BAC Information

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BAC

Clone NameB6Ng01-281D09
Chromosome14 (Build37)
Map Location 43,939,229 - 43,940,390
singlet/doubletsinglet
Overlap geneLOC666481
Upstream geneEG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471
Downstream geneLOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281D09.bB6Ng01-281D09.g
ACCGA080746GA080747
length1,1731,201
definitionB6Ng01-281D09.b B6Ng01-281D09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccatcattaaatcacaacatgagaagacaatgttggatatgga
aaaaataacacagtcaataaatgataccattgagaagtacaaggaattca
tagaagataaggattcctacaggtgagtcccagacacagctgagaccctg
cactaggcagggaatgcttgtgaccttctaagactgaacaaaagtaagag
ctctagttctataatatttgtttcttaataggagccctcccttgaggaaa
gggtcttggatttgtacctcttggactcagttttcctaagtgtgaagatt
gtccaagaccatcagtctttattcttccaaattcaggatcctctctatag
aaacaatttccaccatgctgggaatctcaagcaattctgacctctagggt
tctgacagcagattaaaagatctgggatccaggacaaaaatcaaaagagt
ttataccttttgggtctcctctcctccctcataggggatttgcactcttc
ctactgatggttttctggtaccacagacatataagcaaccaagaggtaca
tttcctcttctgtgatatacatgggacactcttagtgtcagggttttcag
aagtcctttgattcttgtggcatgtggctggtccctggatttgacctgcc
tctattttggactgatgggtatactgtggtctctagtctggggctatctg
gggatcaggacccttgcaggtatcatagtacttggaggagttgcaggcaa
acagaagcttgctgggaatcacctttttttgtttgtttgtttgtttgtgg
ttcagcttcatgcacacctacctcctgaaagaatgcaatcaattgaagga
aaaagtaaggatgttactgaatgagaacagaaagctgctggtagagcagg
ctgaccaggaggcatcctatggtgaagaaaacaggttctgtcatgagtcc
agcaagaacatacatcccaaatactaagcagtagcaggtaggatgatgtg
catcagaggcagattgccctcatggctaaccattaaaacattagacaaat
ccaatgtaacagtccaccaacttatcccaggcactcaaactgtttctcct
caagtgtttttattttagggtgaatcatctacaaggctttctgggtggag
ggttagctattcagaaactatat
gaattcctgatctttgaaagacttttatcatgaatgggtgttggatcttg
tcgaatgctttttccgcgtctaatgagatgatcatgtggtttttgtcttt
gagtttgtttctataatggattacattgatggatttttgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcaagaattttattgaggatttttgc
atcgatattcataaggaaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagttccctctacttctattttgtggaatagtttgtgcagaactag
gactagatcttctttgaaggtctggtagaactctgcactaaacccatctg
gccctgggctttttttggttgggagacaattaatgactgcttctatttcc
ttttgggatatgggactgtttagatcgttaacttgatcctggtttaactt
tggtacctggtatctgtctagaaacttctccatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtttcccttttcatttctgattttgttaat
taggatgttgtccctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcctttggttaattatttga
atagtttttcttgtttccacttggttgacttcgcccctgagtttgattat
ttcctgcagtctactcctcttgggtgaatttgctttcttttttttctaga
gcttttagatgtgttgtcaagctgctagtatgtgctctctcccgttttct
atttggaggcactcagagctatgagtttccctttttgaaatgcttttcat
tgtgtccataggttttgctctatgttggtggccttcattttccattaact
tctaaaagtccttttaattttccttcttattccctttcttgaacaaggta
tcattgagaaggagtggttggttcagttttccacctggaatggttgcctt
tctcaatagttgagtatgtttttgaagatacgacgctcagagcacatgtg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43939229_43940390
seq2: B6Ng01-281D09.b_46_1218

seq1  GAATTCACCATCATTAAATCACAACATGAGAAGACAATGTTGGATATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCATTAAATCACAACATGAGAAGACAATGTTGGATATGGA  50

seq1  AAAAATAACACAGTCAATAAATGATACCATTGAGAAGTACAAGGAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACACAGTCAATAAATGATACCATTGAGAAGTACAAGGAATTCA  100

seq1  TAGAAGATAAGGATTCCTACAGGTGAGTCCCAGACACAGCTGAGACCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATAAGGATTCCTACAGGTGAGTCCCAGACACAGCTGAGACCCTG  150

seq1  CACTAGGCAGGGAATGCTTGTGACCTTCTAAGACTGAACAAAAGTAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGCAGGGAATGCTTGTGACCTTCTAAGACTGAACAAAAGTAAGAG  200

