BAC Information

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BAC

Clone NameB6Ng01-282O09
Chromosome14 (Build37)6 (Build37)
Map Location 109,111,483 - 109,112,65868,901,814 - 68,902,171
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757, EG668761
Downstream geneSlitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282O09.bB6Ng01-282O09.g
ACCGA081992GA081993
length1,178748
definitionB6Ng01-282O09.b B6Ng01-282O09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,111,483 - 109,112,658)(68,901,814 - 68,902,171)
sequence
gaattctacacaggatatgagggagttctgagtttggaacccacagtttt
agagaatccaatattttattctggcctccaagaatagtaggggcttaaac
aggcatatgttataaatgaaaaacacatatacacacaaaatgatatcaat
aacaaagatatttccaagaaagaagaatgggaagtactactagaggcagc
cattttatttatttctcactgaataaagagaccctagtgtatacctgatt
atctatgaccaagctaacagtgatgcagaaaggtcattctatctcccact
caccatatttgtgttttgtgaaacattttccattgctttgattcactttt
attatagaaaatataacataacaaaaaatattcatgagaaaactaactga
aaaccttattactccaaatgagtcaccatttcacgacaatatggtataac
caattgtcatgcaaaagtgttatagataattctaagacaacagtgtagga
tccaaaagccaatttagtaagctgagccatataattcaaaatgcctggtg
ttcattagacactttaactcaacccaatccaacagcaataatcaaatcct
tccaaatactctaaaggtttatatgaattatttttaccataataggtgat
atatgcttaatatacaatttaagcagtacaaaatgatattaaggtttttc
ctcaccaacccaattcaattgcaaagtcttcattccagagaggctccata
acaggtgcatcactaaatatcccctatgaaagtgtatatgctttctgata
tgtggcagatacatgctaatatacaggtgacaccagaatgttcttcctca
gcaccttcatggctttcattcatgacacactagagacattaactcataac
aacaaacagactgaaaatatctggctgactgattactgacctgttgcact
attgggaattaaaagactttcaaacaatgtctcttcttcgatcatacagc
agaaaaagtgtgtcataaaaaataacacactccgcaccacgtgttttctg
ctctcagtgtcttctgcatcgatcaatgccatatgatttcatcttaaata
ttaaattgtctacaggagagccatggacaaaattaatatcctctcaccag
tgtttccgaaaaggattttggttaagcc

gaattcctttttttttacactttttttaattaggtattttcctcatttac
atttccaatgctatcccaaaagttccccccccccacacacacacacacac
tttttggtcctggtgttcccctgtactggggcatataaagttgtgagact
atgccgggcctagcaaacacagaagtggatgctcacagtcagctattgga
tggatcacagggcccccaatggaggagctagagaaagtactcaaggagct
aaagggatctgtaaccctataggtggaacaacattacaactaaccagtac
cccagagctcttgattctagctgcatatgtatcaaaagatggcctagtct
gccatcactggaaagagaggcccattggacttgcaaaatttataaaattc
ttggacaaatggatggatctggaggatatcatccttagtgaggtaaccca
aacacaaaagaagtcacttgatatgtactcactgataagtggaaattagc
ccagaaacttagaatacccaagatacaatttgcaaaacacaagaaaatca
aaaagaactaagaacaaagtgtggatacttcattcctccttagaataggg
aataaaacacccattggaaggagttacaaagacaaagtttggaggtaaga
tgaaaggatgcaccatccagagactacccaacccaggggtccatcccata
atcagtcaccaaacccagacactactgcatatgccagcaagattttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109111483_109112658
seq2: B6Ng01-282O09.b_47_1224 (reverse)

seq1  GGCTTAACCAAAATCCTTTTAGAAACAACTGGTGAGAG--TATTAA-TTT  47
      |||||||||||||||||||| | ||  |||||||||||  |||||| |||
seq2  GGCTTAACCAAAATCCTTTTCGGAAACACTGGTGAGAGGATATTAATTTT  50

