BAC Information

Click to search

BAC

Clone NameB6Ng01-287P21
Chromosome14 (Build37)
Map Location 32,401,414 - 32,525,301
singlet/doubletdoublet
Overlap geneHacl1, Btd, Ankrd28
Upstream genePrkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq
Downstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287P21.bB6Ng01-287P21.g
ACCGA085771GA085772
length1,1961,124
definitionB6Ng01-287P21.b B6Ng01-287P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,524,108 - 32,525,301)(32,401,414 - 32,402,532)
sequence
gaattcattgaaagggttccaaaattatatactcaaagatatgcttactc
cagttttgttatattgtacatattaaaattattttcttttactttacagc
aacaaatggtcattcagaatgcttacggttattaataggaaatgcagagc
cacagaatgcagtagatattcaagatggaaatggacagtacgtttcaatc
atttttaaatggttttttttttttttgagacagcatttgagtatataatc
caggcctccataacataatctcactacctcaccctctttagtgctgggat
tataggcatgtacactatattttgctcttaaattgttgttaaagtattaa
atattctaatacttttggtccctattttagtagatatatcaaagtttgta
actaaaaatgtcaaccatagctgtactggctagttttgtgtcaacttgac
acagctggagttatcacagagaaaggagcttcagttggggaagtgcctcc
acgagatccagctgcaaggcattttctcaattaatgatcaaaccgggagg
tccccttgtgggtggtgtcatctctgggctggtagtcctgggttctataa
gagagcaggctgagcaagggagcaggggaagcaagccagtaaagaacatc
cctccatggctctgcatcagctcctgcttcccgacctgcttgagttccag
tcctgacttccttggtgatgagcagcaatgtggaaatgtaagctgaataa
accctttcctctccagcttgcttcttggtcatgatgtttgtgcaggaata
gaaaccttgactaagacaaaaggttttcatttaaatacatataaagttat
attacaaaagtgcatatatgaaaaaataagccatcacatcattgccgttt
tgtcaagtggtgacactaaatctaaattccgttacttgttcaggacacct
cttatgctgtcggttctcaatggcacacggactgtgtatactcactactg
aacaaggagcaaatgtagatgccaagacaagtgggggaagacagcgttgc
acaagaggggttgagcaaaataaacataaatgcattatatgcgtgtgccc
tccccacaacaataggtgtgtgttaaaatacaccagtattttgcaaggca
atgacggccatgaagaggtgtagacgcataacttccaacattgtgc
gaattccagaccatgtggtcccagtgtccctaaggcaaggtgggaggagc
agactggaggagaacttctgaggggagaagggcaggagaggagggaaaga
ggagggtgtgtacagcagaaaaagggagatgctggctcccagatgttgtc
ccgtggtctctaccagctcctcactcgctccttaccccaccacattaaac
tgcttaaaagttaaccattagaaatagaattataagccagatggtggtgg
cctacacttctaatcccagcactcaggaggcaggcagagtttgaagccat
cctgattgagagacagagagagagagacaaagagagacagagacagacag
agacagagacagagataaagtataagccaggcttggtgcacgttttttaa
ttccaacactcaagaggcagaggcaggcagatctctgagttcaaagttct
tggtctacagagtttcaggacaaccagggatacactgagaaatcctgtct
caaaaaaacaaaacaaacaaacaaacaaaaaaaaaaacaaaaaaacccaa
aaccaaagaaaattaaagtgtaataactaccataatggatacacacacac
caatgtacacatatacaccttactagatgaacgaacactacaaaacaaaa
aatgaagggagtatacataataaataaacaataagaaagaagaaaggaat
aacactaacaaccacgacacaaggctgggtgtggggcacacacccttagt
acctgtacttgggggacagaggcaagtgaatctctgtgaactcaaggcca
gtctgatttacattgtgagttccaggcaagctagggctgcatcctgaaga
cccaatctaaaaaataacaaaagctttaagacctaaaagtaagagaaata
ctgaaatggaaaggaactctgctgacttcttttcttgcagccagtgttat
ttcacgccaaaaacaagaacacacacgcaaaaagcaaactatacatccat
atctttgatgacatagaatgtaaactttccaattaaagcctagcaagctg
aatgttagttacggcacattcagagatcatacaacaagtcagtaggattc
gttcaatgctccacacagatgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_32524108_32525301
seq2: B6Ng01-287P21.b_47_1242 (reverse)

seq1  GCACCATGTT-GAAGTAATGCGTCTACACACTCTTCATGGCCTGTCACTG  49
      |||| ||||| ||||| |||||||||||| |||||||||||| |||| ||
seq2  GCACAATGTTGGAAGTTATGCGTCTACAC-CTCTTCATGGCC-GTCATTG  48

seq1  CCTGCAAAAATAATTTGGGTGTATT---AAACACA-CTAT--GTGTGGGG  93
      |||   |||||| |   ||||||||   | ||||| ||||   |||||||
seq2  CCTTGCAAAATACT---GGTGTATTTTAACACACACCTATTGTTGTGGGG  95

