BAC Information

Click to search

BAC

Clone NameB6Ng01-288G07
Chromosome14 (Build37)
Map Location 21,048,130 - 21,049,189
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5
Downstream geneLOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288G07.bB6Ng01-288G07.g
ACCGA086066GA086067
length1,060968
definitionB6Ng01-288G07.b B6Ng01-288G07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtataagggatacacagcccattttcggggagccccagtctaa
ggtagacgtggcctgtcctcagggagcaccgctctgacaggatggccctg
gccctcaggagcccctattctgaggaaatagtttccttgggcctctgaaa
aggctcctgtctacttgctccaggaacttctgcctctggtctggattcct
gtaaacagaggtggggagtcccagcagccaaagcgctttttaatcgcctt
tttttattgtctttctgtgggtgactcatccacgggaaaatcacagctct
ggagtgaaactggtgagcctgagatgcaaacggagagggacagcaatgag
tgaagattattgacacagtctgggtggctgctgggcctagttcaactggt
caccacagccgctggcaccagagtcacaagcagagaggtgagctgagatc
agaggacacccagtccgcaagaagccccatagcagggctgtctctagatt
caggcaggagctgtgcacagtcacagaaatccaggaacgaggcctggtga
gtggctgtgggtcaagccaccctgtgggaacatatgcacaaacagagaga
gcctcatacaacatccctgtctgctctcttgagccatacctggccccttc
tgagcctgccatcgcattccagtctgagttgggattcttgtaatgtttta
tggtcttacctgaacctggaagcctcaagagcaggtgctgcctagagcag
aggagacctggttctggaggaaataagacggggtttgggggtatgcctca
tttggcagaatgtttgccttgcatgcatgggaccatgggttttgttcccc
agcatgacatacaaagtgggtatttgtgggtaaatatctgtgagcccagt
aactgatgagatggagtcagaagagtcaaccttaaaggtcatcttgacag
tagcctctgtgtgaacatgtgacccttgatgtggcagtgggggacagagg
agaggaaagaccgagaatgacagggtccaaacctccattggtctcagcag
caagtgtgtg
gaattctttctttagctttatacccaaatttttaatggggttatttgaat
ttctggagtccagcttcttgagctctttctttgtatatattggatattag
tcccctatctgatttaggattggtaaaaatcctttcccaatctgttggtg
gtctttttctcttatttacagtgtcttttgccttacaggagctttgcaat
ttcatgaggtcccatgaaattgaattgtcatttcttgatcttacagcaca
agccattgctgttctgtttaggaatttttccccagtgcccatatcttcga
ggcttttccccactttctcctctataaatttcagtgtctctggttttatg
tggagttctttgatccacttagatttgaccttagtacaaggagataggaa
tggatcaattcgcattcttctacatgttaaccgccagttgtgccagcacc
atttgttgaaaatgcatctttttttcactggatggttttagctcccttgt
caaagatcaaatgaccataggtgtgtgggttcatttctgggtcttcaatt
ctattccattgatctacctgtctgtcgatgtaccagtaccatgcagtttt
tatcacaattgctctatagtacagcttgaggtcagtcatggtaattccac
cagaggttctttttattgttgagaatagtttttgctatcctaggtttttt
tattattccagatgaatttgcaaattgcccttttctaactcagggaagaa
ttgagttggaattttgatgggaattgcattgaatctgtagattgcttttg
gcaggatagcctttttgacttatatttaatcctgccaatccatgagcatg
gcagatattttccatctttctgagaatcttcttttaatttctttcttcgg
aagatttgaagttctcttcaagcaagctctcctcttgcaagggaaaagtt
gcacagagatctggcgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21048130_21049189
seq2: B6Ng01-288G07.b_47_1106 (reverse)

seq1  CACACACTTGCTGCTGAGACAATTGGAGGTTTGGACCCTGTCTTTCTCTG  50
      |||||||||||||||||||| | ||||||||||||||||||| ||||| |
seq2  CACACACTTGCTGCTGAGACCAATGGAGGTTTGGACCCTGTCATTCTC-G  49

seq1  TTCTTTCCTCTCCTCTTGTCCCCACTGCCCACATC-AGGGTCACATGTTT  99
       |||||||||||||||   |||||||| ||||||| ||||||||||| ||
seq2  GTCTTTCCTCTCCTCTGTCCCCCACTG-CCACATCAAGGGTCACATG-TT  97