seq1  CTCTAGTTCTATAATATTTGTTTCTTAATAGGAGCCCTCCCTTGAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTTCTATAATATTTGTTTCTTAATAGGAGCCCTCCCTTGAGGAAA  250

seq1  GGGTCTTGGATTTGTACCTCTTGGACTCAGTTTTCCTAAGTGTGAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGGATTTGTACCTCTTGGACTCAGTTTTCCTAAGTGTGAAGATT  300

seq1  GTCCAAGACCATCAGTCTTTATTCTTCCAAATTCAGGATCCTCTCTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGACCATCAGTCTTTATTCTTCCAAATTCAGGATCCTCTCTATAG  350

seq1  AAACAATTTCCACCATGCTGGGAATCTCAAGCAATTCTGACCTCTAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTCCACCATGCTGGGAATCTCAAGCAATTCTGACCTCTAGGGT  400

seq1  TCTGACAGCAGATTAAAAGATCTGGGATCCAGGACAAAAATCAAAAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGCAGATTAAAAGATCTGGGATCCAGGACAAAAATCAAAAGAGT  450

seq1  TTATACCTTTTGGGTCTCCTCTCCTCCCTCATAGGGGATTTGCACTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTTTTGGGTCTCCTCTCCTCCCTCATAGGGGATTTGCACTCTTC  500

seq1  CTACTGATGGTTTTCTGGTACCACAGACATATAAGCAACCAAGAGGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATGGTTTTCTGGTACCACAGACATATAAGCAACCAAGAGGTACA  550

seq1  TTTCCTCTTCTGTGATATACATGGGACACTCTTAGTGTCAGGGTTTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTCTGTGATATACATGGGACACTCTTAGTGTCAGGGTTTTCAG  600

seq1  AAGTCCTTTGATTCTTGTGGCATGTGGCTGGTCCCTGGATTTGACCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTTGATTCTTGTGGCATGTGGCTGGTCCCTGGATTTGACCTGCC  650

seq1  TCTATTTTGGACTGATGGGTATACTGTGGTCTCTAGTCTGGGGCTATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTGGACTGATGGGTATACTGTGGTCTCTAGTCTGGGGCTATCTG  700

seq1  GGGATCAGGACCCTTGCAGGTATCATAGTACTTGGAGGAGTTGCAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAGGACCCTTGCAGGTATCATAGTACTTGGAGGAGTTGCAGGCAA  750

seq1  ACAGAAGCTTGCTGGGAATCACCTTTTTTTGTTTGTTTGTTTGTTTGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCTTGCTGGGAATCACCTTTTTTTGTTTGTTTGTTTGTTTGTGG  800

seq1  TTCAGCTTCATGCACACCTACCTCCTGAAAGAATGCAATCAATTGAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTCATGCACACCTACCTCCTGAAAGAATGCAATCAATTGAAGGA  850

seq1  AAAAGTAAGGATGTTACTGAATGAGAACAGAAAGCTGCTGGTAGAGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAGGATGTTACTGAATGAGAACAGAAAGCTGCTGGTAGAGCAGG  900

seq1  CTGACCAGGAGGCATCCTATGGTGAAGAAAACAGGTTCTGTCATGAGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGGAGGCATCCTATGGTGAAGAAAACAGGTTCTGTCATGAGTCC  950

seq1  AGCAAGAACATACATCCCAAATACTAAGCAGTAGCAGGTAGGATGATGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAACATACATCCCAAATACTAAGCAGTAGCAGGTAGGATGATGTG  1000

seq1  CATCAGAGGCAGATTGCCCTCATGGCTAACCAT--AAACA-TAGAC-AAT  1046
      |||||||||||||||||||||||||||||||||  ||||| ||||| |||
seq2  CATCAGAGGCAGATTGCCCTCATGGCTAACCATTAAAACATTAGACAAAT  1050

seq1  CCAATGTAACAGTCCACCAACTTAT-CCAGGCACTC-AACTGTTTCTCCT  1094
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  CCAATGTAACAGTCCACCAACTTATCCCAGGCACTCAAACTGTTTCTCCT  1100

seq1  CCAAGTG--TTTATTT--AGGTG-ATCATCTACAAGGCTTTCT--GTGGA  1137
       ||||||  |||||||   |||| |||||||||||||||||||  |||||
seq2  -CAAGTGTTTTTATTTTAGGGTGAATCATCTACAAGGCTTTCTGGGTGGA  1149

seq1  GG--TAGCCTTTTTCAAGAAACTATAT  1162
      ||  ||||  | ||| |||||||||||
seq2  GGGTTAGC--TATTC-AGAAACTATAT  1173