seq1  AAGGGCACACGCATATAATGCATTTATGTTTAATTTTGGCTC-ACCCCTC  142
       |||||||||||||||||||||||||||||||  ||| |||| |||||||
seq2  -AGGGCACACGCATATAATGCATTTATGTTTA--TTTTGCTCAACCCCTC  142

seq1  -TGTGCAACGCTGTCCTTCCCCACTTGTCTTTGGCATCTACATTTGCTCC  191
       |||||||||||||| | ||||||||||| ||||||||||||||||||||
seq2  TTGTGCAACGCTGTCTTCCCCCACTTGTC-TTGGCATCTACATTTGCTCC  191

seq1  TTTGTTCAGTAGTGAGTATACACAGTCCGTGTGCCCATTGAGAACCGACA  241
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  -TTGTTCAGTAGTGAGTATACACAGTCCGTGTG-CCATTGAGAACCGACA  239

seq1  GCATAAGAGGTGTCCTGAAC-AGTAACGGAA-TTAGATTTAGTGTCACCA  289
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  GCATAAGAGGTGTCCTGAACAAGTAACGGAATTTAGATTTAGTGTCACCA  289

seq1  C-TGACAAAACGGCAATGATGTGATGGCTTA-TTTTTCATATATGCACTT  337
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTGACAAAACGGCAATGATGTGATGGCTTATTTTTTCATATATGCACTT  339

seq1  TTGTAATATAACTTTATATGTATTTAAATGAAAACCTTTTGTCTTAGTCA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATATAACTTTATATGTATTTAAATGAAAACCTTTTGTCTTAGTCA  389

seq1  AGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGCTGGAGAGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGCTGGAGAGG  439

seq1  AAAGGGTTTATTCAGCTTACATTTCCACATTGCTGCTCATCACCAAGGAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTTATTCAGCTTACATTTCCACATTGCTGCTCATCACCAAGGAA  489

seq1  GTCAGGACTGGAACTCAAGCAGGTCGGGAAGCAGGAGCTGATGCAGAGCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGACTGGAACTCAAGCAGGTCGGGAAGCAGGAGCTGATGCAGAGCC  539

seq1  ATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGCTCCCTTGCTCAGCC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGCTCCCTTGCTCAGCC  589

seq1  TGCTCTCTTATAGAACCCAGGACTACCAGCCCAGAGATGACACCACCCAC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTATAGAACCCAGGACTACCAGCCCAGAGATGACACCACCCAC  639

seq1  AAGGGGACCTCCCGGTTTGATCATTAATTGAGAAAATGCCTTGCAGCTGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACCTCCCGGTTTGATCATTAATTGAGAAAATGCCTTGCAGCTGG  689

seq1  ATCTCGTGGAGGCACTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGTGGAGGCACTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTC  739

seq1  CAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAGCTATGGTTGACAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAGCTATGGTTGACAT  789

seq1  TTTTAGTTACAAACTTTGATATATCTACTAAAATAGGGACCAAAAGTATT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTACAAACTTTGATATATCTACTAAAATAGGGACCAAAAGTATT  839

seq1  AGAATATTTAATACTTTAACAACAATTTAAGAGCAAAATATAGTGTACAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTAATACTTTAACAACAATTTAAGAGCAAAATATAGTGTACAT  889

seq1  GCCTATAATCCCAGCACTAAAGAGGGTGAGGTAGTGAGATTATGTTATGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAATCCCAGCACTAAAGAGGGTGAGGTAGTGAGATTATGTTATGG  939

seq1  AGGCCTGGATTATATACTCAAATGCTGTCTCAAAAAAAAAAAAAACCATT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGATTATATACTCAAATGCTGTCTCAAAAAAAAAAAAAACCATT  989

seq1  TAAAAATGATTGAAACGTACTGTCCATTTCCATCTTGAATATCTACTGCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGATTGAAACGTACTGTCCATTTCCATCTTGAATATCTACTGCA  1039

seq1  TTCTGTGGCTCTGCATTTCCTATTAATAACCGTAAGCATTCTGAATGACC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGCTCTGCATTTCCTATTAATAACCGTAAGCATTCTGAATGACC  1089

seq1  ATTTGTTGCTGTAAAGTAAAAGAAAATAATTTTAATATGTACAATATAAC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGCTGTAAAGTAAAAGAAAATAATTTTAATATGTACAATATAAC  1139

seq1  AAAACTGGAGTAAGCATATCTTTGAGTATATAATTTTGGAACCCTTTCAA  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAGTAAGCATATCTTTGAGTATATAATTTTGGAACCCTTTCAA  1189

seq1  TGAATTC  1194
      |||||||
seq2  TGAATTC  1196

seq1: chr14_32401414_32402532
seq2: B6Ng01-287P21.g_68_1191

seq1  GAATTCCAGACCATGTGGTCCCAGTGTCCCTAAGGCAAGGTGGGAGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCATGTGGTCCCAGTGTCCCTAAGGCAAGGTGGGAGGAGC  50

seq1  AGACTGGAGGAGAACTTCTGAGGGGAGAAGGGCAGGAGAGGAGGGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAGGAGAACTTCTGAGGGGAGAAGGGCAGGAGAGGAGGGAAAGA  100

