BAC Information

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BAC

Clone NameB6Ng01-288E13
Chromosome14 (Build37)
Map Location 43,212,286 - 43,309,294
singlet/doubletdoublet
Overlap geneLOC100042031, EG666318, EG546249, LOC100040863
Upstream geneEG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298
Downstream geneLOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288E13.bB6Ng01-288E13.g
ACCGA085987GA085988
length1,0991,087
definitionB6Ng01-288E13.b B6Ng01-288E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,308,198 - 43,309,294)(43,212,286 - 43,213,162)
sequence
gaattccttgtacttctcaatggtatcacttattgactgcgtcattttct
ccatatccaacattgtcttctcatgttgtgatttaatgatggtgaattca
atattcatcctgtggtagagcatggtccaaagagtaaatcatcctctgaa
ctaagcaatcaagtatcatgtgcaaaaaggctgtatctggaattcccaag
aaaattgaatgccacatccttgctccttccaactgggtcctattggtact
gattaaacttattatcttgggcagaggacagcagagcgaggggaccaaat
ggagatagttgaccctcaagaactcttaggtgagcccaaaggaatacact
agttctgtgaaatgtttctactagactgtcccacaggctttggtcctcag
ttttaaggcttttttttttcctcttagttttaaggcagggataatccttt
gttcatattgctacatgaattctcagagggcataactagtatataaagga
aaaggctttataacacttcctactccaggagaatcctatgtgacaccaag
ttaaacacagggaataaagaaccctgatgatcaatttgggcctctaaggg
ctcaacactatcatgccctacaaactgtccatcacacaaatcctcagacc
ccatcgaaggacccacaaccccagatcctgaacaaaacacacacaactaa
cttcacacacagaaaaaaaattaaaatgccaaataaatccaggtaggttc
catagactcagagtacaatgaataaaacaagagtaaagcagtaatggcct
gcagacattgcattcttacacaataaggcagctattgtgaccaggtcctt
ccagctgttgacagaaccaatcagactccaagcacgtcaagggcaagtac
aaagaggatgaccatagaacacacagcacttatctcatccaacaattaaa
taactgtcaagacttcttataatgaatgtgagagatgacacactccattc
atgggagaaaaatgtgggtcaacagagaagggccacaatacagtcacaga
tacagggccatattttaccctataagttcaatcagttattcatgtcaat
gaattccatgggcctatgtttaggagtctggggacagggacccacaaaat
cctggacagtgctggggtgcagagagttcacagcaggtttgaccctgcta
gcctgcaaggataacagggcaaggggttctcagaatcttagacatgcagg
cactgctagaagtctcagaggagctgagcatggaggaggccaacaggctg
agaactagcccggaaatcagggaatggggaattctggattagctcagagg
tgactagcccaggagtattgaggggccttcttttggagacttagatggca
aggctctgtaggcaaaggctttttctccatgtaaccacagttggtttgat
gagagagacagtctttggttgtaaactgtttatcgcttttcatggaaatg
aaagcataacatgtcttgaggttagactagaagttaagtaccttgtgagg
aaggaatgtccaggaatggaagcttattgactgaaccctaccatcttcta
ggtacctcattagcagggaaaaccttattctgttctaaatgaccacaggt
catgttcctatgtagagattttggtcccatgaaagaggcctgctaggaag
caggtgacacttttgccatatactgtgggtctgggacttccaacccactc
aaatttaccaaattctggacatggtagtctactgtcccaggtcttactta
gtctgagatttattgatatgaagaaacaccaggacatatgtttagtatgc
gggtctcagtgtctaccctccacactgacacactgtttctaacaaggcca
caactcctaacagtaccacccccatattcaagccaccacactccctctgc
aatctcccaagacattttacctcactctgtcctactgttttcctttttct
ccttcacaaattatgtgttctattaatttcttggaaattatcctccttat
aacccaacaatagatgcatttaccctttctatcaatacttgcagttttaa
tacacattcttctaagaacattccaatgttaccatccctcaataagacac
atcatgtggtacctgtcctttttgggtgggtggttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43308198_43309294
seq2: B6Ng01-288E13.b_48_1146 (reverse)

seq1  ATTGACATGAAT-ACTGATTTGAAC-TATA-GGTAAAATTATGCCCTGTA  47
      |||||||||||| ||||| |||||| |||| ||||||||   ||||||||
seq2  ATTGACATGAATAACTGA-TTGAACTTATAGGGTAAAATATGGCCCTGTA  49

