BAC Information

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BAC

Clone NameB6Ng01-282G06
Chromosome14 (Build37)
Map Location 42,990,834 - 42,991,974
singlet/doubletsinglet
Overlap geneLOC100040771
Upstream geneSftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759
Downstream geneEG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282G06.bB6Ng01-282G06.g
ACCGA081622GA081623
length1,1291,149
definitionB6Ng01-282G06.b B6Ng01-282G06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggaagacagatattagagaagtgatggccaggagtctacgatg
cagtaatttgtacagtccaggttgacctttgctaagcactatgaacttca
ggttttcttgacataacatatgacatgagctggaaatgttccccaaacct
ttatgtctgaggcagcttttggatttcagggcaagggggaatgctataag
aactgtggtggtagttgggaccaacagtggtggttgggaagaggaatata
gcttagcagaccagctcgaaaaaagcctttctgctttttcagcgattaat
cctgtctctagcttttctcttcctcaaccttttctttgggactcagaatg
gtctcccctgccctgggccatcaactatggaaatgcatttgtgtttatct
atcttcagtgtctgctgggagaacatcatcccaaagttgcaacatcacta
atcatatgaagaatatgaataaactagaagatatgaaattttatatcagg
aagataaatgctgagtgggaagaactttttcgaatcttggacattgacat
gaatactgatttgaactataggtaaaattatgccctgtatcctgttgact
gtattgtgccctctctgttgacccacattttctcccatgaatggagtgtg
tcatctctcacattcattataagaagtcttgacagttatttaattgttgg
atgagataagtgctgtgtgttctatggtcatcctcttttgtacttgccct
tgacgtgcttggagtctgattggttctgtcaacagctggaaggacctggt
cacaatagctgccttactgtgtaagaatgcaatgtctgcaggccattact
gctttactcttgttttattcattgtactctgagtctatggaacctacctg
ggatttatttgtcattttaatttttttttctgtgtgtgaagttagttgtg
tgtgttttgttcagatctggggatgtggggtcctttcgatgggttctgag
atttgtgtgatggacagtttgtaggcatgatagtgttgagcctaagtcca
attgatcatcagtctgattcctgttataactggggtcacaataggatcct
ctgagtagaagtgtgtataaagccttttc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatcttcacaatg
gagtactactcaactattaaaaagaatgaatttatgaaatttctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggatactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaaggctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggagagctagagaaagtaccaagagcttaaagggatctgcaacctata
gttggaacacatatgactaaccagtaccggagctctgactctagctgcat
atgtatcaagatgcttagtcgcattcactgaagaagtcatggacacgcaa
ctttatgctagtacggtaactcaagcaaatggggatgtgttgctatacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42990834_42991974
seq2: B6Ng01-282G06.b_47_1175

seq1  GAATTCAGGAAGACAGATATTAGAGAAGTGATGGCCAGGAGTCTACGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAGACAGATATTAGAGAAGTGATGGCCAGGAGTCTACGATG  50

seq1  CAGTAATTTGTACAGTCCAGGTTGACCTTTGCTAAGCACTATGAACTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTTGTACAGTCCAGGTTGACCTTTGCTAAGCACTATGAACTTCA  100

seq1  GGTTTTCTTGACATAACATATGACATGAGCTGGAAATGTTCCCCAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTTGACATAACATATGACATGAGCTGGAAATGTTCCCCAAACCT  150

seq1  TTATGTCTGAGGCAGCTTTTGGATTTCAGGGCAAGGGGGAATGCTATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTGAGGCAGCTTTTGGATTTCAGGGCAAGGGGGAATGCTATAAG  200

seq1  AACTGTGGTGGTAGTTGGGACCAACAGTGGTGGTTGGGAAGAGGAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGTGGTAGTTGGGACCAACAGTGGTGGTTGGGAAGAGGAATATA  250

seq1  GCTTAGCAGACCAGCTCGAAAAAAGCCTTTCTGCTTTTTCAGCGATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCAGACCAGCTCGAAAAAAGCCTTTCTGCTTTTTCAGCGATTAAT  300

