BAC Information

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BAC

Clone NameB6Ng01-280H01
Chromosome14 (Build37)
Map Location 100,475,289 - 100,643,284
singlet/doubletdoublet
Overlap geneKlf12
Upstream geneDis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684, 1700110M21Rik, LOC100043421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280H01.bB6Ng01-280H01.g
ACCGA080164GA080165
length1,0811,147
definitionB6Ng01-280H01.b B6Ng01-280H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,475,289 - 100,476,364)(100,642,155 - 100,643,284)
sequence
gaattccatacaatatattttgatcaaattcattctcactcccccagctc
ctttcagatcttctctatctccctccttacctgactttattatctccttg
tccctctcttccctagactttgggacatgccctaggctattttagaaata
tcatgtgccactccattgaagaaagctggcttcccctctcccagaagcaa
tcaagtgtcaatagctccttggccaaagtgggacttcatgcttgcttccc
atcctccactctgggattttgtctggcttgagcttgtacaggtctttgtg
catactgtcacagtttcaagggtgcatttttaaccactaaatgccttggg
gaaatttctttctcactatcttagtgcccttttcccaccactctcaatga
atgatcgctaaaacactgttcatattgggttgaccataggagacctgttt
tcctctcttataattgtgaacagcacaagtattttattaagccatagatt
ccagagcttggaaggaagaaagggaacatggccccttgtatgctgttctt
tatttctctccttcttaggcagggggtgaagtcgatgaggtgtcacataa
aaaccagggaagcaggattcgcttagtgagaagccactgtcattgagact
catgtgttccattgtggggactgttctagaactgcgggcaacatggcatt
tataaccataaagacagagtgagttatcctgtaatttgtgcctctccccc
atctttctcagcatgttaacatgaaggtgatgtttagtattgaggacaag
gtggcctgaagatatttccatgggcaacagagaggtccctacagatcttt
gtcttctaaagggtgatggtatttattagaggctgcctgttccacagcct
gtaattattcattaggtagggaaaaggtggtcgaacgttgggtggactgc
cctggctgatgctttctgactaattttctttagcacagccttgaaataaa
ttcccaagattattagaaccctcagcccattctcttttctcatatgtgaa
gcgatagcttaggtacgggttagacggtact

gaattccaggttcaatgtagaacccctgcctcaaaacatgaggtgaagag
tgatcaagtgaggacctcctgccagtctctgtatgtgtccaagcacacat
ttgcacacgcatgcacataccacatgaacacacatatgcccatactcata
tacgcacttacacacacacacataaatagatagaatgtttgggtcaggcc
aacaggcaaatctcaacagcgtgtgtctgaagcttctagatctgtgattg
aggacgagggagcactacagcttacacaggttttataataatggattaca
aaagagtgaacactctttaagcatgctcggagcacacactttattcaaag
gtgctctgaagagcgagtgattcggctgttctgagatttctagtagcatg
tgttggtaatggctgtcgcaggaaagatgaaatacatgagactgtcccat
ctcatggttcaatggtcacatgcagagtttgtagaagggacacttggctg
agctttggtgagtgctccgtctccatgtaaacccttgctgatgaagacgc
aaagcgaaacttactttatactcatcgagaactcattgaagttcataaaa
tctattgaaaccattgtcccatctttgagcatagggataaaagtagttta
gaatgcaatatttttgcatgcatttgtatgtacacttccacagtttccca
caaagtcgactatcactcccaagaaacttgaatgcatgaagctccaaagc
gtgcattgtaaaaattgtgaactatggtttcaaagctcaactagcttaca
taaagggggaaagaggtggaatttggacgcagaagcgactgactaaacta
ttttttgcctcagaatggccgcttacaaaggccaaaaccacactccacct
gtctggcactctatacagggttttattatgtttattctgttgtcattaaa
agagaacaggcagagaacatcttgtctcctttcatacaacatatattatt
atttttttatatatttggtggggactccaggtggaataccaggaaggtta
aaaaaaataaacttctgctattaacagcaaccatttgtgggaaagtcatg
ggaggaaaagagacaggggatggacttcctgccacaggtaattactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_100475289_100476364
seq2: B6Ng01-280H01.b_48_1128

seq1  GAATTCCATACAATATATTTTGATCAAATTCATTCTCACTCCCCCAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACAATATATTTTGATCAAATTCATTCTCACTCCCCCAGCTC  50

seq1  CTTTCAGATCTTCTCTATCTCCCTCCTTACCTGACTTTATTATCTCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGATCTTCTCTATCTCCCTCCTTACCTGACTTTATTATCTCCTTG  100

seq1  TCCCTCTCTTCCCTAGACTTTGGGACATGCCCTAGGCTATTTTAGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTTCCCTAGACTTTGGGACATGCCCTAGGCTATTTTAGAAATA  150

seq1  TCATGTGCCACTCCATTGAAGAAAGCTGGCTTCCCCTCTCCCAGAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCCACTCCATTGAAGAAAGCTGGCTTCCCCTCTCCCAGAAGCAA  200