seq1  GT-CATGGCTCT-CTGTAGACAAATTTAATATGTAAAGATTAAAATTCAT  95
      || ||||||||| |||||||| |||||||||| | ||||| |||  ||||
seq2  GTCCATGGCTCTCCTGTAGAC-AATTTAATAT-TTAAGATGAAA--TCAT  96

seq1  ATGGCATTTGATTCGATGCAG-AGACACTGAGAGCAG-AAACACGT-GTG  142
      |||||| |||| ||||||||| ||||||||||||||| |||||||| |||
seq2  ATGGCA-TTGA-TCGATGCAGAAGACACTGAGAGCAGAAAACACGTGGTG  144

seq1  CGGAGTGTGTTAATTTTTATGACACAC-TTTTCTGCTGTATGATCGGAAG  191
      |||||||||||| |||||||||||||| ||||||||||||||||| ||||
seq2  CGGAGTGTGTTATTTTTTATGACACACTTTTTCTGCTGTATGATC-GAAG  193

seq1  AAGAGACATTGTTTGAAAGTCTTTTAATTCCCAATAGTGCAACAGGTCAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATTGTTTGAAAGTCTTTTAATTCCCAATAGTGCAACAGGTCAG  243

seq1  TAATCAGTCAGCCAGATATTTTCAGTCTGTTTGTTGTTATGAGTTAATGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTCAGCCAGATATTTTCAGTCTGTTTGTTGTTATGAGTTAATGT  293

seq1  CTCTAGTGTGTCATGAATGAAAGCCATGAAGGTGCTGAGGAAGAACATTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTGTGTCATGAATGAAAGCCATGAAGGTGCTGAGGAAGAACATTC  343

seq1  TGGTGTCACCTGTATATTAGCATGTATCTGCCACATATCAGAAAGCATAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCACCTGTATATTAGCATGTATCTGCCACATATCAGAAAGCATAT  393

seq1  ACACTTTCATAGGGGATATTTAGTGATGCACCTGTTATGGAGCCTCTCTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCATAGGGGATATTTAGTGATGCACCTGTTATGGAGCCTCTCTG  443

seq1  GAATGAAGACTTTGCAATTGAATTGGGTTGGTGAGGAAAAACCTTAATAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGACTTTGCAATTGAATTGGGTTGGTGAGGAAAAACCTTAATAT  493

seq1  CATTTTGTACTGCTTAAATTGTATATTAAGCATATATCACCTATTATGGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTACTGCTTAAATTGTATATTAAGCATATATCACCTATTATGGT  543

seq1  AAAAATAATTCATATAAACCTTTAGAGTATTTGGAAGGATTTGATTATTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTCATATAAACCTTTAGAGTATTTGGAAGGATTTGATTATTG  593

seq1  CTGTTGGATTGGGTTGAGTTAAAGTGTCTAATGAACACCAGGCATTTTGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGATTGGGTTGAGTTAAAGTGTCTAATGAACACCAGGCATTTTGA  643

seq1  ATTATATGGCTCAGCTTACTAAATTGGCTTTTGGATCCTACACTGTTGTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGGCTCAGCTTACTAAATTGGCTTTTGGATCCTACACTGTTGTC  693

seq1  TTAGAATTATCTATAACACTTTTGCATGACAATTGGTTATACCATATTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTATCTATAACACTTTTGCATGACAATTGGTTATACCATATTGT  743

seq1  CGTGAAATGGTGACTCATTTGGAGTAATAAGGTTTTCAGTTAGTTTTCTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAATGGTGACTCATTTGGAGTAATAAGGTTTTCAGTTAGTTTTCTC  793

seq1  ATGAATATTTTTTGTTATGTTATATTTTCTATAATAAAAGTGAATCAAAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATTTTTTGTTATGTTATATTTTCTATAATAAAAGTGAATCAAAG  843

