BAC Information

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BAC

Clone NameB6Ng01-285B09
Chromosome14 (Build37)
Map Location 44,336,760 - 44,473,006
singlet/doubletdoublet
Overlap geneLOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9
Upstream geneLOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717
Downstream geneEar-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285B09.bB6Ng01-285B09.g
ACCGA083626GA083627
length1,165747
definitionB6Ng01-285B09.b B6Ng01-285B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,471,852 - 44,473,006)(44,336,760 - 44,337,508)
sequence
gaattcttgatgtagatcagccttgagtccaaactcacaaaattctggga
ttacagcatgcaccatcacatctggccttgacatcttaagatgtgtatgt
ctcatattttacacaggatattttaataccttatattgacgtgtgaaaat
aaatatccagtccattctgtttagatgacctaggtttaatatcaaataga
ttactttctatcatgacctctgacacattatttaacttttctgaatctgc
tcatctgtacagcacacatgacctcacatccatctcagtgttgttgagag
tagtaagtaaaacagagttgctgcataagagtcaaactctattctgctag
attcttcatctgctgctgctgtcctgaaccagtctggcaggatctggagt
ctgcttctcttccagttttggctttctgctgctattctgcccagtttgta
tttcacagggttataattcctcccaggtttgttactacaattgtatctca
tatactctccctgctctcaggttaacccacccttaatccatctcttgcct
tactgactgagtgatctgaccatgtaattaaaaggctttaatcctccaga
gtaaacccaagctgcttcttgatctggtctccttgctcctctcttctctg
acttctccagtgatctgctcatggcaggtggtcctctgggactcccaggg
ctgggcagctgttcctgctctcatggatgggtcactgaaagatgcagcac
tactgtgtttccttggagagctctttctctccattttatttattcaacac
tcactcttcttttaggtctccactcagctgtgacttgttctgaattccag
tatggagacacgttcgtcatgtcagatcacaatgtgatatcttgcttact
ggtttgtccttcactggactttgaagtcctgaatgaagaaactctcttgc
tcttgaatacccaatgtctaaccaagttagcactcaaggcaaggaaggtg
cttctgctgaggtactcattaccacccaatactgatcttaaacttgggtg
ttatttttctgtccccatggggaaacttttttttttgtcccttgtgaaat
tttgtcctttttggcttaatggatgttaagtcttacttctctcagtcttg
gccagactctagatc
gaattctctgaaaagctcttttgcaacatgacttacagttacaccttttc
agataattcgtctgaatctctaaaaggtattctattgctgctacactgaa
gatgaaatttccagggtttggacatgcctcaactgcctcttgccccaggc
ctgcttccctcagcccctagctctctggcctcacaaaaatcaatagtcta
taattcattaagagtctcttagagtctcctgacaaacacagccaaaggat
gtctcccatgccttatattggcactttttattcgatatcctatggctctt
ggggaagacttttttcccagtagcataactctctctctctctctttctct
ctctctctctctctctctctctctctctctctgtgtgtgtgtctcacact
ctctctctttctatacatatttaacccctccctgctctatccattttcct
ttacatatcgtcttatcatctgtatcctgcctgcctattctactccccag
gtctctatatatatttttgttttctatggttactgcagattaagaccatt
gaataatagtgagctattttgcagtattctactctctagaatacagacaa
aggatagagaaagtgagaattagtgatattacacatcacatggacggata
ctcgcagaatattctacccaagaacctaacaataaacatttctactcaac
catccagggactcatctctaaaatagataagtttgtggatctcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44471852_44473006
seq2: B6Ng01-285B09.b_50_1214 (reverse)

seq1  GATCTAGAGTCCCTGCCAGACTGA-AGAAGT-AGACT--ACATCCATTAA  46
      |||||||||||    | ||||||| |||||| |||||  |||||||||||
seq2  GATCTAGAGTCTGGCCAAGACTGAGAGAAGTAAGACTTAACATCCATTAA  50

seq1  GC--AAAAAGACAAAATTTCAC-AGGGAC---AAAAAAAGTTTCCCCATG  90
      ||  |||| ||||||||||||| ||||||   ||||||||||||||||||
seq2  GCCAAAAAGGACAAAATTTCACAAGGGACAAAAAAAAAAGTTTCCCCATG  100

