BAC Information

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BAC

Clone NameB6Ng01-289M18
Chromosome14 (Build37)
Map Location 46,035,380 - 46,215,893
singlet/doubletdoublet
Overlap genePlekhc1, EG382884, Ddhd1
Upstream geneEG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1
Downstream geneEG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289M18.bB6Ng01-289M18.g
ACCGA087097GA087098
length1,1401,077
definitionB6Ng01-289M18.b B6Ng01-289M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,214,745 - 46,215,893)(46,035,380 - 46,036,456)
sequence
gaattcttttgagttcttcaatgtcccgggcacaggctagtgcccactta
ataaatacaaacttggggagggggtgtttttaagggattcagccttatgg
ggagaagaacgctgttgagctgcgaagtaataataatagtaataataata
aaatttggttgttgtgaaacatacatatcctcatgtattctgtagggcct
ccctaactgaggagacatatacccacttccccaggaatataggaaattct
tcaaggaaggcagataagaaatagtcatctaagacttaaattgagcctcc
ttttttttaaactccgaaaatataccaagatagcaagcaaatttatttga
ttttctttctttattattctttgctgacgtgcactaagggacaggctgca
gagtagatctggctactttggctttcctactgccccaaaaacttagagtg
aagaatgtggcagcctaagtcacttcccttggctagactcttctccactg
tctccggcctgcattaaacacgtggtaaccaacacttacctcttgtcttt
acagtggaactggaacacaggatcgactttgaactcagagaaggccttgt
ggagagccgctattggtcagccgtcacgtcgcacactgcctattggtcat
ccttggatgtcgctctttttcttttaacattcatgtacaaacacgagcat
gataccgaggccaagcccagcctaggttcactctgaactcttgaaggacg
tgaatgcccaaagcttttctgttaaacatgtgtcaagatgcagagacttc
aaggttccagttttgttaagggcaagaactattttatttaaaagcacttt
attttatttttaaaagagaaaaaaccacatgttcagttctaaaggagtta
tttatgtttctgtcgttttgattctgtctggcagagccctgcaaagaatc
accagagtagaagttgtggttgggcttagagaactgcatgaagcagccat
cacagtccaggtcttccagagtagcctaatgttagcgttttaaccaaagg
cgtcacagcactaccagcctagtccagtaacttctgcatagactacaagt
gcatcatgttcttgatctgtgagcttcccggttccgcagt
gaattcacagggatgcacctgcctctgcctcccaagtgctaggatcaaag
gcatctatcaccatcagcactacctggctttgaagtcctttttttccccc
ttgaaattatttatttatttatttatttatttatttatttatttatttat
ttatttaatgtgcattggtgttttgtctgtaagtatgtccatgtgaggat
gtcagatcatctggaaatggagttacagaaagttgtgagctgccatgtgc
ttgctgggaattgaacttgggtcctctggaagaacagccagtgctctttt
tttttttttttttttttttggtttttcgagacagggtttctctgtatagc
cctggctgtcctggacctcactttgtagaccaggctggccttgaactcag
aaatccgcctgcctctgcctcccgagtgctgggattaaaggcgtgcgcca
ccacgcccggccaacagccagtgctcttaattgctgagccagttgtccaa
ctctgagttgagattctcctatagtgtgtcacgaaaatcatatttgtgat
ttaagaatcactctcctcaattgtctgtctcttctaaagtacaaatgtgt
tttgttttgttttgtttttttaataatccacagaaaactgactctccaaa
atcagaaaacactttaggtcagtaaatgacaggaaggactaccttcccat
cacagagtatttaccaacccgtgtatcaaaacctgatgaaagtgtggatc
tgtgacccccattgcaacactcacccgcaatgtcttgccagagatgggga
ggttcaaatgtgatcactgttttatttctgtatctatgtgattctggggt
tttgaaaatttccgtgacccgagaaaagacaagaaaaaatttgtcctgga
tcctaaacccagtgttggtactggtccctggcttagtttggtgtccagat
ttattacatgctctagccagccaggacgataggaactcttttcccttgat
gttcatttagaggcatgttaatgtttgattaaattctggactgaagatga
ggaggcagtgaagctcttgctatgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_46214745_46215893
seq2: B6Ng01-289M18.b_47_1186 (reverse)

seq1  ACTGCGG-ACACGGAAGCCTTCACAGAATCAAGAAACCATGATGCCACCT  49
      ||||||| ||  ||||||  |||||| ||||||||  ||||||||   ||
seq2  ACTGCGGAACCGGGAAGC--TCACAG-ATCAAGAA--CATGATGC--ACT  43

seq1  TGTAGTCTATGCAGAGTGTACTGGACTTAGGGCTGTTAGTGCTGTGACGC  99
      |||||||||||||||   |||||||||   ||||| ||||||||||||||
seq2  TGTAGTCTATGCAGAAGTTACTGGACT--AGGCTGGTAGTGCTGTGACGC  91

