BAC Information

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BAC

Clone NameB6Ng01-285A21
Chromosome14 (Build37)
Map Location 111,691,653 - 111,692,828
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285A21.bB6Ng01-285A21.g
ACCGA083603GA083604
length1,1691,156
definitionB6Ng01-285A21.b B6Ng01-285A21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagctgagtcttagtccattgtgttaatatacc
acaatttctgtatcctttactttgtggaaggacatctggcttctttccag
cttctagctattataaataaggctgctatgaacatagtggatcatgtatc
cttgttatatgttggagtctttgggaagcatatgcctaagagtggtatag
ctggatcctcagtcagtacaacttccaattttctgaggagctaccagtct
gatttccagagtcgttgaacaagcttgcaatcccaccagcaatggaggag
tttttccccttctccacatcctcaccagcatctgctgttgcccgagtttt
tgatcttagctgttctgactgctgtgaggtggaacctcatggttgttttc
atttgcatttccctaatgactaagggtgttgaacatctctttaggtgctt
ccaaacatttggtattcctcagttgagtattatatatttagctctgtatc
ccattttaaaatagggttatttggttctctagagtctaacttcttgaact
ctttgtagatatgggatattagccatctattggaagtaggattggtaaag
atcattttccaatctgttggttgctgctttttttcctattgacagtgttc
tttgccttgcttttcaattttatgatgttccctttgtcaattcttggtct
tagtacaggaaaatttcccatatgcccatgtcctcaaggtgcttcaccac
tttcatttctattagattcagtgtatctggttttatgtggagatccttga
tccactgggacttaagctttgtaaaaggaaataagaatggatcaatttgg
attcttatacatgtggaccaccagttgaaccagcgccatttgttggaaaa
gctgtatttttccactggatggttttacctgctttgccaaagatcaaaaa
ccacggatgtgtgattcatttctgggttttcaattctattccatgatctc
tgctgtctctgtacaatacagtagtttcatcactatgctctgtaatacag
atgagtagcatgcgattcccagaagaatctttggatcatttaagaaaagt
ttcgcatgcttgagttgctgaatcgtaatcgacttaggtcgttgggattg
agaatgggactggcattac
gaattctcgaaaatattaaaaactaaccagaaagaaatgaatataaacat
tactcacgtgaaaagtttactgagccatctacttcacttcctaaacttat
gaagagaaaccatgtgaaagggcatttcaaactcatatataagacttttt
ctaagcaaatacatggacgagttgcaattatatctacatttgaacagaag
tactgataatttttttacctcatttaccatacttttttttcctccaagtt
tttagttttagttttaacaaatttatatggaaaatataaattcaatttaa
ctaaaatattcaggaacactgaaatgatcagttagcataggattgatctt
attggatcttaaatgacatgtccatcaggacacgaatctacaatatgttt
acaatgttgaataactggggtcttaagagtatactttgaaattctagtga
aattttgtatgcttaatatagctcatttagccacacagtaggtctatatt
taaaattttcctttttatttcctgataaaattaaggattaagcaatcaag
ttatactattaaagcaatagtaatatagtaaaaacattccataaagctgc
caagtaggttgtacttaaaacagaaacattcgcctacacaaagaaatatt
acgtctaacagacaaagtacacagggataaactttaaaagaaatggcatt
tcctccttacttggcttacattgattagctgtagatgtgccatgcattca
gagacactcaacttttcctctaagggtcaattgaagagtcaatgacttga
ggggcaatgaggaaggatatttctgtctcattctcaccctgtgttttctc
tgaatttctggtgttatctttggcactttaagtccctaaaatgctagtaa
ttacttttcttgacttagtagccacacaacagtaattttatgtcaactaa
catgggatacttaataatttccttgagattatataaaccctggatattta
tactacagcagaaagcttcataaatagcaaataatatttatgagaaggga
aatttgtacatacattttttaccccttatgttatataaaaaaaccatcac
tttaatgaattgaatccagacttcactgacgaaagatgttgaaatttcca
tccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111691653_111692828
seq2: B6Ng01-285A21.g_65_1220 (reverse)

seq1  AAAGGATGG-AATTTC-ACATCTTTTCCCTTCCTGTAAATCTGTGATTCT  48
      ||||||||| |||||| ||||||||   | ||    || |||| ||||| 
seq2  AAAGGATGGAAATTTCAACATCTTT---CGTCAGTGAAGTCTG-GATTC-  45

seq1  ATTTCATT-AAGTGAATGGTTTTTTTTAATATACATTAGGGGTAAAAATG  97
      | |||||| ||||| |||||||||||  ||| |||| |||||||||||  
seq2  AATTCATTAAAGTG-ATGGTTTTTTTATATA-ACATAAGGGGTAAAAAAT  93

seq1  GTATTGTTACAAATTTCCCTTTCTTCATAAATATTTATTTTGCTTAATTT  147
      ||||   ||||||||||||||   |||||||||||   ||||||  ||||
seq2  GTAT--GTACAAATTTCCCTT--CTCATAAATATT--ATTTGCT--ATTT  135

