BAC Information

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BAC

Clone NameB6Ng01-282G18
Chromosome14 (Build37)
Map Location 53,541,868 - 53,543,016
singlet/doubletsinglet
Overlap genenone
Upstream geneRnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850
Downstream geneLOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282G18.bB6Ng01-282G18.g
ACCGA081642GA081643
length1,1741,158
definitionB6Ng01-282G18.b B6Ng01-282G18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagcccaccttcttgagttctttacatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtagtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcaacttta
tgaggtcccatatatcgattctcgttcttacagcacaagccattgctgtt
ctattcaggaattttacccataacttcgaggcttttccctactttctcct
ctataagtttcagtgtctctggttttatgtggagttccttaatccacata
gatttgaccttagtacaaggagataggaatggatcaattcgcattcttct
acatgataaccaccagttgtgccagcatcatttgttgaaaatgctgtctt
ttttccactgggtggttttagctcccttgtcaaagatgaagtgaccatag
gtgtgtgggttcatctctgggtcttcaattctgttccattggtctacgtg
tctgtcactataccagtaccatgcagtttttatcacagttgctctgtagt
acagctttaggtcaggcatggtgattaaaccagaggttcttttatccttg
agaagagtttttgctatcctgggttttttgttattccagatgaatttgca
gattgccctttctaattcgttgaagagttgagttggaattttgatgggga
ttgcattgaatctgtagattgcttttggcaagatagctatttttgctata
ttgatccggccaatccgtgagcatgggagatcttttcatcttctgagatc
ttctttattttctttcttcagagacatgaagttcttatcatacagatctt
tcacttcctttagttagagtcatgccaaggtattttatattatttgtgac
tattataaagggtgttgtttccctatttcatttctcagcctgtttaatcc
tttgtgtacagaaaggccattgacttgttgagttgtctttttgatgactt
tgggttggaagtgacttattatagatattagaatggctactcagcttgtt
ctcattaccattgccttgcaatgattcaagcctttacatatcttgagagg
gatagtatggtcctcataccgtct
catgcacagagacattaataattcattatttttcttattaaaaatgttta
tattaatgataaacatcctgagaaagaaattaggaaaacaacatccttca
caatagccacaaataatgtaaaatatctcgatgtaactttaactaagcaa
gaaaaagacatgtatgacaagaacttcaaatatttggagcaagaaattaa
agaagataaaatgtagtggattggtctgatgctgattgtattctaatgct
aaacactggttcttcaagatgtggttttctgggattcgcagatcctcatg
tcctcaaagtgatgccatgtgaaacttctcgccaatttaactggtcaata
aaaggttagagcctgtgattgggcagtggtgagagaaaggtaggactgga
ggaccaagtgggggagcagttgccagtagagagaggagaaagaagagaaa
agaagaagaagctgcaatggactagaacagcatggccagaagaaacagca
agtaacaaggggcttatacctgggaaataagttagtatagtcctagaatt
gcccaatttagtctgatggcttgtaactaaaataactgtattgtttgtct
tttatatgggcttgttaggattataaattctttctacaataccagaagac
agaaagacctcccataatcatggaccagtaggattagcatactaaaaatg
gcaaccccaagctgggatttattaatatgacaatactgtgtgtgtgcatg
catgtgcatgtttagccacccatgtgtgcatattcatgtggagataagag
gtcaatcttgggtgtcatttttctgaagttatctaccttgtttattttag
acaagctctctcactgatacatggagtttattgttaggctaggatggcta
catggcatctcctcaaatgcatttctgaaccagctagaaaaatctctctt
actttttttttaattctgagtattcattcctcccaaggctgtatgcacag
aagtaaaatatcttcttgtacattgttccaccaatgagggagaagaaact
aaaattctgtactgcaggccagtgagcctccaaatgtgcctagcacttat
gactctttgcttatatttcagcaggacctggaaaactatcgtaaagaaga
atcttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53541868_53543016
seq2: B6Ng01-282G18.g_80_1237 (reverse)

seq1  TATATAGATTCTTTTTTCCTA-AGGTTTTCACGTCCTGCTGAAATATAGG  49
      |||| |||||||| ||| | | || ||| || |||||||||||||||| |
seq2  TATA-AGATTCTTCTTTACGATAGTTTTCCAGGTCCTGCTGAAATATAAG  49

seq1  C-AAGAGTCAT-AGTGCTA-GCACATTTG--AGCTCACT-GCCTGCAGTA  93
      | ||||||||| ||||||| |||||||||   ||||||| ||||||||||
seq2  CAAAGAGTCATAAGTGCTAGGCACATTTGGAGGCTCACTGGCCTGCAGTA  99

