BAC Information

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BAC

Clone NameB6Ng01-283E18
Chromosome14 (Build37)
Map Location 118,931,289 - 118,932,346
singlet/doubletsinglet
Overlap geneAbcc4
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283E18.bB6Ng01-283E18.g
ACCGA082295GA082296
length3781,061
definitionB6Ng01-283E18.b B6Ng01-283E18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aacctaggagaacacagtgtctctgagaaaggaaattagggatttttatc
tttcacatgcttctggagctgtaggtgggcttggctgcctgtacctgtgt
acccacctgtctctttttctatgtgtgtgtgtgtatatatatatatatat
atatatatatgtacacacacacacagagaaagagagagagggagacacag
agacagagacacacacacacacacagagacagacacgtgtgagagagaaa
aaaatatttttttttttctcagagagagtgtgtgtgtgtgtgtgtgtgtg
tgcgcgtgctctctcgagagagagaggtgtgcgcgcgcgcgtgtgtgtga
gagagatatagatacacacactctctaa
gaattccaagaaatttgggggtggctttgaaggtacctgtacctttaaaa
aatgatccagtttcttctgtgccctgtttatctgcatacggatcacatgc
catttgggtaagctaaggactacgaaaataattaactagttcacctaaca
agcatgctacattctgggggccatctggcctttcccccacattactagaa
ggatatcttgaagtagactctatgacacagatgtcatttgtcagcaattt
caggaaggtgacatcctgcattgcttaatattgtggcttttccaggactc
tgaagcccctctgggacacaagctaagggattatgtttctcctcagagaa
gaagcctagagagagcctgcaggccgcgttcctgccctgccaggataact
tcaggataccacgggacacttgtcattaactggtttgattttcttctgtt
gccattggtagtagccagcaaggacttccaagcattacctcaagcgatga
gaaccctgcagggcagacattaaaagccctcacaaagggaagaacatatc
ggggtactcggaccacactatacagctgtcttctttccaacactcttctc
atctgagccagtatctcaaaaggagagtaatctgcgttaagtatgctggg
tgtttttctctagactttgtcacaaagagaacccacagttctctctctgc
taatacctggtcggtatccccaatactggagttctcactaagccgctcaa
ggtgggcaacacactagagaacctgacatggcacgctttggaagagcaca
ctgcgggatatatgttcttaaatatgtggcacaaggttaatactctgata
gctgatgcccgtggcagacatggctaatggatcacagcatcctgacagga
atgacaacataccttcataatctaggcattactaaattgacagggttcag
cttgtgtcacgcatccaggtactgtgtggtttatgcaactatgtaccact
ggccttgcaatgttactttacaataacagcaaaaacacccccccctccca
acaacaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118931289_118932346
seq2: B6Ng01-283E18.g_65_1125

seq1  GAATTCCAAGAAATTTGGGGGTGGCTTTGAAGGTACCTGTACCTTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAAATTTGGGGGTGGCTTTGAAGGTACCTGTACCTTTAAAA  50

seq1  AATGATCCAGTTTCTTCTGTGCCCTGTTTATCTGCATACGGATCACATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCCAGTTTCTTCTGTGCCCTGTTTATCTGCATACGGATCACATGC  100

seq1  CATTTGGGTAAGCTAAGGACTACGAAAATAATTAACTAGTTCACCTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGTAAGCTAAGGACTACGAAAATAATTAACTAGTTCACCTAACA  150

seq1  AGCATGCTACATTCTGGGGGCCATCTGGCCTTTCCCCCACATTACTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTACATTCTGGGGGCCATCTGGCCTTTCCCCCACATTACTAGAA  200

seq1  GGATATCTTGAAGTAGACTCTATGACACAGATGTCATTTGTCAGCAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCTTGAAGTAGACTCTATGACACAGATGTCATTTGTCAGCAATTT  250

