BAC Information

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BAC

Clone NameB6Ng01-288J17
Chromosome14 (Build37)
Map Location 108,421,931 - 108,423,060
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754
Downstream geneLOC668757, EG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288J17.bB6Ng01-288J17.g
ACCGA086227GA086228
length9751,128
definitionB6Ng01-288J17.b B6Ng01-288J17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttagggtcacttatatatactatcatatcatctgtaaaaagtga
tattttgacttcttcctttccaatttgtatccccttgatctccttttctt
ctctaattgctcttgctaggacttcaagtgcaatgtgaataagtagggag
aaagtgggcagccttgtctagtccctgattttagtgggattgcttccagc
ttctcaacatttactgtgatgttggctactcgtttgttgtagattgcttt
tatcatgttaagtatgggccttgaattcctgatctttccaagactgttat
catgaatgggtgttggattttgtcaaatgctttctcagcatctaatgaga
tgatcatatggtttttgtctttgagtttgtttatatagtggattatgttg
atggacttccatatagtaaaccatccctgcattcctgggatgaagcctac
ttgaccatggtggatgatcgttttgatgtgttcttggattcagttcgtga
gaattttattgagtatttttgcattgatatttataaatgaaactggtctg
aagttctcttttttgttgggtctttgtgtggtttaggtatcagagtaaga
atttattcttcatagaatgaatttggtagactaccttctttttctatttt
atggaatattttgaggagagttgggattaggtctcctttgaaggcctgat
agacgtcttcactaaaccaatttggttctgggcttttttttttttttttt
ttttttttttggttgggaagactataaaatgaatacttcctattggtata
ggggaaaatgggactctttagatagttaatctgatcatgatttaactttg
gtacctggaatcttgtctagaaattttctatttcatctaaggtttccagt
tttgttgagtaggatgtgataatattttgggatttcctcaagtctattgt
tatgtcttcccttttattctgattt

gaattcaaaccctcccatatacacttccttgatccttttcatggaatctt
ttttcattgattcttattacacatatgcatatctgtaaatacatttttac
accttgagctagacaaacaatactgtagacctgctaatatagatgggaag
tagaaggcttcatcttatatgaattctggacaagtaagaaattccaagag
tattagaagaaatattctgcctcaaagaaaaacacactaattggttgtct
aaaacttaatttgcctgtgttgaaaatcatggctttgaccattttacagt
atcaatcatgaattcccttctaaaagacaagtttcacatataatcaaatg
aatagttagttaccctcataaatagtcctggtagtgttacttcagaggtc
acatcttgcctagcaggttgggcatgcaactcttgggttctgttctgggg
aagactactaatgtttttatcccaagtagtttttacagcaggtcctagct
aaatgaatattaagcaaagataaagattcttgtgatattttaaacagaaa
aattgtcagaaagtaccaagattctcagtatagtcacataagtatttaga
atgcactaagtagtcaattatacaaacattcagttgcaatattaagatct
tgttgtaggcttttctttccctggggctcttaatttgcacttgaaaaaaa
tcaggaggaatttacaagagcagagtatagatgacaacctaggattatta
cagtgacatgatgttctctctggtttccaaaggaccatgtagccagccta
cagttttgataagcaacacaatgcattcacagtgtagacatattcagtgt
tttggttttttgttttgttttgtttttttaccaagaagatttacagtctc
cttgggattaattcttaaaaattgttagctggattgtaatcttgtaacca
tccaggtctttcagaaaatcatcattcttcttggagccagacatacattt
cattctcaacacatttcctttgatattaaccagactctacagattggttc
gtgtccaaatgctggtggttatgaggaaaatagttatggcctattccagg
cctatttaacacaaaggcatatccacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_108421931_108423060
seq2: B6Ng01-288J17.g_65_1192 (reverse)

seq1  TGGTGTGTGATATG-CTTTGTGTTAAATAG--CTGG-ATA-GCCATTAAA  45
      |||||   |||||| |||||||||||||||  |||| ||| |||||  ||
seq2  TGGTG---GATATGCCTTTGTGTTAAATAGGCCTGGAATAGGCCAT--AA  45

seq1  CTA-TTTCCTCATAACCACCAGCATTTGGGACACGAAACAATCTGTAGAG  94
      ||| ||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  CTATTTTCCTCATAACCACCAGCATTT-GGACACGAACCAATCTGTAGAG  94

seq1  TTCTGGTTAATTATCAAAGG-AATGTGTTGAGAATGAATTGTATGTCTGG  143
       ||||||||| ||||||||| ||||||||||||||||| |||||||||||
seq2  -TCTGGTTAA-TATCAAAGGAAATGTGTTGAGAATGAAATGTATGTCTGG  142