seq1  CTTTTGGTTAAAACGCT-ACATTAGGCTCCTCTGG-AGACCTGGACTGTG  147
      | ||||||||||||||| |||||||||| |||||| ||||||||||||||
seq2  C-TTTGGTTAAAACGCTAACATTAGGCTACTCTGGAAGACCTGGACTGTG  140

seq1  ATGGCTGCCTTCATGCAGTTCTCCTAAGCCC-ACCAC-ACTTCTACTCTG  195
      ||||||| |||||||||||||| |||||||| ||||| ||||||||||||
seq2  ATGGCTG-CTTCATGCAGTTCT-CTAAGCCCAACCACAACTTCTACTCTG  188

seq1  GTGATTCTTTGCAGGGCTCTGCCAGACAGAATCAAAACGACAGAAACATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTTTGCAGGGCTCTGCCAGACAGAATCAAAACGACAGAAACATA  238

seq1  AATAACTCCTTTAGAACTGAACATGTGGTTTTTTTCTCTTTTAAAAATAA  295
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATAACTCCTTTAGAACTGAACATGTGG-TTTTTTCTCTTTTAAAAATAA  287

seq1  AATAAAGTGCTTTTAAATTAAAATAGTTCTTGCCCTTAACAAAACTGGAA  345
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATAAAGTGCTTTTAAA-TAAAATAGTTCTTGCCCTTAACAAAACTGGAA  336

seq1  CCTTGAAGTCTCTGCATCTTGACACATGTTTAACAGAAAAGCTTTGGGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGTCTCTGCATCTTGACACATGTTTAACAGAAAAGCTTTGGGCA  386

seq1  TTCACGTCCTTCAAGAGTTCAGAGTGAACCTAGGCTGGGCTTGGCCTCGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTCCTTCAAGAGTTCAGAGTGAACCTAGGCTGGGCTTGGCCTCGG  436

seq1  TATCATGCTCGTGTTTGTACATGAATGTTAAAAGAAAAAGAGCGACATCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGCTCGTGTTTGTACATGAATGTTAAAAGAAAAAGAGCGACATCC  486

seq1  AAGGATGACCAATAGGCAGTGTGCGACGTGACGGCTGACCAATAGCGGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGACCAATAGGCAGTGTGCGACGTGACGGCTGACCAATAGCGGCT  536

seq1  CTCCACAAGGCCTTCTCTGAGTTCAAAGTCGATCCTGTGTTCCAGTTCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAAGGCCTTCTCTGAGTTCAAAGTCGATCCTGTGTTCCAGTTCCA  586

seq1  CTGTAAAGACAAGAGGTAAGTGTTGGTTACCACGTGTTTAATGCAGGCCG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGACAAGAGGTAAGTGTTGGTTACCACGTGTTTAATGCAGGCCG  636

seq1  GAGACAGTGGAGAAGAGTCTAGCCAAGGGAAGTGACTTAGGCTGCCACAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTGGAGAAGAGTCTAGCCAAGGGAAGTGACTTAGGCTGCCACAT  686

seq1  TCTTCACTCTAAGTTTTTGGGGCAGTAGGAAAGCCAAAGTAGCCAGATCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTCTAAGTTTTTGGGGCAGTAGGAAAGCCAAAGTAGCCAGATCT  736

seq1  ACTCTGCAGCCTGTCCCTTAGTGCACGTCAGCAAAGAATAATAAAGAAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGCCTGTCCCTTAGTGCACGTCAGCAAAGAATAATAAAGAAAG  786

seq1  AAAATCAAATAAATTTGCTTGCTATCTTGGTATATTTTCGGAGTTTAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAATAAATTTGCTTGCTATCTTGGTATATTTTCGGAGTTTAAAA  836

seq1  AAAAGGAGGCTCAATTTAAGTCTTAGATGACTATTTCTTATCTGCCTTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGGCTCAATTTAAGTCTTAGATGACTATTTCTTATCTGCCTTCC  886

seq1  TTGAAGAATTTCCTATATTCCTGGGGAAGTGGGTATATGTCTCCTCAGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAATTTCCTATATTCCTGGGGAAGTGGGTATATGTCTCCTCAGTT  936

seq1  AGGGAGGCCCTACAGAATACATGAGGATATGTATGTTTCACAACAACCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCCCTACAGAATACATGAGGATATGTATGTTTCACAACAACCAA  986

seq1  ATTTTATTATTATTACTATTATTATTACTTCGCAGCTCAACAGCGTTCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTATTATTACTATTATTATTACTTCGCAGCTCAACAGCGTTCTT  1036

seq1  CTCCCCATAAGGCTGAATCCCTTAAAAACACCCCCTCCCCAAGTTTGTAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATAAGGCTGAATCCCTTAAAAACACCCCCTCCCCAAGTTTGTAT  1086

seq1  TTATTAAGTGGGCACTAGCCTGTGCCCGGGACATTGAAGAACTCAAAAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAGTGGGCACTAGCCTGTGCCCGGGACATTGAAGAACTCAAAAGA  1136

