BAC Information

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BAC

Clone NameB6Ng01-288H12
Chromosome14 (Build37)
Map Location 21,211,690 - 21,399,551
singlet/doubletdoublet
Overlap geneMrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54
Upstream geneLOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9
Downstream geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288H12.bB6Ng01-288H12.g
ACCGA086124GA086125
length1,150352
definitionB6Ng01-288H12.b B6Ng01-288H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,398,416 - 21,399,551)(21,211,690 - 21,212,041)
sequence
gaattcactctgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgcctcccaagtgctagggttaaaggcgtgtgccaccactgcccgcca
gatattcttatatatactacaaaaatataaatcatttgtaaacatttaaa
aatagtaatgaaggtgggggatgtagttcagtggttccctaaaatgtgcc
agtctttgtgtttgattcctgcatgggaacaaaaggaaagtaattctgct
tacagttgctaaaccagtaagtggtttgctattgcaagtgctgtctttac
tggtttgtatgtgtttcccaaaatcaaaagaggtctatacattttgatga
gtcttttctgttatttcataattttctttgaatatttattttattgggct
gaggagatggctccatggttaagagcagtggctgctcttccagaggaccc
agattcaatttccagcctgcacatggcagctcacaattatctgtaactcc
agttttaggagatctgacaccctcatacagataaacatgcaggcaaaaaa
acaatgcatacaaagtaaaaataaataaaaatcttaaaattattatttta
tgtgtatgagtgtttttcctacatgaatgtatgtgcaccatgtatgttcc
tggcgctcttattggtcagaagagggtatcaaatcccctggaactggagt
tacaaatggttgtaagccattttaggttacttctaaattttacttattta
ttttgattcttgcatttcttgacaaggtctttgttgggtctcatattcaa
gatacccttactgcagcctcccatgttctggcattgcaggtgtgctgtac
tgcagctggcttttattgatttgtttatttttttaagattttgaggtaag
ggtcttggtatgttggccctaggcagttctgagactcctgagctcatgtg
ggcctcccttccccaagggtctccattggtaagacttacaggtgcatgcc
acttgcacagaggtacttttaaatgagtaggagtttttttttcttccact
tttcatgcattttattggatcaaactagggtaatttaactgtggttattt
ccaaggttctgatttttgctggacactcatccttttggtatgaagcattt

ccagaaatggcttctggccccaggcgccccatatgaacttaggccacaat
atctcaccctatgccttgttggttagcaactagtccggactgaaaccaac
cagccactatataggctctgactggctggcctcaatccaggccaagttaa
gaagccaactgagaccctataggtggaacaacaatatgaactaaccagta
cccaggagctcttgtctctagctgcatatgtatcaaaagatggcctagtc
ggccatcactggaaagagaggcccattggacttgcaaactttatatgccc
cagtacaggggtacgccagggccaaaaagggggagtgggtgggtagggga
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21398416_21399551
seq2: B6Ng01-288H12.b_43_1192 (reverse)

seq1  AAATGCTCAATTACCAAAAAGATGA-TGT-CAGCAAAATTCAGAACCTGG  48
      |||||||  | |||||||| ||||| ||| |||||||| ||||||||| |
seq2  AAATGCTTCA-TACCAAAAGGATGAGTGTCCAGCAAAAATCAGAACCTTG  49

seq1  GAAATACACA-AGTTAAATTA-CCTAGTTTTGAACC-ATAAATTGCATGG  95
      ||||||  || |||||||||| ||||| ||||| || ||||| ||||| |
seq2  GAAATAACCACAGTTAAATTACCCTAG-TTTGATCCAATAAAATGCAT-G  97

seq1  AAAAGTGGAAG-AAAAAAAACCCCTACTCA-TTAAAAGTACCCTCTGTGC  143
      ||||||||||| ||||||||| |||||||| ||||||||| |||||||||
seq2  AAAAGTGGAAGAAAAAAAAACTCCTACTCATTTAAAAGTA-CCTCTGTGC  146

seq1  -AGTGGCATGCACCTGT-AGTC-TACCAATGGAGACCC-TGGGGAA-GGA  188
       |||||||||||||||| |||| ||||||||||||||| ||||||| |||
seq2  AAGTGGCATGCACCTGTAAGTCTTACCAATGGAGACCCTTGGGGAAGGGA  196

seq1  GGCCCACATGAGCTCAGGAGTCTCAGAACTGCCTA-GGCCAACATACCAA  237
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCCCACATGAGCTCAGGAGTCTCAGAACTGCCTAGGGCCAACATACCAA  246

seq1  GACCC-TACCTCAAAATCTT-AAAAAATAAACAAATCAAT-AAAGCCAGC  284
      ||||| |||||||||||||| ||||||||||||||||||| |||||||||
seq2  GACCCTTACCTCAAAATCTTAAAAAAATAAACAAATCAATAAAAGCCAGC  296