seq1  CAATGGAAAATGTTTCACAAAACACAAATATGGTGAGTGGGAGATAGAAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAAATGTTTCACAAAACACAAATATGGTGAGTGGGAGATAGAAT  893

seq1  GACCTTTCTGCATCACTGTTAGCTTGGTCATAGATAATCAGGTATACACT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTCTGCATCACTGTTAGCTTGGTCATAGATAATCAGGTATACACT  943

seq1  AGGGTCTCTTTATTCAGTGAGAAATAAATAAAATGGCTGCCTCTAGTAGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCTTTATTCAGTGAGAAATAAATAAAATGGCTGCCTCTAGTAGT  993

seq1  ACTTCCCATTCTTCTTTCTTGGAAATATCTTTGTTATTGATATCATTTTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCATTCTTCTTTCTTGGAAATATCTTTGTTATTGATATCATTTTG  1043

seq1  TGTGTATATGTGTTTTTCATTTATAACATATGCCTGTTTAAGCCCCTACT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATGTGTTTTTCATTTATAACATATGCCTGTTTAAGCCCCTACT  1093

seq1  ATTCTTGGAGGCCAGAATAAAATATTGGATTCTCTAAAACTGTGGGTTCC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGAGGCCAGAATAAAATATTGGATTCTCTAAAACTGTGGGTTCC  1143

seq1  AAACTCAGAACTCCCTCATATCCTGTGTAGAATTC  1176
      |||||||||||||||||||||||||||||||||||
seq2  AAACTCAGAACTCCCTCATATCCTGTGTAGAATTC  1178


seq1: chr6_68901814_68902171
seq2: B6Ng01-282O09.g_454_815

seq1  AATTTATGAAATTCTTGGGCAAATGGATATATCTGGAGGATATCTTCCTG  50
      ||||||| |||||||||| |||||||||  |||||||||||||| |||| 
seq2  AATTTATAAAATTCTTGGACAAATGGATGGATCTGGAGGATATCATCCTT  50

seq1  AGTGAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGGT  100
      ||||||||||||||| ||||||||||||||||||||||| |||||||| |
seq2  AGTGAGGTAACCCAAACACAAAAGAAGTCACTTGATATGTACTCACTGAT  100

seq1  AAGTGGATATTAGCCCAGAAATCTAGAATACCCAAGATACAACTTTCAAA  150
      ||||||| |||||||||||||  ||||||||||||||||||| || ||||
seq2  AAGTGGAAATTAGCCCAGAAACTTAGAATACCCAAGATACAATTTGCAAA  150

seq1  ACACAAGAAAATCAAGAAG----AAGAACCAACTCGTGGATACTTCATTC  196
      ||||||||||||||| |||    |||||| || | |||||||||||||||
seq2  ACACAAGAAAATCAAAAAGAACTAAGAACAAAGT-GTGGATACTTCATTC  199

seq1  CTCCCTAGAATAGGGAATAAAATATCCA-TGGAAGAAGTTACAGAGACAA  245
      |||| ||||||||||||||||| | ||| |||||| ||||||| ||||||
seq2  CTCCTTAGAATAGGGAATAAAACACCCATTGGAAGGAGTTACAAAGACAA  249

seq1  AGTTTGGAGCTAAGATGAAAGGATGGACAATCCAGAGATTGCCCCACCCG  295
      ||||||||| ||||||||||||||| || ||||||||| | ||| |||| 
seq2  AGTTTGGAGGTAAGATGAAAGGATGCACCATCCAGAGACTACCCAACCCA  299

seq1  GGGGTCCATCCCATAATCTGCCACCAAACGCAGACACTATTGCATATGCC  345
      |||||||||||||||||| | |||||||| ||||||||| ||||||||||
seq2  GGGGTCCATCCCATAATCAGTCACCAAACCCAGACACTACTGCATATGCC  349

seq1  AGAAAGATTTTGC  358
      || ||||||||||
seq2  AGCAAGATTTTGC  362


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