seq1  ATTC  1149
      ||||
seq2  ATTC  1140

seq1: chr14_46035380_46036456
seq2: B6Ng01-289M18.g_68_1144

seq1  GAATTCACAGGGATGCACCTGCCTCTGCCTCCCAAGTGCTAGGATCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGGATGCACCTGCCTCTGCCTCCCAAGTGCTAGGATCAAAG  50

seq1  GCATCTATCACCATCAGCACTACCTGGCTTTGAAGTCCTTTTTTTCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTATCACCATCAGCACTACCTGGCTTTGAAGTCCTTTTTTTCCCCC  100

seq1  TTGAAATTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT  150

seq1  TTATTTAATGTGCATTGGTGTTTTGTCTGTAAGTATGTCCATGTGAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATGTGCATTGGTGTTTTGTCTGTAAGTATGTCCATGTGAGGAT  200

seq1  GTCAGATCATCTGGAAATGGAGTTACAGAAAGTTGTGAGCTGCCATGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATCATCTGGAAATGGAGTTACAGAAAGTTGTGAGCTGCCATGTGC  250

seq1  TTGCTGGGAATTGAACTTGGGTCCTCTGGAAGAACAGCCAGTGCTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGAATTGAACTTGGGTCCTCTGGAAGAACAGCCAGTGCTCTTTT  300

seq1  TTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGC  350

seq1  CCTGGCTGTCCTGGACCTCACTTTGTAGACCAGGCTGGCCTTGAACTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGACCTCACTTTGTAGACCAGGCTGGCCTTGAACTCAG  400

seq1  AAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCA  450

seq1  CCACGCCCGGCCAACAGCCAGTGCTCTTAATTGCTGAGCCAGTTGTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCGGCCAACAGCCAGTGCTCTTAATTGCTGAGCCAGTTGTCCAA  500

seq1  CTCTGAGTTGAGATTCTCCTATAGTGTGTCACGAAAATCATATTTGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTGAGATTCTCCTATAGTGTGTCACGAAAATCATATTTGTGAT  550

seq1  TTAAGAATCACTCTCCTCAATTGTCTGTCTCTTCTAAAGTACAAATGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATCACTCTCCTCAATTGTCTGTCTCTTCTAAAGTACAAATGTGT  600

seq1  TTTGTTTTGTTTTGTTTTTTTAATAATCCACAGAAAACTGACTCTCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTTTTAATAATCCACAGAAAACTGACTCTCCAAA  650

seq1  ATCAGAAAACACTTTAGGTCAGTAAATGACAGGAAGGACTACCTTCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAACACTTTAGGTCAGTAAATGACAGGAAGGACTACCTTCCCAT  700

seq1  CACAGAGTATTTACCAACCCGTGTATCAAAACCTGATGAAAGTGTGGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTATTTACCAACCCGTGTATCAAAACCTGATGAAAGTGTGGATC  750

seq1  TGTGACCCCCATTGCAACACTCACCCGCAATGTCTTGCCAGAGATGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCCCATTGCAACACTCACCCGCAATGTCTTGCCAGAGATGGGGA  800

seq1  GGTTCAAATGTGATCACTG-TTTATTTCTGTATCTATGTGATTCT-GGGT  848
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  GGTTCAAATGTGATCACTGTTTTATTTCTGTATCTATGTGATTCTGGGGT  850

seq1  TTTGAAAA-TTCCGTGACCCGAGAAAAGACAAGAAAAA--TTGT-CTGGA  894
      |||||||| |||||||||||||||||||||||||||||  |||| |||||
seq2  TTTGAAAATTTCCGTGACCCGAGAAAAGACAAGAAAAAATTTGTCCTGGA  900

seq1  TCCTAAACCCAGTGTTTGGTACTGGT-CCTGGC-TAGTTTGGTGTCCAGA  942
      |||||||||||||| ||||||||||| |||||| ||||||||||||||||
seq2  TCCTAAACCCAGTG-TTGGTACTGGTCCCTGGCTTAGTTTGGTGTCCAGA  949

seq1  TTTAATACATGCTCTAGCCAAGCAAGACAGATAGGAAACTCTTTTCCCCT  992
      |||| |||||||||||||||  || ||| |||||| ||||||||| ||||
seq2  TTTATTACATGCTCTAGCCAGCCAGGAC-GATAGG-AACTCTTTT-CCCT  996

seq1  TGATGTTCATTTAGAGCCATGTAAAATGTTGAAATAAAATCTGGGACTGA  1042
      |||||||||||||||| |||||  ||||||  | |||| ||| |||||||
seq2  TGATGTTCATTTAGAGGCATGT-TAATGTTTGATTAAATTCT-GGACTGA  1044

seq1  GAGATGAGGAGGGCAGTGAAGCTCTTGCTATGCTA  1077
       ||||||||| ||||||||||||||||||||||||
seq2  -AGATGAGGA-GGCAGTGAAGCTCTTGCTATGCTA  1077