seq1  GGGACAG-AAAATAACACCCAAGTTTAAGATCAGTATTGGGTGGTAATGA  139
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAAAAATAACACCCAAGTTTAAGATCAGTATTGGGTGGTAATGA  150

seq1  GTACCTCAGCAGAAGCACCTTCCTTGGCCTTGAGTGCTAACTTGGTTAGA  189
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTACCTCAGCAGAAGCACCTTCCTT-GCCTTGAGTGCTAACTTGGTTAGA  199

seq1  CATTGGGTATTCAAGAGCAAGAGAGTTTCTTCATTCAGGACTTCAAAGTC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGTATTCAAGAGCAAGAGAGTTTCTTCATTCAGGACTTCAAAGTC  249

seq1  CAGTGAAGGACAAACCAGTAAGCAAGATATCACATTGTGATCTGACATGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGGACAAACCAGTAAGCAAGATATCACATTGTGATCTGACATGA  299

seq1  CGAACGTGTCTCCATACTGGAATTCAGAACAAGTCACAGCTGAGTGGAGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACGTGTCTCCATACTGGAATTCAGAACAAGTCACAGCTGAGTGGAGA  349

seq1  CCTAAAAGAAGAGTGAGTGTTGAATAAATAAAATGGAGAGAAAGAGCTCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGAAGAGTGAGTGTTGAATAAATAAAATGGAGAGAAAGAGCTCT  399

seq1  CCAAGGAAACACAGTAGTGCTGCATCTTTCAGTGACCCATCCATGAGAGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAACACAGTAGTGCTGCATCTTTCAGTGACCCATCCATGAGAGC  449

seq1  AGGAACAGCTGCCCAGCCCTGGGAGTCCCAGAGGACCACCTGCCATGAGC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGCTGCCCAGCCCTGGGAGTCCCAGAGGACCACCTGCCATGAGC  499

seq1  AGATCACTGGAGAAGTCAGAGAAGAGAGGAGCAAGGAGACCAGATCAAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTGGAGAAGTCAGAGAAGAGAGGAGCAAGGAGACCAGATCAAGA  549

seq1  AGCAGCTTGGGTTTACTCTGGAGGATTAAAGCCTTTTAATTACATGGTCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTGGGTTTACTCTGGAGGATTAAAGCCTTTTAATTACATGGTCA  599

seq1  GATCACTCAGTCAGTAAGGCAAGAGATGGATTAAGGGTGGGTTAACCTGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTCAGTCAGTAAGGCAAGAGATGGATTAAGGGTGGGTTAACCTGA  649

seq1  GAGCAGGGAGAGTATATGAGATACAATTGTAGTAACAAACCTGGGAGGAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGAGAGTATATGAGATACAATTGTAGTAACAAACCTGGGAGGAA  699

seq1  TTATAACCCTGTGAAATACAAACTGGGCAGAATAGCAGCAGAAAGCCAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACCCTGTGAAATACAAACTGGGCAGAATAGCAGCAGAAAGCCAAA  749

seq1  ACTGGAAGAGAAGCAGACTCCAGATCCTGCCAGACTGGTTCAGGACAGCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGAGAAGCAGACTCCAGATCCTGCCAGACTGGTTCAGGACAGCA  799

seq1  GCAGCAGATGAAGAATCTAGCAGAATAGAGTTTGACTCTTATGCAGCAAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGATGAAGAATCTAGCAGAATAGAGTTTGACTCTTATGCAGCAAC  849

seq1  TCTGTTTTACTTACTACTCTCAACAACACTGAGATGGATGTGAGGTCATG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTACTTACTACTCTCAACAACACTGAGATGGATGTGAGGTCATG  899

seq1  TGTGCTGTACAGATGAGCAGATTCAGAAAAGTTAAATAATGTGTCAGAGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTACAGATGAGCAGATTCAGAAAAGTTAAATAATGTGTCAGAGG  949

seq1  TCATGATAGAAAGTAATCTATTTGATATTAAACCTAGGTCATCTAAACAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATAGAAAGTAATCTATTTGATATTAAACCTAGGTCATCTAAACAG  999

seq1  AATGGACTGGATATTTATTTTCACACGTCAATATAAGGTATTAAAATATC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTGGATATTTATTTTCACACGTCAATATAAGGTATTAAAATATC  1049

seq1  CTGTGTAAAATATGAGACATACACATCTTAAGATGTCAAGGCCAGATGTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAAATATGAGACATACACATCTTAAGATGTCAAGGCCAGATGTG  1099