seq1  TCCTGTTGACTGTATTGTG--CCCTCTCTGTTGACCCACA-TTTTCTCCC  94
      | ||| |||||||||||||  || |||||||||||||||| |||||||||
seq2  T-CTG-TGACTGTATTGTGGCCCTTCTCTGTTGACCCACATTTTTCTCCC  97

seq1  ATGAATGGAGTGTGTCATCTCTCACATTCATTATAAGAAGTCTTGACAGT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGAGTGTGTCATCTCTCACATTCATTATAAGAAGTCTTGACAGT  147

seq1  TATTTAATTGTTGGATGAGATAAGTGCTGTGTGTTCTATGGTCATCCTCT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATTTAATTGTTGGATGAGATAAGTGCTGTGTGTTCTATGGTCATCCTC-  196

seq1  TTTGTACTTGCCCTTGACGTGCTTGGAGTCTGATTGGTTCTGTCAACAGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTTGCCCTTGACGTGCTTGGAGTCTGATTGGTTCTGTCAACAGC  246

seq1  TGGAAGGACCTGGTCACAATAGCTGCCTTATTGTGTAAGAATGCAATGTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGACCTGGTCACAATAGCTGCCTTATTGTGTAAGAATGCAATGTC  296

seq1  TGCAGGCCATTACTGCTTTACTCTTGTTTTATTCATTGTACTCTGAGTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCCATTACTGCTTTACTCTTGTTTTATTCATTGTACTCTGAGTCT  346

seq1  ATGGAACCTACCTGGATTTATTTGGCATTTTAATTTTTTTTCTGTGTGTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCTACCTGGATTTATTTGGCATTTTAATTTTTTTTCTGTGTGTG  396

seq1  AAGTTAGTTGTGTGTGTTTTGTTCAGGATCTGGGGTTGTGGGTCCTTCGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGTTGTGTGTGTTTTGTTCAGGATCTGGGGTTGTGGGTCCTTCGA  446

seq1  TGGGGTCTGAGGATTTGTGTGATGGACAGTTTGTAGGGCATGATAGTGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTGAGGATTTGTGTGATGGACAGTTTGTAGGGCATGATAGTGTT  496

seq1  GAGCCCTTAGAGGCCCAAATTGATCATCAGGGTTCTTTATTCCCTGTGTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTAGAGGCCCAAATTGATCATCAGGGTTCTTTATTCCCTGTGTT  546

seq1  TAACTTGGTGTCACATAGGATTCTCCTGGAGTAGGAAGTGTTATAAAGCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGGTGTCACATAGGATTCTCCTGGAGTAGGAAGTGTTATAAAGCC  596

seq1  TTTTCCTTTATATACTAGTTATGCCCTCTGAGAATTCATGTAGCAATATG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTATATACTAGTTATGCCCTCTGAGAATTCATGTAGCAATATG  646

seq1  AACAAAGGATTATCCCTGCCTTAAAACTAAGAGGAAAAAAAAAAGCCTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGATTATCCCTGCCTTAAAACTAAGAGGAAAAAAAAAAGCCTTA  696

seq1  AAACTGAGGACCAAAGCCTGTGGGACAGTCTAGTAGAAACATTTCACAGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGGACCAAAGCCTGTGGGACAGTCTAGTAGAAACATTTCACAGA  746

seq1  ACTAGTGTATTCCTTTGGGCTCACCTAAGAGTTCTTGAGGGTCAACTATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGTATTCCTTTGGGCTCACCTAAGAGTTCTTGAGGGTCAACTATC  796

seq1  TCCATTTGGTCCCCTCGCTCTGCTGTCCTCTGCCCAAGATAATAAGTTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGGTCCCCTCGCTCTGCTGTCCTCTGCCCAAGATAATAAGTTTA  846

seq1  ATCAGTACCAATAGGACCCAGTTGGAAGGAGCAAGGATGTGGCATTCAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTACCAATAGGACCCAGTTGGAAGGAGCAAGGATGTGGCATTCAAT  896

seq1  TTTCTTGGGAATTCCAGATACAGCCTTTTTGCACATGATACTTGATTGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGGAATTCCAGATACAGCCTTTTTGCACATGATACTTGATTGCT  946

seq1  TAGTTCAGAGGATGATTTACTCTTTGGACCATGCTCTACCACAGGATGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGAGGATGATTTACTCTTTGGACCATGCTCTACCACAGGATGAA  996