seq1  TCAAGTGTCAATAGCTCCTTGGCCAAAGTGGGACTTCATGCTTGCTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTCAATAGCTCCTTGGCCAAAGTGGGACTTCATGCTTGCTTCCC  250

seq1  ATCCTCCACTCTGGGATTTTGTCTGGCTTGAGCTTGTACAGGTCTTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCACTCTGGGATTTTGTCTGGCTTGAGCTTGTACAGGTCTTTGTG  300

seq1  CATACTGTCACAGTTTCAAGGGTGCATTTTTAACCACTAAATGCCTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGTCACAGTTTCAAGGGTGCATTTTTAACCACTAAATGCCTTGGG  350

seq1  GAAATTTCTTTCTCACTATCTTAGTGCCCTTTTCCCACCACTCTCAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCTTTCTCACTATCTTAGTGCCCTTTTCCCACCACTCTCAATGA  400

seq1  ATGATCGCTAAAACACTGTTCATATTGGGTTGACCATAGGAGACCTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCGCTAAAACACTGTTCATATTGGGTTGACCATAGGAGACCTGTTT  450

seq1  TCCTCTCTTATAATTGTGAACAGCACAAGTATTTTATTAAGCCATAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTATAATTGTGAACAGCACAAGTATTTTATTAAGCCATAGATT  500

seq1  CCAGAGCTTGGAAGGAAGAAAGGGAACATGGCCCCTTGTATGCTGTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTTGGAAGGAAGAAAGGGAACATGGCCCCTTGTATGCTGTTCTT  550

seq1  TATTTCTCTCCTTCTTAGGCAGGGGGTGAAGTCGATGAGGTGTCACATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTCCTTCTTAGGCAGGGGGTGAAGTCGATGAGGTGTCACATAA  600

seq1  AAACCAGGGAAGCAGGATTCGCTTAGTGAGAAGCCACTGTCATTGAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGGAAGCAGGATTCGCTTAGTGAGAAGCCACTGTCATTGAGACT  650

seq1  CATGTGTTCCATTGTGGGGACTGTTCTAGAACTGCGGGCAACATGGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCCATTGTGGGGACTGTTCTAGAACTGCGGGCAACATGGCATT  700

seq1  TATAACCATAAAGACAGAGTGAGTTATCCTGTAATTTGTGCCTCTCCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCATAAAGACAGAGTGAGTTATCCTGTAATTTGTGCCTCTCCCCC  750

seq1  ATCTTTCTCAGCATGTTAACATGAAGGTGATGTTTAGTATTGAGGACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTCAGCATGTTAACATGAAGGTGATGTTTAGTATTGAGGACAAG  800

seq1  GTGGCCTGAAGATATTTCCAT-GGCAACAGAGAGGTCCCTACAGATCTTT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGGCCTGAAGATATTTCCATGGGCAACAGAGAGGTCCCTACAGATCTTT  850

seq1  GTCTTCT-AAGGGTGATGGTATTTATTAGAGGCTGCCTGTTCCACAGCCT  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTAAAGGGTGATGGTATTTATTAGAGGCTGCCTGTTCCACAGCCT  900

seq1  GTAATTA-TCATTAGGTAGGG-AAAGGTGGTCGAACG-TGGGTGGACTG-  944
      ||||||| ||||||||||||| ||||||||||||||| ||||||||||| 
seq2  GTAATTATTCATTAGGTAGGGAAAAGGTGGTCGAACGTTGGGTGGACTGC  950

seq1  CCTGGCTGATGCTTTCTGACTAA-TTTCTTTAGCACAGCCCTGAAATAAA  993
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CCTGGCTGATGCTTTCTGACTAATTTTCTTTAGCACAGCCTTGAAATAAA  1000

seq1  TTCCCAAAGAATATTAAGAACCTCAGCCCATTCTTCTTTTCTCCATAGGT  1043
      ||||| |||| |||||  | ||||||||||||| |||||||| |||| ||
seq2  TTCCC-AAGATTATTAGAACCCTCAGCCCATTC-TCTTTTCT-CATATGT  1047

seq1  GAAGCGATAGC-TAAGTACAGGGTAGACGGTACT  1076
      ||||||||||| || |||| || |||||||||||
seq2  GAAGCGATAGCTTAGGTACGGGTTAGACGGTACT  1081


seq1: chr14_100642155_100643284
seq2: B6Ng01-280H01.g_68_1214 (reverse)

seq1  GAGTAA-TACCTGTGGCAGGAAGT-CACTCCCTGTCTCTTTTCATCCC-T  47
      |||||| ||||||||||||||||| ||  |||||||||||||| |||| |
seq2  GAGTAATTACCTGTGGCAGGAAGTCCATCCCCTGTCTCTTTTCCTCCCAT  50

seq1  GAC--TCTCACAAATGGTTGCTGTTTATTAGCAGAAATTT-TTTTTTTTT  94
      |||  || ||||||||||||||| ||| |||||||| ||| |||||||| 
seq2  GACTTTCCCACAAATGGTTGCTG-TTAATAGCAGAAGTTTATTTTTTTTA  99