seq1  CTCCAAGAAGAATGATGATTTTCCTGAAAGACCTGGATGGTTACAAGATT  193
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCCAAGAAGAATGATGATTTT-CTGAAAGACCTGGATGGTTACAAGATT  191

seq1  ACAATCCAGCTAACAATTTTTAAGAATTAATCCCAAGGAGACTGTAAATC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCAGCTAACAATTTTTAAGAATTAATCCCAAGGAGACTGTAAATC  241

seq1  TTCTTGGTAAAAAAACAAAACAAAACAAAAAACCAAAACACTGAATATGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTAAAAAAACAAAACAAAACAAAAAACCAAAACACTGAATATGT  291

seq1  CTACACTGTGAATGCATTGTGTTGCTTATCAAAACTGTAGGCTGGCTACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGTGAATGCATTGTGTTGCTTATCAAAACTGTAGGCTGGCTACA  341

seq1  TGGTCCTTTGGAAACCAGAGAGAACATCATGTCACTGTAATAATCCTAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTTTGGAAACCAGAGAGAACATCATGTCACTGTAATAATCCTAGG  391

seq1  TTGTCATCTATACTCTGCTCTTGTAAATTCCTCCTGATTTTTTTCAAGTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCTATACTCTGCTCTTGTAAATTCCTCCTGATTTTTTTCAAGTG  441

seq1  CAAATTAAGAGCCCCAGGGAAAGAAAAGCCTACAACAAGATCTTAATATT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAAGAGCCCCAGGGAAAGAAAAGCCTACAACAAGATCTTAATATT  491

seq1  GCAACTGAATGTTTGTATAATTGACTACTTAGTGCATTCTAAATACTTAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGAATGTTTGTATAATTGACTACTTAGTGCATTCTAAATACTTAT  541

seq1  GTGACTATACTGAGAATCTTGGTACTTTCTGACAATTTTTCTGTTTAAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATACTGAGAATCTTGGTACTTTCTGACAATTTTTCTGTTTAAAA  591

seq1  TATCACAAGAATCTTTATCTTTGCTTAATATTCATTTAGCTAGGACCTGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAAGAATCTTTATCTTTGCTTAATATTCATTTAGCTAGGACCTGC  641

seq1  TGTAAAAACTACTTGGGATAAAAACATTAGTAGTCTTCCCCAGAACAGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAACTACTTGGGATAAAAACATTAGTAGTCTTCCCCAGAACAGAA  691

seq1  CCCAAGAGTTGCATGCCCAACCTGCTAGGCAAGATGTGACCTCTGAAGTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGTTGCATGCCCAACCTGCTAGGCAAGATGTGACCTCTGAAGTA  741

seq1  ACACTACCAGGACTATTTATGAGGGTAACTAACTATTCATTTGATTATAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACCAGGACTATTTATGAGGGTAACTAACTATTCATTTGATTATAT  791

seq1  GTGAAACTTGTCTTTTAGAAGGGAATTCATGATTGATACTGTAAAATGGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTTGTCTTTTAGAAGGGAATTCATGATTGATACTGTAAAATGGT  841

seq1  CAAAGCCATGATTTTCAACACAGGCAAATTAAGTTTTAGACAACCAATTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATGATTTTCAACACAGGCAAATTAAGTTTTAGACAACCAATTA  891

seq1  GTGTGTTTTTCTTTGAGGCAGAATATTTCTTCTAATACTCTTGGAATTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTTCTTTGAGGCAGAATATTTCTTCTAATACTCTTGGAATTTC  941

seq1  TTACTTGTCCAGAATTCATATAAGATGAAGCCTTCTACTTCCCATCTATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTCCAGAATTCATATAAGATGAAGCCTTCTACTTCCCATCTATA  991

seq1  TTAGCAGGTCTACAGTATTGTTTGTCTAGCTCAAGGTGTAAAAATGTATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGGTCTACAGTATTGTTTGTCTAGCTCAAGGTGTAAAAATGTATT  1041

seq1  TACAGATATGCATATGTGTAATAAGAATCAATGAAAAAAGATTCCATGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATATGCATATGTGTAATAAGAATCAATGAAAAAAGATTCCATGAA  1091

seq1  AAGGATCAAGGAAGTGTATATGGGAGGGTTTGAATTC  1130
      |||||||||||||||||||||||||||||||||||||
seq2  AAGGATCAAGGAAGTGTATATGGGAGGGTTTGAATTC  1128


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