BAC Information

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BAC

Clone NameB6Ng01-282M07
Chromosome14 (Build37)
Map Location 111,126,507 - 111,274,437
singlet/doubletdoublet
Overlap geneSlitrk6, EG668772
Upstream genenone
Downstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282M07.bB6Ng01-282M07.g
ACCGA081899GA081900
length1,1011,141
definitionB6Ng01-282M07.b B6Ng01-282M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,126,507 - 111,127,609)(111,273,299 - 111,274,437)
sequence
gaattctccttgcatacatcatgcaattcctattttacaatttaaaatta
taaatattccttcccccccccaaaaaaaaagtggctggatatattcacaa
catattttataggagaataattcctgtttaggttaaagtttaggtgttag
caccttaccatgcaaacatgagtacctgaatatgagtgtatagagttaga
tgggagatagttataagagaatcctcaaaaaagtaagactggatagcctt
cattcagagtcacaaaaacaagaaactgtacaaataaaatggaaagcgat
gatctactggaattgtgttttaatgtccacatgtgtattaagacacatgt
atgcagtctcctatatcatacatagcagaagcacatagtcacatagatat
taaataacaattagtttgtaaatgtttgtaagataacacacaagtttaat
attattttcattccatgtcttttatttttaagcatcattctagctaaaac
attgagaggacgtcatacaaaagtgaatgggcatgttataaccagttaag
acttttgtgtttgtttttaatatgataagatgaaccgaaattaaaactga
gaaaatggattgacttaatataatgatgctattgtgaaaataatgaaaga
tagatggcttttagcgaaacagatgacttaaaatttttgtgataatactt
aaagtgaaattatattttcactttcaatcatagtttttaaatttatattt
gaaaatctctgaacctcctagtacaagagaagaattcttgatttctatct
ccatttaacctaaggtctttgtatgagttgaacagaacactttattgccc
ttttattttttttttgagtttttttttttatagattttagaatttacttg
ctttatcatggcaataacgaataagaaaagaagcacacgcaaaagccctc
cactgtctgctgtcgacatgccctctagatctaatgctctgctagatcct
ccaattacccctacaggtatttgttccatttaagattttcaaataagacc
gaaacggaattgttttttaaaaaaaagtggccaagaagttggaatctaaa
a
gaattcttgaatgcatgaaggggctggttctacagattcaaaaccctatg
acgtagggcagtaacagtatatctgagaggagtcccagtgagtgtcgata
gagtacccaaagtcagaggcctcataccagatcatcaagtcattgcaatg
aacatttgcaatctaagaagtgtggaccaatgtgtacatttaagggaaca
ccgtgatgcactataggttctataatgagatttttctccattggggagga
agtttgcacagaggagagtgagtatggcaggaaggggaaatgagtagaat
tgggggctcatgatgtgaaagctacaaggaaccaataaaatgtttttaaa
aaggaaaacattgtttcaatatatttaatgtttttaaaattagtgatagc
attgtagcagtatataatataaaatagtcatttaaattgtgttagtagta
ctgcaaatattgtttataataattttattcatcagaattaatcgtatgtt
gtctaagttcattgaaaaattttaaacatgttattatttgtttttctcat
tttaatattgtgttcctgtaaacaatgtatcactgcaatgtacactttgg
actcactactaaaatttctccaagatgtccctaacataaaaagaaaatct
ctaaatgtagatatactcgctatattgtgattatgttatttataacctga
atctgtaagtgtgttaatcagccaggaatttaatgcaaaaagtttagaat
cttcctttcttgaacacagaagattcttaagtccctgtagaaagtggact
gcttcctacatttttaaaagtatgacactgctccccaccaccacaataca
ctgagtaatgggcatccagagagagagtactatttgacctacattgtcta
ctgcggttcctacagaacatgacttgtcctgcaataacagtagacttggg
aaaaggcaatctaatagccagccccttaaatagttcctcagccagaatag
tgatatagttatgagatgtaagacaaatagagtaatggtgctatttatat
ggttcatctggatagcatacctggttctaagcaactctgatttgtggtaa
agtcgtgaatactgctaaatccatagcgaagggaaatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111126507_111127609
seq2: B6Ng01-282M07.b_45_1145

seq1  GAATTCTCCTTGCATACATCATGCAATTCCTATTTTACAATTTAAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTGCATACATCATGCAATTCCTATTTTACAATTTAAAATTA  50

seq1  TAAATATTCCTTCCCCCCCCCAAAAAAAAAGTGGCTGGATATATTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTCCTTCCCCCCCCCAAAAAAAAAGTGGCTGGATATATTCACAA  100

seq1  CATATTTTATAGGAGAATAATTCCTGTTTAGGTTAAAGTTTAGGTGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTATAGGAGAATAATTCCTGTTTAGGTTAAAGTTTAGGTGTTAG  150

