BAC Information

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BAC

Clone NameB6Ng01-288K11
Chromosome14 (Build37)
Map Location 38,507,738 - 38,677,246
singlet/doubletdoublet
Overlap geneLOC382871, LOC382872
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneNrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288K11.bB6Ng01-288K11.g
ACCGA086263GA086264
length1,0741,139
definitionB6Ng01-288K11.b B6Ng01-288K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,676,711 - 38,677,246)(38,507,738 - 38,508,874)
sequence
gaattcattcttaccatatcaagtagcattggctcttacctggaagtagc
caaccaatgtttgatttgaattaatgcccactctgttggatggaaaccac
acatgtcaatgcctgggtagccatgaaccagagactagatagaccagaga
agtagggtaaaaccaaatccaattggtctaaaaaaatcaacaaaatgact
cataatgctattctactatattcagattagagtcttatccagtaattatc
agagtcttcccttcagcacagacaaaaacacatgtagagacccatagcca
gatattatgaggaatgagagagagtgtgtgtctaaattggaggtctccat
gaaatccttccactcaggtcttaaagatgtctgtagaaagaatgtaagag
ccatagaggataccaaaagaacacacccctctgaatcaactaagcaaggt
gcatatgtgctcacagagattgaagcagaaatcatggggcctgcaggagt
ctatgtctgctgtataaataatttagctcttaacttaatattttataaga
tgttggactgtgagaataagagggtctctgactctttgtctgctcttggg
actttttttctcttgttgaattgccatgttcaactttcatgtgatagttt
ttgcttcctatcactgtactttgtttttgtcacgtttggttgttaaaaca
aacaaacacatacacacaaacaaaattcccacatgattgccttattagtt
acttattaattgttatgataaaataccataattaaaaaacaatttatgtt
atcaataacttattttgacttaatagttccagaggtttaagagtccatta
tggcaaggaagcatggcagcatataaataaaggcacactcacatccttaa
ccacaaatatgaatcagagaagcagcaaaatggaactaaaggcaagtcta
tacatgttcagtgcctcctttcctacctcaagaaatgtgcttgcttcagc
atgggtttcatcctccaaaacctcccaccaaaacagtacaatttagctag
gaaacaaatgtccaaattggttga
gaattcctcctatggatcactggtaaattctatgaggttggagatgtccc
tgtaatatgttataatactttttttttctttttactccaagttaattgtg
tgactagaggatataagtgttatatatcttccatgattataattttattc
atccaaagggcatttttgaaacatattaagatattgaaaggctcaattat
aaagaagaaataatattgcatcactaaaaagctcttgcacttagacacag
tgttaacgatttttcatatttagtatcctttgagctgaaggtcctgctac
caaaataaatgtccacattgaaccagatgcttttcatgtgaaatgcccat
caacgttcattacaatgttcattagtttccaaaatcaaatttgattctct
taagggctgaattaaccttaccgttattcgtgtgtctactatcaggttac
catgtattcaaagtctgagggacattggcagattgagacattaatagtta
ccttagtgacttcaaagctagagactcaacaatttctctgtggccaaggg
acagtcatttgtaagaaattacttcctcacctaaaaaagatcaaaggaat
tgatttctagctcaacttcaaactgaaatctgggaatctttcagtagttg
gatgagttggagtttgaagtgggagaagctgaagctgaagaaggttaagg
acctgaagtttcaaaaatctaccctagtaaatagggtgtcactgatagga
cacttggtaagtaaagcattgtgccctctaggtcagtatgttctgagttg
atgaactggcagaaaacatgctgttaataagtctcaaagactgaggatgg
aatactgtatgtgtcttgaggaatgtctgggaagcatgcttatcatttga
cttgtactgaccaatgcaaatagagtattgtcatacttcatggtccagtt
tttttttttttaatgaaagaacttgggtaaaatatttctaatttcttact
tgtacttgactattctattaaattttaattaatcctagtaaccataatta
cagtaatcctaaccaatatcacatgatggtgatggatttttgctttaatt
ttttttctcagtctgccatgtgactccgactatgttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38676711_38677246
seq2: B6Ng01-288K11.b_44_579 (reverse)