seq1  ATGAAGCTTTCTTGGCTGTAAGTATAAAATTATCCAGGGTTTAATATTAA  197
      ||||||||||||  ||||| ||||||||  |||||||||||| ||| |||
seq2  ATGAAGCTTTCT--GCTGT-AGTATAAA--TATCCAGGGTTT-ATA-TAA  178

seq1  TCTCAAGGAAATTTATTTAAGTATCCCATGTTTAGTTGACATAAAATTAC  247
      |||||||||||||   |||||||||||||| |||||||||||||||||| 
seq2  TCTCAAGGAAATT--ATTAAGTATCCCATG-TTAGTTGACATAAAATTA-  224

seq1  CTGTTGTGTGGCTACTAAGTCAAGAAAAGTAATTACTAGCATTTTAGGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTGTGGCTACTAAGTCAAGAAAAGTAATTACTAGCATTTTAGGGA  274

seq1  CTTAAAGTGCCAAAGATAACACCAGAAATTCAGAGAAAACACAGGGTGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTGCCAAAGATAACACCAGAAATTCAGAGAAAACACAGGGTGAG  324

seq1  AATGAGACAGAAATATCCTTCCTCATTGCCCCTCAAGTCATTGACTCTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACAGAAATATCCTTCCTCATTGCCCCTCAAGTCATTGACTCTTC  374

seq1  AATTGACCCTTAGAGGAAAAGTTGAGTGTCTCTGAATGCATGGCACATCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACCCTTAGAGGAAAAGTTGAGTGTCTCTGAATGCATGGCACATCT  424

seq1  ACAGCTAATCAATGTAAGCCAAGTAAGGAGGAAATGCCATTTCTTTTAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAATCAATGTAAGCCAAGTAAGGAGGAAATGCCATTTCTTTTAAA  474

seq1  GTTTATCCCTGTGTACTTTGTCTGTTAGACGTAATATTTCTTTGTGTAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCCTGTGTACTTTGTCTGTTAGACGTAATATTTCTTTGTGTAGG  524

seq1  CGAATGTTTCTGTTTTAAGTACAACCTACTTGGCAGCTTTATGGAATGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGTTTCTGTTTTAAGTACAACCTACTTGGCAGCTTTATGGAATGTT  574

seq1  TTTACTATATTACTATTGCTTTAATAGTATAACTTGATTGCTTAATCCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATATTACTATTGCTTTAATAGTATAACTTGATTGCTTAATCCTT  624

seq1  AATTTTATCAGGAAATAAAAAGGAAAATTTTAAATATAGACCTACTGTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATCAGGAAATAAAAAGGAAAATTTTAAATATAGACCTACTGTGT  674

seq1  GGCTAAATGAGCTATATTAAGCATACAAAATTTCACTAGAATTTCAAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAATGAGCTATATTAAGCATACAAAATTTCACTAGAATTTCAAAGT  724

seq1  ATACTCTTAAGACCCCAGTTATTCAACATTGTAAACATATTGTAGATTCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTAAGACCCCAGTTATTCAACATTGTAAACATATTGTAGATTCG  774

seq1  TGTCCTGATGGACATGTCATTTAAGATCCAATAAGATCAATCCTATGCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGATGGACATGTCATTTAAGATCCAATAAGATCAATCCTATGCTA  824

seq1  ACTGATCATTTCAGTGTTCCTGAATATTTTAGTTAAATTGAATTTATATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCATTTCAGTGTTCCTGAATATTTTAGTTAAATTGAATTTATATT  874

seq1  TTCCATATAAATTTGTTAAAACTAAAACTAAAAACTTGGAGGAAAAAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATAAATTTGTTAAAACTAAAACTAAAAACTTGGAGGAAAAAAAA  924

seq1  GTATGGTAAATGAGGTAAAAAAATTATCAGTACTTCTG-TCAAATGTAGA  996
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTATGGTAAATGAGGTAAAAAAATTATCAGTACTTCTGTTCAAATGTAGA  974

seq1  TATA--TTCAACTCGTCCATGTATTTGCTTAGAAAAAGTCTTATATATGA  1044
      ||||  | ||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGCAACTCGTCCATGTATTTGCTTAGAAAAAGTCTTATATATGA  1024

seq1  GTTTGAAATGCCCTTTCACATGGTTTCTCTTCATAAGTTTAGGAAGTGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAATGCCCTTTCACATGGTTTCTCTTCATAAGTTTAGGAAGTGAA  1074

seq1  GTAGATGGCTCAGTAAACTTTTCACGTGAGTAATGTTTATATTCATTTCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGGCTCAGTAAACTTTTCACGTGAGTAATGTTTATATTCATTTCT  1124

seq1  TTCTGGTTAGTTTTTAATATTTTCGAGAATTC  1176
      ||||||||||||||||||||||||||||||||
seq2  TTCTGGTTAGTTTTTAATATTTTCGAGAATTC  1156