seq1  CAGGAAGGTGACATCCTGCATTGCTTAATATTGTGGCTTTTCCAGGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTGACATCCTGCATTGCTTAATATTGTGGCTTTTCCAGGACTC  300

seq1  TGAAGCCCCTCTGGGACACAAGCTAAGGGATTATGTTTCTCCTCAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCCCTCTGGGACACAAGCTAAGGGATTATGTTTCTCCTCAGAGAA  350

seq1  GAAGCCTAGAGAGAGCCTGCAGGCCGCGTTCCTGCCCTGCCAGGATAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTAGAGAGAGCCTGCAGGCCGCGTTCCTGCCCTGCCAGGATAACT  400

seq1  TCAGGATACCACGGGACACTTGTCATTAACTGGTTTGATTTTCTTCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATACCACGGGACACTTGTCATTAACTGGTTTGATTTTCTTCTGTT  450

seq1  GCCATTGGTAGTAGCCAGCAAGGACTTCCAAGCATTACCTCAAGCGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGGTAGTAGCCAGCAAGGACTTCCAAGCATTACCTCAAGCGATGA  500

seq1  GAACCCTGCAGGGCAGACATTAAAAGCCCTCACAAAGGGAAGAACATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGCAGGGCAGACATTAAAAGCCCTCACAAAGGGAAGAACATATC  550

seq1  GGGGTACTCGGACCACACTATACAGCTGTCTTCTTTCCAACACTCTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTCGGACCACACTATACAGCTGTCTTCTTTCCAACACTCTTCTC  600

seq1  ATCTGAGCCAGTATCTCAAAAGGAGAGTAATCTGCGTTAAGTATGCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGCCAGTATCTCAAAAGGAGAGTAATCTGCGTTAAGTATGCTGGG  650

seq1  TGTTTTTCTCTAGACTTTGTCACAAAGAGAACCCACAGTTCTCTCTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTCTAGACTTTGTCACAAAGAGAACCCACAGTTCTCTCTCTGC  700

seq1  TAATACCTGGTCGGTATCCCCAATACTGGAGTTCTCACTAAGCCGCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTGGTCGGTATCCCCAATACTGGAGTTCTCACTAAGCCGCTCAA  750

seq1  GGTGGGCAACACACTAGAGAACCTGACATGGCACGCTTTGGAAGAGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCAACACACTAGAGAACCTGACATGGCACGCTTTGGAAGAGCACA  800

seq1  CTGCGGGATATATGTTCTTAAAATATGTGGCAC-AGGTTAATACTCTGAT  849
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  CTGCGGGATATATGTTCTT-AAATATGTGGCACAAGGTTAATACTCTGAT  849

seq1  AGCTGATGCCCGTGGCAGACATGGCTAATGGATCACAGCATCCTGACAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGCCCGTGGCAGACATGGCTAATGGATCACAGCATCCTGACAGG  899

seq1  AATGACAACATACCTTCATAATCTAGGCATTACTAAA-TGACAGGG-TCA  947
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  AATGACAACATACCTTCATAATCTAGGCATTACTAAATTGACAGGGTTCA  949

seq1  GCTTGTGTCACGCATCCAAGTACTGTTGTGGTTTTATGCAACTATGTACC  997
      |||||||||||||||||| |||||| ||||| ||||||||||||||||||
seq2  GCTTGTGTCACGCATCCAGGTACTG-TGTGG-TTTATGCAACTATGTACC  997

seq1  ACTGGCCTTTGCAATGTTTACTTTTACAAATAAACAAGCAAAAACACCCC  1047
      ||||||| |||||||| |||| ||||| |||||   ||||||||||||||
seq2  ACTGGCC-TTGCAATG-TTAC-TTTAC-AATAA--CAGCAAAAACACCCC  1041

seq1  CCCC---------CAAACAA  1058
      ||||         |||||||
seq2  CCCCTCCCAACAACAAACAA  1061