seq1  TGCAGTACAGCACACCTGCAATGCCAGAACATGGGAGGCTGCAGTAAGGG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTACAGCACACCTGCAATGCCAGAACATGGGAGGCTGCAGTAAGGG  346

seq1  TATCTTGAATATGAGACCCAAC-AAGACCTTGTCAAGAAATGCAAGAATC  383
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATCTTGAATATGAGACCCAACAAAGACCTTGTCAAGAAATGCAAGAATC  396

seq1  AAAATAAATAAGTAAAATTTAGAAGTAACCTAAAATGGCTTACAACCATT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAAGTAAAATTTAGAAGTAACCTAAAATGGCTTACAACCATT  446

seq1  TGTAACTCCAGTTCCAGGGGATTTGATACCCTCTTCTGACCAATAAGAGC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCCAGTTCCAGGGGATTTGATACCCTCTTCTGACCAATAAGAGC  496

seq1  GCCAGGAACATACATGGTGCACATACATTCATGTAGGAAAAACACTCATA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAACATACATGGTGCACATACATTCATGTAGGAAAAACACTCATA  546

seq1  CACATAAAATAATAATTTTAA-ATTTTTATTTATTTTTACTTTGTATGCA  582
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACATAAAATAATAATTTTAAGATTTTTATTTATTTTTACTTTGTATGCA  596

seq1  TTGTTTTTTTGCCTGCATGTTTATCTGTATGAGGGTGTCAGATCTCCTAA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTGCCTGCATGTTTATCTGTATGAGGGTGTCAGATCTCCTAA  646

seq1  AACTGGAGTTACAGATAATTGTGAGCTGCCATGTGCAGGCTGGAAATTGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGTTACAGATAATTGTGAGCTGCCATGTGCAGGCTGGAAATTGA  696

seq1  ATCTGGGTCCTCTGGAAGAGCAGCCACTGCTCTTAACCATGGAGCCATCT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTCCTCTGGAAGAGCAGCCACTGCTCTTAACCATGGAGCCATCT  746

seq1  CCTCAGCCCAATAAAATAAATATTCAAAGAAAATTATGAAATAACAGAAA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCCAATAAAATAAATATTCAAAGAAAATTATGAAATAACAGAAA  796

seq1  AGACTCATCAAAATGTATAGACCTCTTTTGATTTTGGGAAACACATACAA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCATCAAAATGTATAGACCTCTTTTGATTTTGGGAAACACATACAA  846

seq1  ACCAGTAAAGACAGCACTTGCAATAGCAAACCACTTACTGGTTTAGCAAC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAAAGACAGCACTTGCAATAGCAAACCACTTACTGGTTTAGCAAC  896

seq1  TGTAAGCAGAATTACTTTCCTTTTGTTCCCATGCAGGAATCAAACACAAA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCAGAATTACTTTCCTTTTGTTCCCATGCAGGAATCAAACACAAA  946

seq1  GACTGGCACATTTTAGGGAACCACTGAACTACATCCCCCACCTTCATTAC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCACATTTTAGGGAACCACTGAACTACATCCCCCACCTTCATTAC  996

seq1  TATTTTTAAATGTTTACAAATGATTTATATTTTTGTAGTATATATAAGAA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAATGTTTACAAATGATTTATATTTTTGTAGTATATATAAGAA  1046

seq1  TATCTGGCGGGCAGTGGTGGCACACGCCTTTAACCCTAGCACTTGGGAGG  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGCGGGCAGTGGTGGCACACGCCTTTAACCCTAGCACTTGGGAGG  1096

seq1  CAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  1146

seq1  ATTC  1136
      ||||
seq2  ATTC  1150

seq1: chr14_21211690_21212041
seq2: B6Ng01-288H12.g_73_424

seq1  CCAGAAATGGCTTCTGGCCCCAGGCGCCCCATATGAACTTAGGCCACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGGCTTCTGGCCCCAGGCGCCCCATATGAACTTAGGCCACAAT  50

seq1  ATCTCACCCTATGCCTTGTTGGTTAGCAACTAGTCCGGACTGAAACCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCCTATGCCTTGTTGGTTAGCAACTAGTCCGGACTGAAACCAAC  100

seq1  CAGCCACTATATAGGCTCTGACTGGCTGGCCTCAATCCAGGCCAAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTATATAGGCTCTGACTGGCTGGCCTCAATCCAGGCCAAGTTAA  150

seq1  GAAGCCAACTGAGACCCTATAGGTGGAACAACAATATGAACTAACCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAACTGAGACCCTATAGGTGGAACAACAATATGAACTAACCAGTA  200

seq1  CCCAGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTC  250

seq1  GGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCC  300

seq1  CAGTACAGGGGTACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGGGGTACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGA  350

seq1  GT  352
      ||
seq2  GT  352