seq1  TATTGAATTCACCATCATTAAATCACAACATGAGAAGACAATGTTGGATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATTCACCATCATTAAATCACAACATGAGAAGACAATGTTGGATA  1046

seq1  TGGAGAAAATGACGCAGTCAATAAGTGATACCATTGAGAAGTACAAGGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAATGACGCAGTCAATAAGTGATACCATTGAGAAGTACAAGGAA  1096

seq1  TTC  1097
      |||
seq2  TTC  1099

seq1: chr14_43212286_43213162
seq2: B6Ng01-288E13.g_261_1156

seq1  AACAGGCTGAGAACTAGCCCGGAAATCAGGGAATGGGGAATTCTGGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTGAGAACTAGCCCGGAAATCAGGGAATGGGGAATTCTGGATTA  50

seq1  GCTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTTTTGGAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTTTTGGAGACT  100

seq1  TAGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCACAGT  150

seq1  TGGTTTGATGAGAGAGACAGTCTTTGGTTGTAAACTGTTTATCGCTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGATGAGAGAGACAGTCTTTGGTTGTAAACTGTTTATCGCTTTTC  200

seq1  ATGGAAATGAAAGCATAACATGTCTTGAGGTTAGACTAGAAGTTAAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATGAAAGCATAACATGTCTTGAGGTTAGACTAGAAGTTAAGTAC  250

seq1  CTTGTGAGGAAGGAATGTCCAGGAATGGAAGCTTATTGACTGAACCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGGAAGGAATGTCCAGGAATGGAAGCTTATTGACTGAACCCTAC  300

seq1  CATCTTCTAGGTACCTCATTAGCAGGGAAAACCTTATTCTGTTCTAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTAGGTACCTCATTAGCAGGGAAAACCTTATTCTGTTCTAAATG  350

seq1  ACCACAGGTCATGTTCCTATGTAGAGATTTTGGTCCCATGAAAGAGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGTCATGTTCCTATGTAGAGATTTTGGTCCCATGAAAGAGGCCT  400

seq1  GCTAGGAAGCAGGTGACACTTTTGCCATATACTGTGGGTCTGGGACTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAGCAGGTGACACTTTTGCCATATACTGTGGGTCTGGGACTTCC  450

seq1  AACCCACTCAAATTTACCAAATTCTGGACATGGTAGTCTACTGTCCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACTCAAATTTACCAAATTCTGGACATGGTAGTCTACTGTCCCAGG  500

seq1  TCTTACTTAGTCTGAGATTTATTGATATGAAGAAACACCAGGACATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTAGTCTGAGATTTATTGATATGAAGAAACACCAGGACATATGT  550

seq1  TTAGTATGCGGGTCTCAGTGTCTACCCTCCACACTGACACACTGTTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATGCGGGTCTCAGTGTCTACCCTCCACACTGACACACTGTTTCTA  600

seq1  ACAAGGCCACAACTCCTAACAGTACCACCCCCATATTCAAGCCACCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCCACAACTCCTAACAGTACCACCCCCATATTCAAGCCACCACAC  650

seq1  T-CCTCTGCAATCTCCCAAGACA-TTTACCTCACTCTGTCCTACTGTTTT  698
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCCTCTGCAATCTCCCAAGACATTTTACCTCACTCTGTCCTACTGTTTT  700

seq1  CCTTTTTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTG--AAATAT  746
      |||||||||||||||||||||||||||||||||| |||||||  || |||
seq2  CCTTTTTCTCCTTCACAAATTATGTGTTCTATTAATTTCTTGGAAATTAT  750

seq1  CCTCC-TATAACCCAACAATAG-TGCA-TTACC--TTCTATCAATAC-TG  790
      ||||| |||||||||||||||| |||| |||||  |||||||||||| ||
seq2  CCTCCTTATAACCCAACAATAGATGCATTTACCCTTTCTATCAATACTTG  800

seq1  CAGTTTAAATACACAT--CTCTA--GACATT-CAATGTTACCAT-CCTC-  833
      |||||| |||||||||   ||||   ||||| |||||||||||| |||| 
seq2  CAGTTTTAATACACATTCTTCTAAGAACATTCCAATGTTACCATCCCTCA  850

seq1  ATAAGACACATCATGTGGTACTTGT-CTTTTTGGGTGTG-GGTTAT  877
      ||||||||||||||||||||| ||| ||||||||||| | ||||||
seq2  ATAAGACACATCATGTGGTACCTGTCCTTTTTGGGTGGGTGGTTAT  896