seq1  CACCTTACCATGCAAACATGAGTACCTGAATATGAGTGTATAGAGTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTACCATGCAAACATGAGTACCTGAATATGAGTGTATAGAGTTAGA  200

seq1  TGGGAGATAGTTATAAGAGAATCCTCAAAAAAGTAAGACTGGATAGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATAGTTATAAGAGAATCCTCAAAAAAGTAAGACTGGATAGCCTT  250

seq1  CATTCAGAGTCACAAAAACAAGAAACTGTACAAATAAAATGGAAAGCGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGAGTCACAAAAACAAGAAACTGTACAAATAAAATGGAAAGCGAT  300

seq1  GATCTACTGGAATTGTGTTTTAATGTCCACATGTGTATTAAGACACATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACTGGAATTGTGTTTTAATGTCCACATGTGTATTAAGACACATGT  350

seq1  ATGCAGTCTCCTATATCATACATAGCAGAAGCACATAGTCACATAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCTCCTATATCATACATAGCAGAAGCACATAGTCACATAGATAT  400

seq1  TAAATAACAATTAGTTTGTAAATGTTTGTAAGATAACACACAAGTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACAATTAGTTTGTAAATGTTTGTAAGATAACACACAAGTTTAAT  450

seq1  ATTATTTTCATTCCATGTCTTTTATTTTTAAGCATCATTCTAGCTAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCATTCCATGTCTTTTATTTTTAAGCATCATTCTAGCTAAAAC  500

seq1  ATTGAGAGGACGTCATACAAAAGTGAATGGGCATGTTATAACCAGTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGGACGTCATACAAAAGTGAATGGGCATGTTATAACCAGTTAAG  550

seq1  ACTTTTGTGTTTGTTTTTAATATGATAAGATGAACCGAAATTAAAACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGTTTGTTTTTAATATGATAAGATGAACCGAAATTAAAACTGA  600

seq1  GAAAATGGATTGACTTAATATAATGATGCTATTGTGAAAATAATGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGATTGACTTAATATAATGATGCTATTGTGAAAATAATGAAAGA  650

seq1  TAGATGGCTTTTAGCGAAACAGATGACTTAAAATTTTTGTGATAATACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGCTTTTAGCGAAACAGATGACTTAAAATTTTTGTGATAATACTT  700

seq1  AAAGTGAAATTATATTTTCACTTTCAATCATAGTTTTTAAATTTATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAATTATATTTTCACTTTCAATCATAGTTTTTAAATTTATATTT  750

seq1  GAAAATCTCTGAACCTCCTAGTACAAGAGAAGAATTCTTGATTTCTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTCTGAACCTCCTAGTACAAGAGAAGAATTCTTGATTTCTATCT  800

seq1  CCATTTAACCTAAGGTCTTTGTATGAGTTGAACAGAACACTTTATTGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAACCTAAGGTCTTTGTATGAGTTGAACAGAACACTTTATTGCCC  850

seq1  TTTTATTTTTTTTTTGAG-TTTTTTTTTTATAGATTTTAGAATTTACTTG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTTTTTGAGTTTTTTTTTTTATAGATTTTAGAATTTACTTG  900

seq1  CTTTATCATGGCAATAACGAATAAGAAAAGAAGCACACGCAAAAG-CCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTATCATGGCAATAACGAATAAGAAAAGAAGCACACGCAAAAGCCCTC  950

seq1  CACTGTCTGCTGTCGACATG-CCTCTAGATCTAATGCTCTGCTAGAATCC  997
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  CACTGTCTGCTGTCGACATGCCCTCTAGATCTAATGCTCTGCTAG-ATCC  999

seq1  TCCAATTACCCTAACAAGTATTTGTTTTCCATTTAAGATTTTCAAATAAG  1047
      |||||||||||  ||| |||||||  ||||||||||||||||||||||||
seq2  TCCAATTACCCCTACAGGTATTTG--TTCCATTTAAGATTTTCAAATAAG  1047

seq1  ACCCGAAACAGAATGTTTTTCCACAAAAAAAGTGGCACAAG-AGTTTGAA  1096
      | ||||||| ||||  ||||  | |||||||||||| |||| |||| |||
seq2  A-CCGAAACGGAATTGTTTTTTA-AAAAAAAGTGGC-CAAGAAGTTGGAA  1094

seq1  TCTAAAA  1103
      |||||||
seq2  TCTAAAA  1101

seq1: chr14_111273299_111274437
seq2: B6Ng01-282M07.g_70_1210 (reverse)

seq1  ATACATTTTCCTCTCTCTATGTATTT-GCAGTATTCACGACTTTCCAACC  49
      |||||||| ||| || ||||| |||| ||||||||||||||||| | || 
seq2  ATACATTTCCCT-TCGCTATGGATTTAGCAGTATTCACGACTTTACCACA  49