seq1  CCTGTCTCTAGCTTTTCTCTTCCTCAACCTTTTCTTTGGGACTCAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTAGCTTTTCTCTTCCTCAACCTTTTCTTTGGGACTCAGAATG  350

seq1  GTCTCCCCTGCCCTGGGCCATCAACTATGGAAATGCATTTGTGTTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCCTGCCCTGGGCCATCAACTATGGAAATGCATTTGTGTTTATCT  400

seq1  ATCTTCAGTGTCTGCTGGGAGAACATCATCCCAAAGTTGCAACATCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGTGTCTGCTGGGAGAACATCATCCCAAAGTTGCAACATCACTA  450

seq1  ATCATATGAAGAATATGAATAAACTAGAAGATATGAAATTTTATATCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGAAGAATATGAATAAACTAGAAGATATGAAATTTTATATCAGG  500

seq1  AAGATAAATGCTGAGTGGGAAGAACTTTTTCGAATCTTGGACATTGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAATGCTGAGTGGGAAGAACTTTTTCGAATCTTGGACATTGACAT  550

seq1  GAATACTGATTTGAACTATAGGTAAAATTATGCCCTGTATCCTGTTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGATTTGAACTATAGGTAAAATTATGCCCTGTATCCTGTTGACT  600

seq1  GTATTGTGCCCTCTCTGTTGACCCACATTTTCTCCCATGAATGGAGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTGCCCTCTCTGTTGACCCACATTTTCTCCCATGAATGGAGTGTG  650

seq1  TCATCTCTCACATTCATTATAAGAAGTCTTGACAGTTATTTAATTGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTCACATTCATTATAAGAAGTCTTGACAGTTATTTAATTGTTGG  700

seq1  ATGAGATAAGTGCTGTGTGTTCTATGGTCATCCTCTTTTGTACTTGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATAAGTGCTGTGTGTTCTATGGTCATCCTCTTTTGTACTTGCCCT  750

seq1  TGACGTGCTTGGAGTCTGATTGGTTCTGTCAACAGCTGGAAGGACCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTGCTTGGAGTCTGATTGGTTCTGTCAACAGCTGGAAGGACCTGGT  800

seq1  CACAATAGCTGCCTTACTGTGTAAGAATGCAATGTCTGCAGGCCATTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGCTGCCTTACTGTGTAAGAATGCAATGTCTGCAGGCCATTACT  850

seq1  GCTTTACTCTTGTTTTATTCATTGTACTCTGAGTCTATGGAACCTACCT-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTTTACTCTTGTTTTATTCATTGTACTCTGAGTCTATGGAACCTACCTG  900

seq1  GGATTTATTTGTCATTTTAA-TTTTTTTTCTGTGTGTGAAGTTAGTTGTG  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGATTTATTTGTCATTTTAATTTTTTTTTCTGTGTGTGAAGTTAGTTGTG  950

seq1  TGTGTTTTGTTCAGGATCTGGGGTTGT-GGGTCC-TTCGATGGGTTCTGA  996
      ||||||||||||| ||||||||| ||| |||||| |||||||||||||||
seq2  TGTGTTTTGTTCA-GATCTGGGGATGTGGGGTCCTTTCGATGGGTTCTGA  999

seq1  GGATTTGTGTGATGGACAGTTTGTAGGGCATGATAGTGTTGAGCCCTTAG  1046
       |||||||||||||||||||||||| |||||||||||||||||||  || 
seq2  -GATTTGTGTGATGGACAGTTTGTA-GGCATGATAGTGTTGAGCC--TA-  1044

seq1  AGGCCCAAATTGATCATCAGGGTTCTTTATTCCCTGTGTTTAACTTGGTG  1096
      || ||  |||||||||||||   || | ||| ||||| | |||| ||| |
seq2  AGTCC--AATTGATCATCAG---TC-TGATT-CCTGT-TATAAC-TGGGG  1085

seq1  TCAC-ATAGGATTCTCCTGGAGTAGGAAGTGT-TATAAAGCCTTTTC  1141
      |||| ||||||| |||   ||||| ||||||| ||||||||||||||
seq2  TCACAATAGGATCCTC--TGAGTA-GAAGTGTGTATAAAGCCTTTTC  1129