seq1  CCTCCAGGGTCTCATTCTGAGGCTCGCTGAAATGCAAACAAACGAACGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGGTCTCATTCTGAGGCTCGCTGAAATGCAAACAAACGAACGAA  300

seq1  CGAACAAACAGAGTTTATGAAACAAATTGTATTAATGACAACAAGCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAAACAGAGTTTATGAAACAAATTGTATTAATGACAACAAGCCAGT  350

seq1  CTCGGGCTCCAACACAATCCAGCAAGGGCTGGAGGCCAAGATCTGTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGCTCCAACACAATCCAGCAAGGGCTGGAGGCCAAGATCTGTGGAG  400

seq1  TTTGTCTCAGGAGCCTCTGCCCAAAGCCACAGGGTTGGGAAAAAAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCAGGAGCCTCTGCCCAAAGCCACAGGGTTGGGAAAAAAAAGAT  450

seq1  GAGAGGCACAAGAATGCCCCACAGCTCCCCCTAGTGTTGGTGTCTGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCACAAGAATGCCCCACAGCTCCCCCTAGTGTTGGTGTCTGGTAT  500

seq1  TCCACCTGAGCCCAGACTTATTTGTAATTAGTAAACTGATTTTTTTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGAGCCCAGACTTATTTGTAATTAGTAAACTGATTTTTTTCCCT  550

seq1  TTCAGCAGGACTCCTTAACAGTAATCAAACACTACATCGCGCACCCACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGGACTCCTTAACAGTAATCAAACACTACATCGCGCACCCACGA  600

seq1  GATCCTCTCACTCCTCTACGCTGAGAGTCTTTTTATTTTATGATAGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTCACTCCTCTACGCTGAGAGTCTTTTTATTTTATGATAGTTGT  650

seq1  CTTAAACCAAATGAGGAGGACGAGACGATGAACAGACGGACCTGCCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACCAAATGAGGAGGACGAGACGATGAACAGACGGACCTGCCCAAG  700

seq1  AAACCAAGATCGGGGATGGGAATGCGATAGATAATCCCTTATTTAAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGATCGGGGATGGGAATGCGATAGATAATCCCTTATTTAAGGAA  750

seq1  AACAATCCTCTCCATGTCTCAGGTGCCTCATTTTGAGAGTTTCCGAAATG  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACAATCCTCTCCATGTCTCA-GTGCCTCATTTTGAGAGTTTCCGAAATG  799

seq1  CAAACGACAACAGCAAAAGAGTTGTTGCTGGGTACTTGTCTAACATGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGACAACAGCAAAAGAGTTGTTGCTGGGTACTTGTCTAACATGGCA  849

seq1  CTGAGTAAACCGGATGTGGTGGCTCGTGCCTAAAATCCCACGACCT-GGG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGAGTAAACCGGATGTGGTGGCTCGTGCCTAAAATCCCACGACCTGGGG  899

seq1  TGGTTAAAAGCAGAGGGATTAGGAGTT-GGAAGTCATCCTCGACCACATA  948
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGTTAAAAGCAGAGGGATTAGGAGTTGGGAAGTCATCCTCGACCACATA  949

seq1  CTG-AATTAGAGGCCAACCTAAGATATACAAGACTCTGTCGTAGACAAAG  997
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTAGAGGCCAACCTAAGATATACAAGACTCTGTCGTAGACAAAG  999

seq1  CAATG-AATGAATGAACGAGTGATTGAAC-GGATTTGATGTCTTCTTTGC  1045
      ||||| |||||||| |||||||||||||| ||||||||||||||| ||||
seq2  CAATGAAATGAATG-ACGAGTGATTGAACGGGATTTGATGTCTTC-TTGC  1047

seq1  TAGTTTTTGTGGATGGGGACAAAATTAAAATTT-GTTTCTTC-TCCAATA  1093
      ||||||||   |||||||||||||||||||||| |||||||| |||||||
seq2  TAGTTTTTTGTGATGGGGACAAAATTAAAATTTGGTTTCTTCTTCCAATA  1097

seq1  AAGC-TGGAGTAACCCATGTGTCTGCTTCTCAGAGC-TACAA  1133
      |||| ||||||||||   ||||||||||   ||||| |||||
seq2  AAGCTTGGAGTAACCATGGTGTCTGCTTTCTAGAGCTTACAA  1139

seq1: chr14_73531147_73532251
seq2: B6Ng01-279O08.g_67_1176 (reverse)

seq1  ATGTGGATCTGGGGGAGACGGGAAGGGAGGGAGGGCTGATATGATCAGAG  50
      |||||||     | |||||||  | |||||  || |||||||||||||||
seq2  ATGTGGAATCCTGCGAGACGG--AAGGAGGAGGGCCTGATATGATCAGAG  48

seq1  GCA--GGGGAAACTGATCAGAATACACTATA-TGAGAGAAGAATTCATTT  97
      |||  ||| |||||||||||||||||||||| ||||||||||||||||||
seq2  GCAAGGGGAAAACTGATCAGAATACACTATATTGAGAGAAGAATTCATTT  98