seq1  CAGAATTTTAGTTTCTTCTCCCTCAATTGGTG--ACAATTGTACAAGAAG  141
      |||||||||||||||||||||||| |||||||  |||| |||||||||||
seq2  CAGAATTTTAGTTTCTTCTCCCTC-ATTGGTGGAACAA-TGTACAAGAAG  147

seq1  ATATTTTACTTCTGTGCATACAGCC-TAGGAGG-ATGAATACTCAGAATT  189
      ||||||||||||||||||||||||| | ||||| ||||||||||||||||
seq2  ATATTTTACTTCTGTGCATACAGCCTTGGGAGGAATGAATACTCAGAATT  197

seq1  AAAAAAAAAGTAAGAGAGA-TTTTCTAGCTGGTTCAGAAATGCATTTGAG  238
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTAAGAGAGATTTTTCTAGCTGGTTCAGAAATGCATTTGAG  247

seq1  GAGATGCCATGTAGCCATCCTAGCCTAACAATAAACTCCATGTATCAGTG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCCATGTAGCCATCCTAGCCTAACAATAAACTCCATGTATCAGTG  297

seq1  AGAGAGCTTGTCTAAAATAAACAAGGTAGATAACTTCAGAAAAATGACAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTTGTCTAAAATAAACAAGGTAGATAACTTCAGAAAAATGACAC  347

seq1  CCAAGATTGACCTCTTATCTCCACATGAATATGCACACATGGGTGGCTAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTGACCTCTTATCTCCACATGAATATGCACACATGGGTGGCTAA  397

seq1  ACATGCACATGCATGCACACACACAGTATTGTCATATTAATAAATCCCAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACATGCATGCACACACACAGTATTGTCATATTAATAAATCCCAG  447

seq1  CTTGGGGTTGCCATTTTTAGTATGCTAATCCTACTGGTCCATGATTATGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTTGCCATTTTTAGTATGCTAATCCTACTGGTCCATGATTATGG  497

seq1  GAGGTCTTTCTGTCTTCTGGTATTGTAGAAAGAATTTATAATCCTAACAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTTCTGTCTTCTGGTATTGTAGAAAGAATTTATAATCCTAACAA  547

seq1  GCCCATATAAAAGACAAACAATACAGTTATTTTAGTTACAAGCCATCAGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATATAAAAGACAAACAATACAGTTATTTTAGTTACAAGCCATCAGA  597

seq1  CTAAATTGGGCAATTCTAGGACTATACTAACTTATTTCCCAGGTATAAGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTGGGCAATTCTAGGACTATACTAACTTATTTCCCAGGTATAAGC  647

seq1  CCCTTGTTACTTGCTGTTTCTTCTGGCCATGCTGTTCTAGTCCATTGCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTACTTGCTGTTTCTTCTGGCCATGCTGTTCTAGTCCATTGCAG  697

seq1  CTTCTTCTTCTTTTCTCTTCTTTCTCCTCTCTCTACTGGCAACTGCTCCC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTTTCTCTTCTTTCTCCTCTCTCTACTGGCAACTGCTCCC  747

seq1  CCACTTGGTCCTCCAGTCCTACCTTTCTCTCACCACTGCCCAATCACAGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGTCCTCCAGTCCTACCTTTCTCTCACCACTGCCCAATCACAGG  797

seq1  CTCTAACCTTTTATTGACCAGTTAAATTGGCGAGAAGTTTCACATGGCAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACCTTTTATTGACCAGTTAAATTGGCGAGAAGTTTCACATGGCAT  847

seq1  CACTTTGAGGACATGAGGATCTGCGAATCCCAGAAAACCACATCTTGAAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGAGGACATGAGGATCTGCGAATCCCAGAAAACCACATCTTGAAG  897

seq1  AACCAGTGTTTAGCATTAGAATACAATCAGCATCAGACCAATCCACTACA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGTTTAGCATTAGAATACAATCAGCATCAGACCAATCCACTACA  947

seq1  TTTTATCTTCTTTAATTTCTTGCTCCAAATATTTGAAGTTCTTGTCATAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTCTTTAATTTCTTGCTCCAAATATTTGAAGTTCTTGTCATAC  997

seq1  ATGTCTTTTTCTTGCTTAGTTAAAGTTACATCGAGATATTTTACATTATT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTTTCTTGCTTAGTTAAAGTTACATCGAGATATTTTACATTATT  1047

seq1  TGTGGCTATTGTGAAGGATGTTGTTTTCCTAATTTCTTTCTCAGGATGTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTATTGTGAAGGATGTTGTTTTCCTAATTTCTTTCTCAGGATGTT  1097

seq1  TATCATTAATATAAACATTTTTAATAAGAAAAATAATGAATTATTAATGT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTAATATAAACATTTTTAATAAGAAAAATAATGAATTATTAATGT  1147

seq1  CTCTGTGCATG  1149
      |||||||||||
seq2  CTCTGTGCATG  1158