seq1  AAT-AGAGTTGCTTAGAACCAGTTATTGCTATCAGAATGAACCATATAAA  98
      ||| |||||||||||||||||| || |||||||   ||||||||||||||
seq2  AATCAGAGTTGCTTAGAACCAGGTA-TGCTATCCAGATGAACCATATAAA  98

seq1  TAGCACATTTACTCTATTTGTCTTACATTCTCATAACTATATCACTA-TC  147
      ||||||  ||||||||||||||||||| ||||||||||||||||||| ||
seq2  TAGCACCATTACTCTATTTGTCTTACA-TCTCATAACTATATCACTATTC  147

seq1  TGGCTGAGGAAACTATTTAAGGGGCTGGCTATTAGATTGCCTTTTCCCAA  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGG-AACTATTTAAGGGGCTGGCTATTAGATTGCCTTTTCCCAA  196

seq1  GTCTACTGTTATTGCAGGACAAGTCATGTTCTGTAGGAACCGCAGTAGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTGTTATTGCAGGACAAGTCATGTTCTGTAGGAACCGCAGTAGAC  246

seq1  AATGTAGGTCCAATAGTACTCTCTCTCTGGATG-CCATTACTCAGTGTAT  296
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  AATGTAGGTCAAATAGTACTCTCTCTCTGGATGCCCATTACTCAGTGTAT  296

seq1  TGTGGTGGTGGGGAGCAGTGTCATACTTTT-AAAATGTAGGAAGCAGTCC  345
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGGTGGTGGGGAGCAGTGTCATACTTTTAAAAATGTAGGAAGCAGTCC  346

seq1  AC-TTCTACAGGGACTTAAGAATCTTCTGTGTTCAAGAAAGGAAGATTCT  394
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTACAGGGACTTAAGAATCTTCTGTGTTCAAGAAAGGAAGATTCT  396

seq1  AAACTTTTTGCATTAAATTCCTGGCTGATTAACACACTTACAGATTCAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTGCATTAAATTCCTGGCTGATTAACACACTTACAGATTCAGG  446

seq1  TTATAAATAACATAATCACAATATAGCGAGTATATCTACATTTAGAGATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATAACATAATCACAATATAGCGAGTATATCTACATTTAGAGATT  496

seq1  TTCTTTTTATGTTAGGGACATCTTGGAGAAATTTTAGTAGTGAGTCCAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTATGTTAGGGACATCTTGGAGAAATTTTAGTAGTGAGTCCAAA  546

seq1  GTGTACATTGCAGTGATACATTGTTTACAGGAACACAATATTAAAATGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATTGCAGTGATACATTGTTTACAGGAACACAATATTAAAATGAG  596

seq1  AAAAACAAATAATAACATGTTTAAAATTTTTCAATGAACTTAGACAACAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAATAATAACATGTTTAAAATTTTTCAATGAACTTAGACAACAT  646

seq1  ACGATTAATTCTGATGAATAAAATTATTATAAACAATATTTGCAGTACTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTAATTCTGATGAATAAAATTATTATAAACAATATTTGCAGTACTA  696

seq1  CTAACACAATTTAAATGACTATTTTATATTATATACTGCTACAATGCTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACAATTTAAATGACTATTTTATATTATATACTGCTACAATGCTAT  746

seq1  CACTAATTTTAAAAACATTAAATATATTGAAACAATGTTTTCCTTTTTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATTTTAAAAACATTAAATATATTGAAACAATGTTTTCCTTTTTAA  796

seq1  AAACATTTTATTGGTTCCTTGTAGCTTTCACATCATGAGCCCCCAATTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTATTGGTTCCTTGTAGCTTTCACATCATGAGCCCCCAATTCT  846

seq1  ACTCATTTCCCCTTCCTGCCATACTCACTCTCCTCTGTGCAAACTTCCTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTCCCCTTCCTGCCATACTCACTCTCCTCTGTGCAAACTTCCTC  896

seq1  CCCAATGGAGAAAAATCTCATTATAGAACCTATAGTGCATCACGGTGTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGAGAAAAATCTCATTATAGAACCTATAGTGCATCACGGTGTTC  946

seq1  CCTTAAATGTACACATTGGTCCACACTTCTTAGATTGCAAATGTTCATTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATGTACACATTGGTCCACACTTCTTAGATTGCAAATGTTCATTG  996

seq1  CAATGACTTGATGATCTGGTATGAGGCCTCTGACTTTGGGTACTCTATCG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTTGATGATCTGGTATGAGGCCTCTGACTTTGGGTACTCTATCG  1046

seq1  ACACTCACTGGGACTCCTCTCAGATATACTGTTACTGCCCTACGTCATAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACTGGGACTCCTCTCAGATATACTGTTACTGCCCTACGTCATAG  1096

seq1  GGTTTTGAATCTGTAGAACCAGCCCCTTCATGCATTCAAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGAATCTGTAGAACCAGCCCCTTCATGCATTCAAGAATTC  1141