seq1  TCTATTTTTTTAAAAAGAGACTCAGTACAAAGGTGAATTCA-TTCAGAGG  146
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTATTTTTTTAAAAAGAGACTCAGTACAAAGGTGAATTCATTTCAGAGG  148

seq1  GTAATTTTTATAATGAAATTTAATCAT-ATACATCCCAT-AAGCTCTACT  194
      |||| |||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GTAAATTTTATAATGAAATTTAATCATAATACATCCCATAAAGCTCTACT  198

seq1  GAACCCCTCTTTTCTCCCAAATAGTTCCCT-CCTACTTTCATGTCTCTGG  243
      ||| ||||||||   ||||||||||||||| |||||||||||||||||||
seq2  GAAACCCTCTTTCTCCCCAAATAGTTCCCTCCCTACTTTCATGTCTCTGG  248

seq1  GTGTTTGTGCATGTTACCTCAAAATGTTATTCTGCCACGTTCATTAAAAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGCATGTTACCTCAAAATGTTATTCTGCCACGTTCATTAAAAC  298

seq1  AAGCCCAAATGTACAGAGTGCTCTCTTTATAGGTCAGAATACTGAAGCAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAAATGTACAGAGTGCTCTCTTTATAGGTCAGAATACTGAAGCAC  348

seq1  AAGTCAACATAACAAACTTTCACAATTCAGTTAGAGATTGCTAGCTTCAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACATAACAAACTTTCACAATTCAGTTAGAGATTGCTAGCTTCAA  398

seq1  AATATACTTTAAATATTGGATATATAAAATTTACCCTTATAAACACCATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTTTAAATATTGGATATATAAAATTTACCCTTATAAACACCATT  448

seq1  TGCTCCTACAATACATACTGAAACATGTCTGATTGAAAAAGGACATTTCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTACAATACATACTGAAACATGTCTGATTGAAAAAGGACATTTCA  498

seq1  CTGAGCATTGTCAGGGGAAGATAAAATGAACTCCGACTAGTGTTTTCATC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATTGTCAGGGGAAGATAAAATGAACTCCGACTAGTGTTTTCATC  548

seq1  TTGATCCTGCTTAAGGCTCAGAAATGAGAAGTCCTAGCTGCAGAATTCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTGCTTAAGGCTCAGAAATGAGAAGTCCTAGCTGCAGAATTCAG  598

seq1  GTTCTGTGTGCCCAGGGTTAGTAACCAGGGTGGAGCGAGAGGCCCTGAGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGTGCCCAGGGTTAGTAACCAGGGTGGAGCGAGAGGCCCTGAGT  648

seq1  GTGTCCTTTCCTTCAGAGCTTTGATTTTCAGCTAAAACTGAGAGTGGCGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTTCCTTCAGAGCTTTGATTTTCAGCTAAAACTGAGAGTGGCGA  698

seq1  TGAGATCAGCCGGCTTCCGGACAGCTACAGATGACCACAGGACTCCCCCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAGCCGGCTTCCGGACAGCTACAGATGACCACAGGACTCCCCCC  748

seq1  TTCCACCGCCTTACTTCAGTTCAGTTCTTACGAGGCAGCCTGCTACCGGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCGCCTTACTTCAGTTCAGTTCTTACGAGGCAGCCTGCTACCGGC  798

seq1  TGTTGGCGCGAAGAGAAGACAGGGACAGAAAGTAAACATTTTTAGGCAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCGCGAAGAGAAGACAGGGACAGAAAGTAAACATTTTTAGGCAAA  848

seq1  CCAACCTGCAGATCTGGCAACAAAATCAGCGTTCGTCACTTAAAATATGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGCAGATCTGGCAACAAAATCAGCGTTCGTCACTTAAAATATGT  898

seq1  GTTGCGAAAGTCTCAGTCATTTCTGGGAAATTCTGTGGAGTAGCCATTCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCGAAAGTCTCAGTCATTTCTGGGAAATTCTGTGGAGTAGCCATTCC  948

seq1  AAACTTACTTTAAATGGCGATTGAGATTGGAAAATTCACACTCTCTTGCG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACTTTAAATGGCGATTGAGATTGGAAAATTCACACTCTCTTGCG  998

seq1  TCTTCTCTGTATTCTCGTGGTTAGCAACCTATGCATGAGTTGGTTAGAGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGTATTCTCGTGGTTAGCAACCTATGCATGAGTTGGTTAGAGC  1048

seq1  TGGGCTCTTGCTCTTTGGGATTCTGCAGGGAGAGTGCCACAGCACCACAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTTGCTCTTTGGGATTCTGCAGGGAGAGTGCCACAGCACCACAG  1098

seq1  GATAGGGAATTC  1105
      ||||||||||||
seq2  GATAGGGAATTC  1110