seq1  AAGTTAAGAGCTAAATTATTTATACAGCAGACATAGACTCCTGCAGGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGAGCTAAATTATTTATACAGCAGACATAGACTCCTGCAGGCCC  50

seq1  CATGATTTCTGCTTCAATCTCTGTGAGCACATATGCACCTTGCTTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTCTGCTTCAATCTCTGTGAGCACATATGCACCTTGCTTAGTTG  100

seq1  ATTCAGAGGGGTGTGTTCTTTTGGTATCCTCTATGGCTCTTACATTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGGGGTGTGTTCTTTTGGTATCCTCTATGGCTCTTACATTCTTT  150

seq1  CTACAGACATCTTTAAGACCTGAGTGGAAGGATTTCATGGAGACCTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACATCTTTAAGACCTGAGTGGAAGGATTTCATGGAGACCTCCAA  200

seq1  TTTAGACACACACTCTCTCTCATTCCTCATAATATCTGGCTATGGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACACACACTCTCTCTCATTCCTCATAATATCTGGCTATGGGTCTC  250

seq1  TACATGTGTTTTTGTCTGTGCTGAAGGGAAGACTCTGATAATTACTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTTTTTGTCTGTGCTGAAGGGAAGACTCTGATAATTACTGGAT  300

seq1  AAGACTCTAATCTGAATATAGTAGAATAGCATTATGAGTCATTTTGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTAATCTGAATATAGTAGAATAGCATTATGAGTCATTTTGTTGA  350

seq1  TTTTTTTAGACCAATTGGATTTGGTTTTACCCTACTTCTCTGGTCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGACCAATTGGATTTGGTTTTACCCTACTTCTCTGGTCTATCT  400

seq1  AGTCTCTGGTTCATGGCTACCCAGGCATTGACATGTGTGGTTTCCATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGGTTCATGGCTACCCAGGCATTGACATGTGTGGTTTCCATCCA  450

seq1  ACAGAGTGGGCATTAATTCAAATCAAACATTGGTTGGCTACTTCCAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGGGCATTAATTCAAATCAAACATTGGTTGGCTACTTCCAGGTA  500

seq1  AGAGCCAATGCTACTTGATATGGTAAGAATGAATTC  536
      ||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAATGCTACTTGATATGGTAAGAATGAATTC  536

seq1: chr14_38507738_38508874
seq2: B6Ng01-288K11.g_70_1208

seq1  GAATTCCTCCTATGGATCACTGGTAAATTCTATGAGGTTGGAGATGTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTATGGATCACTGGTAAATTCTATGAGGTTGGAGATGTCCC  50

seq1  TGTAATATGTTATAATACTTTTTTTTTCTTTTTACTCCAAGTTAATTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATGTTATAATACTTTTTTTTTCTTTTTACTCCAAGTTAATTGTG  100

seq1  TGACTAGAGGATATAAGTGTTATATATCTTCCATGATTATAATTTTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGAGGATATAAGTGTTATATATCTTCCATGATTATAATTTTATTC  150

seq1  ATCCAAAGGGCATTTTTGAAACATATTAAGATATTGAAAGGCTCAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGGGCATTTTTGAAACATATTAAGATATTGAAAGGCTCAATTAT  200

seq1  AAAGAAGAAATAATATTGCATCACTAAAAAGCTCTTGCACTTAGACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAATAATATTGCATCACTAAAAAGCTCTTGCACTTAGACACAG  250

seq1  TGTTAACGATTTTTCATATTTAGTATCCTTTGAGCTGAAGGTCCTGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACGATTTTTCATATTTAGTATCCTTTGAGCTGAAGGTCCTGCTAC  300