seq1  CACACAGAGGCTACTGTCAAGAATGACCTTAAGGTTTGACTCTTCTGACT  149
      ||||||||||||||||||||| |||||||| | | |||||||||||||||
seq2  CACACAGAGGCTACTGTCAAG-ATGACCTTTAAGGTTGACTCTTCTGACT  146

seq1  CCATCTCCTCAGTT-CTGGGCTCACAGATATTTACCCAC-AATACCCACT  197
      ||||||| |||||| |||||||||||||||||||||||| ||||||||||
seq2  CCATCTCATCAGTTACTGGGCTCACAGATATTTACCCACAAATACCCACT  196

seq1  TTGTATGTCATGCTGGGGAAC-AAACCCATGGTCCCATGCATGCAAGGCA  246
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGTATGTCATGCTGGGGAACAAAACCCATGGTCCCATGCATGCAAGGCA  246

seq1  AACATTCTGCCAAATGAGGCATACCCCCAAACCCCGTCTTATTTCCTCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTGCCAAATGAGGCATACCCCCAAACCCCGTCTTATTTCCTCCA  296

seq1  GAACCAGGTCTCCTCTGCTCTAGGCAGCACCTGCTCTTGAGGCTTCCAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGTCTCCTCTGCTCTAGGCAGCACCTGCTCTTGAGGCTTCCAGG  346

seq1  TTCAGGTAAGACCATAAAACATTACAAGAATCCCAACTCAGACTGGAATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTAAGACCATAAAACATTACAAGAATCCCAACTCAGACTGGAATG  396

seq1  CGATGGCAGGCTCAGAAGGGGCCAGGTATGGCTCAAGAGAGCAGACAGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGCAGGCTCAGAAGGGGCCAGGTATGGCTCAAGAGAGCAGACAGGG  446

seq1  ATGTTGTATGAGGCTCTCTCTGTTTGTGCATATGTTCCCACAGGGTGGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTATGAGGCTCTCTCTGTTTGTGCATATGTTCCCACAGGGTGGCT  496

seq1  TGACCCACAGCCACTCACCAGGCCTCGTTCCTGGATTTCTGTGACTGTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCACAGCCACTCACCAGGCCTCGTTCCTGGATTTCTGTGACTGTGC  546

seq1  ACAGCTCCTGCCTGAATCTAGAGACAGCCCTGCTATGGGGCTTCTTGCGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCTGCCTGAATCTAGAGACAGCCCTGCTATGGGGCTTCTTGCGG  596

seq1  ACTGGGTGTCCTCTGATCTCAGCTCACCTCTCTGCTTGTGACTCTGGTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGTCCTCTGATCTCAGCTCACCTCTCTGCTTGTGACTCTGGTGC  646

seq1  CAGCGGCTGTGGTGACCAGTTGAACTAGGCCCAGCAGCCACCCAGACTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGCTGTGGTGACCAGTTGAACTAGGCCCAGCAGCCACCCAGACTGT  696

seq1  GTCAATAATCTTCACTCATTGCTGTCCCTCTCCGTTTGCATCTCAGGCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAATCTTCACTCATTGCTGTCCCTCTCCGTTTGCATCTCAGGCTC  746

seq1  ACCAGTTTCACTCCAGAGCTGTGATTTTCCCGTGGATGAGTCACCCACAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTCACTCCAGAGCTGTGATTTTCCCGTGGATGAGTCACCCACAG  796

seq1  AAAGACAATAAAAAAAGGCGATTAAAAAGCGCTTTGGCTGCTGGGACTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAATAAAAAAAGGCGATTAAAAAGCGCTTTGGCTGCTGGGACTCC  846

seq1  CCACCTCTGTTTACAGGAATCCAGACCAGAGGCAGAAGTTCCTGGAGCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTGTTTACAGGAATCCAGACCAGAGGCAGAAGTTCCTGGAGCAA  896

seq1  GTAGACAGGAGCCTTTTCAGAGGCCCAAGGAAACTATTTCCTCAGAATAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGGAGCCTTTTCAGAGGCCCAAGGAAACTATTTCCTCAGAATAG  946

seq1  GGGCTCCTGAGGGCCAGGGCCATCCTGTCAGAGCGGTGCTCCCTGAGGAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCTGAGGGCCAGGGCCATCCTGTCAGAGCGGTGCTCCCTGAGGAC  996

seq1  AGGCCACGTCTACCTTAGACTGGGGCTCCCCGAAAATGGGCTGTGTATCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACGTCTACCTTAGACTGGGGCTCCCCGAAAATGGGCTGTGTATCC  1046

seq1  CTTATACTGAATTC  1060
      ||||||||||||||
seq2  CTTATACTGAATTC  1060