seq1  GGAGGGTGTGTACAGCAGAAAAAGGGAGATGCTGGCTCCCAGATGTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTGTGTACAGCAGAAAAAGGGAGATGCTGGCTCCCAGATGTTGTC  150

seq1  CCGTGGTCTCTACCAGCTCCTCACTCGCTCCTTACCCCACCACATTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGTCTCTACCAGCTCCTCACTCGCTCCTTACCCCACCACATTAAAC  200

seq1  TGCTTAAAAGTTAACCATTAGAAATAGAATTATAAGCCAGATGGTGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAAAGTTAACCATTAGAAATAGAATTATAAGCCAGATGGTGGTGG  250

seq1  CCTACACTTCTAATCCCAGCACTCAGGAGGCAGGCAGAGTTTGAAGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACTTCTAATCCCAGCACTCAGGAGGCAGGCAGAGTTTGAAGCCAT  300

seq1  CCTGATTGAGAGACAGAGAGAGAGAGACAAAGAGAGACAGAGACAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTGAGAGACAGAGAGAGAGAGACAAAGAGAGACAGAGACAGACAG  350

seq1  AGACAGAGACAGAGATAAAGTATAAGCCAGGCTTGGTGCACGTTTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGACAGAGATAAAGTATAAGCCAGGCTTGGTGCACGTTTTTTAA  400

seq1  TTCCAACACTCAAGAGGCAGAGGCAGGCAGATCTCTGAGTTCAAAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACACTCAAGAGGCAGAGGCAGGCAGATCTCTGAGTTCAAAGTTCT  450

seq1  TGGTCTACAGAGTTTCAGGACAACCAGGGATACACTGAGAAATCCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTTTCAGGACAACCAGGGATACACTGAGAAATCCTGTCT  500

seq1  CAAAAAAACAAAACAAACAAACAAACAAAAAAAAAAACAAAAAAACCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACAAAACAAACAAACAAACAAAAAAAAAAACAAAAAAACCCAA  550

seq1  AACCAAAGAAAATTAAAGTGTAATAACTACCATAATGGATACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGAAAATTAAAGTGTAATAACTACCATAATGGATACACACACAC  600

seq1  CAATGTACACATATACACCTTACTAGATGAACGAACACTACAAAACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTACACATATACACCTTACTAGATGAACGAACACTACAAAACAAAA  650

seq1  AATGAAGGGAGTATACATAATAAATAAACAATAAGAAAGAAGAAAGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGGAGTATACATAATAAATAAACAATAAGAAAGAAGAAAGGAAT  700

seq1  AACACTAACAACCACGACACAAGGCTGGGTGTGGGGCACACACCCTTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAACAACCACGACACAAGGCTGGGTGTGGGGCACACACCCTTAGT  750

seq1  ACCTGTACTTGGGGGACAGAGGCAAGTGAATCTCTGTGAACTCAAGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTACTTGGGGGACAGAGGCAAGTGAATCTCTGTGAACTCAAGGCCA  800

seq1  GTCTGATTTACATTGTGAGTTCCAGGCAAGCTAGGGCTGCATCCTG-AGA  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTCTGATTTACATTGTGAGTTCCAGGCAAGCTAGGGCTGCATCCTGAAGA  850

seq1  CCCAATCTAAAAAATAACAAAAGCTTTAAGACCTAAAAGTAAGAGAAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCTAAAAAATAACAAAAGCTTTAAGACCTAAAAGTAAGAGAAATA  900

seq1  CTGAAATGG-AAGGAACTCTGCTGACTTCTTT--CTGCAGCCAGTGTTA-  945
      ||||||||| ||||||||||||||||||||||   |||||||||||||| 
seq2  CTGAAATGGAAAGGAACTCTGCTGACTTCTTTTCTTGCAGCCAGTGTTAT  950

seq1  TTCACGCC-AAAACA--GACACACACGC-AAAAGCAAACTATACATCCAT  991
      |||||||| ||||||   |||||||||| |||||||||||||||||||||
seq2  TTCACGCCAAAAACAAGAACACACACGCAAAAAGCAAACTATACATCCAT  1000

seq1  ATCTTTGATGACCATAG-ATGTAAAACTTCCCAATAAAGCCCTAGCAAGC  1040
      ||||||||||| ||||| |||| |||||| ||||| ||  ||||||||||
seq2  ATCTTTGATGA-CATAGAATGT-AAACTTTCCAATTAAAGCCTAGCAAGC  1048

seq1  TGAATG-TAGTAACGGCACATCCAGAAGATCATACAACAAGGTCAGGTAG  1089
      |||||| |||| ||||||||| ||| |||||||||||||| |||| ||||
seq2  TGAATGTTAGTTACGGCACATTCAG-AGATCATACAACAA-GTCA-GTAG  1095

seq1  GATTCGTCCATGGGCTCCACACAGATGCTC  1119
      ||||||| ||   |||||||||||||||||
seq2  GATTCGTTCA-ATGCTCCACACAGATGCTC  1124