seq1  CAAAATAAATGTCCACATTGAACCAGATGCTTTTCATGTGAAATGCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAATGTCCACATTGAACCAGATGCTTTTCATGTGAAATGCCCAT  350

seq1  CAACGTTCATTACAATGTTCATTAGTTTCCAAAATCAAATTTGATTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTCATTACAATGTTCATTAGTTTCCAAAATCAAATTTGATTCTCT  400

seq1  TAAGGGCTGAATTAACCTTACCGTTATTCGTGTGTCTACTATCAGGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCTGAATTAACCTTACCGTTATTCGTGTGTCTACTATCAGGTTAC  450

seq1  CATGTATTCAAAGTCTGAGGGACATTGGCAGATTGAGACATTAATAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTCAAAGTCTGAGGGACATTGGCAGATTGAGACATTAATAGTTA  500

seq1  CCTTAGTGACTTCAAAGCTAGAGACTCAACAATTTCTCTGTGGCCAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGACTTCAAAGCTAGAGACTCAACAATTTCTCTGTGGCCAAGGG  550

seq1  ACAGTCATTTGTAAGAAATTACTTCCTCACCTAAAAAAGATCAAAGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATTTGTAAGAAATTACTTCCTCACCTAAAAAAGATCAAAGGAAT  600

seq1  TGATTTCTAGCTCAACTTCAAACTGAAATCTGGGAATCTTTCAGTAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTAGCTCAACTTCAAACTGAAATCTGGGAATCTTTCAGTAGTTG  650

seq1  GATGAGTTGGAGTTTGAAGTGGGAGAAGCTGAAGCTGAAGAAGGTTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTGGAGTTTGAAGTGGGAGAAGCTGAAGCTGAAGAAGGTTAAGG  700

seq1  ACCTGAAGTTTCAAAAATCTACCCTAGTAAATAGGGTGTCACTGATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGTTTCAAAAATCTACCCTAGTAAATAGGGTGTCACTGATAGGA  750

seq1  CACTTGGTAAGTAAAGCATTGTGCCCTCTAGGTCAGTATGTTCTGAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTAAGTAAAGCATTGTGCCCTCTAGGTCAGTATGTTCTGAGTTG  800

seq1  ATGAACTGGCAGAAAACATGCTGTTAATAAGTCTCAAAGACTGAGGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGGCAGAAAACATGCTGTTAATAAGTCTCAAAGACTGAGGATGG  850

seq1  AATACTGTATGTGTCTTGAGGAATGTCT-GGAAGCATGCTTTATCATTTG  899
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  AATACTGTATGTGTCTTGAGGAATGTCTGGGAAGCATGC-TTATCATTTG  899

seq1  ACTTGTACTGACCAATGCAAATAGAGTATTGTCATACTTCATGGTCCAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTACTGACCAATGCAAATAGAGTATTGTCATACTTCATGGTCCAGT  949

seq1  TTTTTTTTTTTTAATGAAAGAACTT-GGTAAAATATTTCTAATTTCTTAC  998
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAATGAAAGAACTTGGGTAAAATATTTCTAATTTCTTAC  999

seq1  TTGTACTTGACTAATCTATTAAA-TTTAATATATCCTAGTTACCATAATT  1047
      ||||||||||||| ||||||||| ||||||  |||||||| |||||||||
seq2  TTGTACTTGACTATTCTATTAAATTTTAATTAATCCTAGTAACCATAATT  1049

seq1  ACAGTA--TCTAACCAATATCACATGTATTGTGATGAATTTTTGCTTTAT  1095
      ||||||   ||||||||||||||||| || |||||| |||||||||||| 
seq2  ACAGTAATCCTAACCAATATCACATG-ATGGTGATGGATTTTTGCTTTAA  1098

seq1  TTTTTTTTCTCAGTCTGTCATTGTACTCCGACATATGTTCTG  1137
      ||||||||||||||||| |||   |||||||| |||||||||
seq2  TTTTTTTTCTCAGTCTGCCATGTGACTCCGAC-TATGTTCTG  1139