seq1  ATGGTGCATGCTGTAATCCCAGAATTTTGTGAGTTTGGACTCAAGGCTGA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCATGCTGTAATCCCAGAATTTTGTGAGTTTGGACTCAAGGCTGA  1149

seq1  TCTACATCAAGAATTC  1155
      ||||||||||||||||
seq2  TCTACATCAAGAATTC  1165

seq1: chr14_44336760_44337508
seq2: B6Ng01-285B09.g_68_814

seq1  GAATTCTCTGAAAAGCTCTTTTGCAACATGACTTACAGTTACACCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAAAGCTCTTTTGCAACATGACTTACAGTTACACCTTTTC  50

seq1  AGATAATTCGTCTGAATCTCTAAAAGGTATTCTATTGCTGCTACACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTCGTCTGAATCTCTAAAAGGTATTCTATTGCTGCTACACTGAA  100

seq1  GATGAAATTTCCAGGGTTTGGACATGCCTCAACTGCCTCTTGCCCCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATTTCCAGGGTTTGGACATGCCTCAACTGCCTCTTGCCCCAGGC  150

seq1  CTGCTTCCCTCAGCCCCTAGCTCTCTGGCCTCACAAAAATCAATAGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCTCAGCCCCTAGCTCTCTGGCCTCACAAAAATCAATAGTCTA  200

seq1  TAATTCATTAAGAGTCTCTTAGAGTCTCCTGACAAACACAGCCAAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATTAAGAGTCTCTTAGAGTCTCCTGACAAACACAGCCAAAGGAT  250

seq1  GTCTCCCATGCCTTATATTGGCACTTTTTATTCGATATCCTATGGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCATGCCTTATATTGGCACTTTTTATTCGATATCCTATGGCTCTT  300

seq1  GGGGAAGACTTTTTTCCCAGTAGCATAACTCTCTCTCTCTCTCTTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGACTTTTTTCCCAGTAGCATAACTCTCTCTCTCTCTCTTTCTCT  350

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACA  400
      |||||||||||||||||||||||||||||||| | |      | ||||| 
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTCTCACACT  400

seq1  CACACACATCCTTCTCAAATTAAACCTCTCCCTGTTTTATCCATTTTCCT  450
      | | | | | ||   || ||| |||| ||||||| | |||||||||||||
seq2  CTCTCTCTTTCTATACATATTTAACCCCTCCCTGCTCTATCCATTTTCCT  450

seq1  TTTCATATCACCTTATCACCTGTATCCTGCCAGCCTATTCTACTCCCCTG  500
      || ||||||  ||||||| |||||||||||| |||||||||||||||| |
seq2  TTACATATCGTCTTATCATCTGTATCCTGCCTGCCTATTCTACTCCCCAG  500

seq1  GTCTCCATTTATATTTTTGTTTTCTATGGTTACTGCAGATTAAGACCAAT  550
      ||||| || |||||||||||||||||||||||||||||||||||||| ||
seq2  GTCTCTATATATATTTTTGTTTTCTATGGTTACTGCAGATTAAGACC-AT  549

seq1  TGAATAATAGTGAGCTATTTTGCAGTATTCTACTCTCCAGAATACAGACA  600
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGAATAATAGTGAGCTATTTTGCAGTATTCTACTCTCTAGAATACAGACA  599

seq1  AAAGATAGAGAAACATGAGAATTAAATGATATTACACATCAAATGGACGG  650
      || ||||||||||  |||||||| | ||||||||||||||| ||||||||
seq2  AAGGATAGAGAAA-GTGAGAATT-AGTGATATTACACATCACATGGACGG  647

seq1  ATACGTGCAGAATATTCTACCCAAGTACCAAAGAATAAACA-TTCTACTC  699
      ||||  ||||||||||||||||||| ||| || |||||||| ||||||||
seq2  ATACTCGCAGAATATTCTACCCAAGAACCTAACAATAAACATTTCTACTC  697

seq1  AACAATCCAGGGACTCATCTCTAAAATAGAGAAGTTTGTGGATCACAAAA  749
      ||| |||||||||||||||||||||||||| ||||||||||||| |||||
seq2  AACCATCCAGGGACTCATCTCTAAAATAGATAAGTTTGTGGATCTCAAAA  747