BAC Information

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BAC

Clone NameB6Ng01-288B13
Chromosome14 (Build37)
Map Location 47,057,675 - 47,193,396
singlet/doubletdoublet
Overlap geneLOC100041754
Upstream genePlekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732
Downstream geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288B13.bB6Ng01-288B13.g
ACCGA085849GA085850
length57155
definitionB6Ng01-288B13.b B6Ng01-288B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,192,820 - 47,193,396)(47,057,675 - 47,057,729)
sequence
aacacttagcgctctttacagaactgtcagtaatgacggcaaccaggttg
ctgacatgtcttactgtttacaaaggatgagcccagagaggctgctggga
agacttgataagcccggctctgtctgatgctggcctctaaactagctgcc
tttgcttggctggctcaagaggcaagtatcaacagttgatctaaacccca
ggccagtacagataaaatggggctgctcagagttgccctggaaatggtaa
aaacagaaagagacaaaggaatgtccccctgccttgcatgtagatgcgtt
tcctctgtttcatgcattttacttaacatttgatgataaaatttctgatg
ctggtgttaaagtcatggccgattatcacgtctgacagtgtttcccaagt
ttgcacccctctatttctttagaaattctagtctatgctgtagttaagat
caaagtctttaggaggctgtgactttggaaggctgaggttatagctcaca
cagggcagacatacaaaggcatcctttgcctcctaagaagtctttcttct
ccctccctcccttcctccctc
agccaagagaacctgtgtgtaatagatactctagctggggcatgtgtgtg
tgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_47192820_47193396
seq2: B6Ng01-288B13.b_49_625 (reverse)

seq1  GAGGGAGGAAGGGAGGGAGGGAGAAGAAAGACTTCTTAGGAGGCAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGAAGGGAGGGAGGGAGAAGAAAGACTTCTTAGGAGGCAAAGGA  50

seq1  TGCCTTTGTATGTCTGCCCTGTGTGAGCTATAACCTCAGCCTTCCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGTATGTCTGCCCTGTGTGAGCTATAACCTCAGCCTTCCAAAGT  100

seq1  CACAGCCTCCTAAAGACTTTGATCTTAACTACAGCATAGACTAGAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTCCTAAAGACTTTGATCTTAACTACAGCATAGACTAGAATTTC  150

seq1  TAAAGAAATAGAGGGGTGCAAACTTGGGAAACACTGTCAGACGTGATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATAGAGGGGTGCAAACTTGGGAAACACTGTCAGACGTGATAAT  200

seq1  CGGCCATGACTTTAACACCAGCATCAGAAATTTTATCATCAAATGTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCATGACTTTAACACCAGCATCAGAAATTTTATCATCAAATGTTAAG  250

seq1  TAAAATGCATGAAACAGAGGAAACGCATCTACATGCAAGGCAGGGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCATGAAACAGAGGAAACGCATCTACATGCAAGGCAGGGGGACA  300

seq1  TTCCTTTGTCTCTTTCTGTTTTTACCATTTCCAGGGCAACTCTGAGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGTCTCTTTCTGTTTTTACCATTTCCAGGGCAACTCTGAGCAGC  350

seq1  CCCATTTTATCTGTACTGGCCTGGGGTTTAGATCAACTGTTGATACTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTATCTGTACTGGCCTGGGGTTTAGATCAACTGTTGATACTTGC  400

seq1  CTCTTGAGCCAGCCAAGCAAAGGCAGCTAGTTTAGAGGCCAGCATCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGCCAGCCAAGCAAAGGCAGCTAGTTTAGAGGCCAGCATCAGAC  450

seq1  AGAGCCGGGCTTATCAAGTCTTCCCAGCAGCCTCTCTGGGCTCATCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCGGGCTTATCAAGTCTTCCCAGCAGCCTCTCTGGGCTCATCCTTT  500

seq1  GTAAACAGTAAGACATGTCAGCAACCTGGTTGCCGTCATTACTGACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAGTAAGACATGTCAGCAACCTGGTTGCCGTCATTACTGACAGTT  550

seq1  CTGTAAAGAGCGCTAAGTGTTGAATTC  577
      |||||||||||||||||||||||||||
seq2  CTGTAAAGAGCGCTAAGTGTTGAATTC  577

seq1: chr14_47057675_47057729
seq2: B6Ng01-288B13.g_77_131

seq1  AGCCAAGAGAACCTGTGTGTAATAGATACTCTAGCTGGGGCATGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAGAACCTGTGTGTAATAGATACTCTAGCTGGGGCATGTGTGTG  50

seq1  TGTGT  55
      |||||
seq2  TGTGT  55