seq1  ACCTT-CTGGTAT--CA-CTGGAGTCACAACAAAAAAAAAAAAAAAAAAA  140
      ||||| |||||||  || |||||||| | || ||| | | ||||||| ||
seq2  ACCTTCCTGGTATTCCACCTGGAGTCCCCACCAAATATATAAAAAAATAA  149

seq1  AAAAAGAAG----AAGAAAGGAGAC-AGATG-TCTCTGCCTG-TCTCTTT  183
       || | | |    | |||||||||| ||||| |||||||||| |||||||
seq2  TAATATATGTTGTATGAAAGGAGACAAGATGTTCTCTGCCTGTTCTCTTT  199

seq1  TAATGACAACAGAATAAACATAATAAAAACCTGTATAGAGTGCCAGACAG  233
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAATGACAACAGAATAAACATAATAAAACCCTGTATAGAGTGCCAGACAG  249

seq1  GTGGAGTGTGGTTTTTGGCTTTGTAAGCGGCCATTCTGAGGCAAAAAATA  283
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  GTGGAGTGTGGTTTTGGCCTTTGTAAGCGGCCATTCTGAGGCAAAAAATA  299

seq1  GTTTAGTCAGTCGCTTCTGCGTCCAAATTCCACCTCTTTCCCCC-TTATG  332
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTTAGTCAGTCGCTTCTGCGTCCAAATTCCACCTCTTTCCCCCTTTATG  349

seq1  TAAGCTAGTTGAGCTTTTGAAACCATAGTTCACAATTTTTACAATGCACG  382
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGTTGAGC-TTTGAAACCATAGTTCACAATTTTTACAATGCACG  398

seq1  CTTTGGAGCTTCATGCATTCAAGTTTCTTGGGAGTGATAGTCGACTTTGT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGCTTCATGCATTCAAGTTTCTTGGGAGTGATAGTCGACTTTGT  448

seq1  GGGAAACTGTGGAAGTGTACATACAAATGCATGCAAAAATATTGCATTCT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTGTGGAAGTGTACATACAAATGCATGCAAAAATATTGCATTCT  498

seq1  AAACTACTTTTATCCCTATGCTCAAAGATGGGACAATGGTTTCAATAGAT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTTTTATCCCTATGCTCAAAGATGGGACAATGGTTTCAATAGAT  548

seq1  TTTATGAACTTCAATGAGTTCTCGATGAGTATAAAGTAAGTTTCGCTTTG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAACTTCAATGAGTTCTCGATGAGTATAAAGTAAGTTTCGCTTTG  598

seq1  CGTCTTCATCAGCAAGGGTTTACATGGAGACGGAGCACTCACCAAAGCTC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTCATCAGCAAGGGTTTACATGGAGACGGAGCACTCACCAAAGCTC  648

seq1  AGCCAAGTGTCCCTTCTACAAACTCTGCATGTGACCATTGAACCATGAGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTGTCCCTTCTACAAACTCTGCATGTGACCATTGAACCATGAGA  698

seq1  TGGGACAGTCTCATGTATTTCATCTTTCCTGCGACAGCCATTACCAACAC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGTCTCATGTATTTCATCTTTCCTGCGACAGCCATTACCAACAC  748

seq1  ATGCTACTAGAAATCTCAGAACAGCCGAATCACTCGCTCTTCAGAGCACC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTAGAAATCTCAGAACAGCCGAATCACTCGCTCTTCAGAGCACC  798

seq1  TTTGAATAAAGTGTGTGCTCCGAGCATGCTTAAAGAGTGTTCACTCTTTT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAAAGTGTGTGCTCCGAGCATGCTTAAAGAGTGTTCACTCTTTT  848

seq1  GTAATCCATTATTATAAAACCTGTGTAAGCTGTAGTGCTCCCTCGTCCTC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCATTATTATAAAACCTGTGTAAGCTGTAGTGCTCCCTCGTCCTC  898

seq1  AATCACAGATCTAGAAGCTTCAGACACACGCTGTTGAGATTTGCCTGTTG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGATCTAGAAGCTTCAGACACACGCTGTTGAGATTTGCCTGTTG  948

seq1  GCCTGACCCAAACATTCTATCTATTTATGTGTGTGTGTGTAAGTGCGTAT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCCAAACATTCTATCTATTTATGTGTGTGTGTGTAAGTGCGTAT  998

seq1  ATGAGTATGGGCATATGTGTGTTCATGTGGTATGTGCATGCGTGTGCAAA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATGGGCATATGTGTGTTCATGTGGTATGTGCATGCGTGTGCAAA  1048

seq1  TGTGTGCTTGGACACATACAGAGACTGGCAGGAGGTCCTCACTTGATCAC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTTGGACACATACAGAGACTGGCAGGAGGTCCTCACTTGATCAC  1098

seq1  TCTTCACCTCATGTTTTGAGGCAGGGGTTCT-CATTGAACCTGGAATTC  1130
      ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTTCACCTCATGTTTTGAGGCAGGGGTTCTACATTGAACCTGGAATTC  1147


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