BAC Information

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BAC

Clone NameB6Ng01-285N15
Chromosome14 (Build37)
Map Location 88,900,171 - 88,901,291
singlet/doubletsinglet
Overlap genenone
Upstream geneTdrd3, LOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285N15.bB6Ng01-285N15.g
ACCGA084195GA084196
length6061,121
definitionB6Ng01-285N15.b B6Ng01-285N15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctagaggctaaagcattggtcaccagatgtggccctagaactgc
aagaggaaatgaacatgtgtccccaccctaaaccccaaacccagatctcc
agttaacaaaacacctgcaaatcaaaagttggtttctttcatgggaatct
cactgattaaaaaactactattagaagtgttttgaatgccaagcattaga
gggaaaacagaaaagaccctcaaaggcatctttggaggtttcttgtttca
tgatgtcatgtcatagctttttgttgttcctgttgttaataaatatgtct
tttttttttaatgttctattttcatgttttaaccctaaaggtcctttgta
tatgtaatggcttcctgtttctattttatatgatactcctgaatgtggga
atgaatgggtctctgcacctatgtctgttccctatgcattttctaggaca
ctctttcttccttctgtttgtttgtctgtttgtattgtcttgttccaata
tatttgttttcgttttatattactttattttatcttatccctattcctta
gatgcttatttgttttataatgagaaaggggctgggaggtgggaaggagg
agagtg

gaattcattggtcctgtcttagaataaaatgaaattatgacaattatgaa
aaaaaacagagacactaagtcattctacacacagaaaagcccaataaact
ttaatggagatcacttttaagcttatttaattaagtttaaaagttatcaa
cataaagaaattcataagtgggctgctaacagctctgtctggtgggatag
cctcacaaaggtatgcttatagttctatacatataaattactatagttta
taattgtaaacagtattaatagccacaacaatattctttcttcatcaaaa
taaataatcttgcctgacaaatatataacaaagaggataaaggcacactg
acttaaccattttaagaagtacagtctaatgcatccaagtgaaattgaat
tctctctccatttgagttatatattaagtttcagatacccaaactacaaa
tgcatttcagattgtttgcaggctatatggaactcgtagcatgcagtttc
atttggcttttaaacctgacttataatctatgcaaatgctgactatgtaa
aacaagtaatctagtaacttattacagaagagccagctgctggtgcaaat
tatgcttttattattcaaacagagttatgtttgatgcatctgaattttga
attatgcaataacttgacttttcatattctacaaaacaaaagttaaagtt
atgatcactattcttttaactcaaacaacatttattcttaactcaagatg
tattctgtgttaatgacttaaaactaagaattcataaatgtaacagaaaa
tatttgacaactaggttaagttatttaccctgattttcaatttttcatac
tttattttttatacaagtttttaaaggtctaatctcgaaaacattggcct
caacttctattaatatccataaggacaaaattgtatctctccctaaagca
tgtcttaatgcaattcatgtgttatctaagtcatatttttaggcataaaa
gcagctactctgtttttgtatagctaagagtgttgttgtgcactctgagc
ttaatatttcctacacataggtctatttttattaataataaacacatcaa
tctcaggcattgtttaattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_88900171_88901291
seq2: B6Ng01-285N15.g_66_1186 (reverse)

seq1  ACAATGAAACAATGGCTGAGAATTGATGTGTT--ATATTATAAAAAATAG  48
      ||||| |||||||| ||||| |||||||||||   |||||  ||||||||
seq2  ACAATTAAACAATGCCTGAG-ATTGATGTGTTTATTATTAATAAAAATAG  49

seq1  A-CTATGTGTA-GAAATATAAGGCTCAAGAGTTCCACACAACACTCTTAG  96
      | ||||||||| ||||||| | |||| ||||| |   |||||||||||||
seq2  ACCTATGTGTAGGAAATATTAAGCTC-AGAGTGCACAACAACACTCTTAG  98

seq1  CTATACAAAAACAGAGTAGCTGGCTTTTATGCCTAAAAATTATGACTTAG  146
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  CTATACAAAAACAGAGTAGCT-GCTTTTATGCCTAAAAA-TATGACTTAG  146

seq1  ATAACACATGAATTGCATTAAGACATGCTTTAGGGAGAGATACAATTTTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACATGAATTGCATTAAGACATGCTTTAGGGAGAGATACAATTTTG  196

seq1  T-CTTATGGATATTTAATAGAAGTTGAGGCCAATGTTTTCGAGATTAGAC  245
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGGATA-TTAATAGAAGTTGAGGCCAATGTTTTCGAGATTAGAC  245

seq1  CTTTAAAAACTTGTATAAAAAATAAAGTATGAAAAATTGAAAATCAGGGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAACTTGTATAAAAAATAAAGTATGAAAAATTGAAAATCAGGGT  295

seq1  AAATAACTTAACCTAGTTGTCAAATATTTTCTGTTACATTTATGAATTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTAACCTAGTTGTCAAATATTTTCTGTTACATTTATGAATTCT  345

seq1  TAGTTTTAAGTCATTAACACAGAATACATCTTGAGTTAAGAATAAATGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTAAGTCATTAACACAGAATACATCTTGAGTTAAGAATAAATGTT  395

seq1  GTTTGAGTTAAAAGAATAGTGATCATAACTTTAACTTTTGTTTTGTAGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTTAAAAGAATAGTGATCATAACTTTAACTTTTGTTTTGTAGAA  445

seq1  TATGAAAAGTCAAGTTATTGCATAATTCAAAATTCAGATGCATCAAACAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAGTCAAGTTATTGCATAATTCAAAATTCAGATGCATCAAACAT  495

seq1  AACTCTGTTTGAATAATAAAAGCATAATTTGCACCAGCAGCTGGCTCTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTTTGAATAATAAAAGCATAATTTGCACCAGCAGCTGGCTCTTC  545

seq1  TGTAATAAGTTACTAGATTACTTGTTTTACATAGTCAGCATTTGCATAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAGTTACTAGATTACTTGTTTTACATAGTCAGCATTTGCATAGA  595

seq1  TTATAAGTCAGGTTTAAAAGCCAAATGAAACTGCATGCTACGAGTTCCAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTCAGGTTTAAAAGCCAAATGAAACTGCATGCTACGAGTTCCAT  645

seq1  ATAGCCTGCAAACAATCTGAAATGCATTTGTAGTTTGGGTATCTGAAACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGCAAACAATCTGAAATGCATTTGTAGTTTGGGTATCTGAAACT  695

seq1  TAATATATAACTCAAATGGAGAGAGAATTCAATTTCACTTGGATGCATTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATAACTCAAATGGAGAGAGAATTCAATTTCACTTGGATGCATTA  745

seq1  GACTGTACTTCTTAAAATGGTTAAGTCAGTGTGCCTTTATCCTCTTTGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTACTTCTTAAAATGGTTAAGTCAGTGTGCCTTTATCCTCTTTGTT  795

seq1  ATATATTTGTCAGGCAAGATTATTTATTTTGATGAAGAAAGAATATTGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGTCAGGCAAGATTATTTATTTTGATGAAGAAAGAATATTGTT  845

seq1  GTGGCTATTAATACTGTTTACAATTATAAACTATAGTAATTTATATGTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTATTAATACTGTTTACAATTATAAACTATAGTAATTTATATGTAT  895

seq1  AGAACTATAAGCATACCTTTGTGAGGCTATCCCACCAGACAGAGCTGTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATAAGCATACCTTTGTGAGGCTATCCCACCAGACAGAGCTGTTA  945

seq1  GCAGCCCACTTATGAATTTCTTTATGTTGATAACTTTTAAACTTAATTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCACTTATGAATTTCTTTATGTTGATAACTTTTAAACTTAATTAA  995

seq1  ATAAGCTTAAAAGTGATCTCCATTAAAGTTTATTGGGCTTTTCTGTGTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTTAAAAGTGATCTCCATTAAAGTTTATTGGGCTTTTCTGTGTGT  1045

seq1  AGAATGACTTAGTGTCTCTGTTTTTTTTCATAATTGTCATAATTTCATTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACTTAGTGTCTCTGTTTTTTTTCATAATTGTCATAATTTCATTT  1095

seq1  TATTCTAAGACAGGACCAATGAATTC  1121
      ||||||||||||||||||||||||||
seq2  TATTCTAAGACAGGACCAATGAATTC  1121


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