BAC Information

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BAC

Clone NameB6Ng01-290B08
Chromosome14 (Build37)
Map Location 5,248,730 - 5,266,398
singlet/doubletdoublet
Overlap geneLOC100041401
Upstream geneLOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765
Downstream geneLOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290B08.bB6Ng01-290B08.g
ACCGA087312GA087313
length1,1651,142
definitionB6Ng01-290B08.b B6Ng01-290B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,265,222 - 5,266,398)(5,248,730 - 5,249,845)
sequence
gaattctactgcttcattagatgtcatgtgctttttagggggaacgttgg
ttaggactctgacatgcttaagagattttgttggcacccaaaactctagg
gactgtggatgtagtagatgtttcacaacagtaaatataccagctgtgtc
aattcatgtgacatacactccaatttcccagggttttcctgtctcacaga
ggcaaatatctttctcctataggtttaattgtacaaaacatggacaatat
tttctaacggtgtattccttgacagagggcattttttcatatatatatac
atgagtttcacaaaatctctggtttacaaccctatcttttacaaacttgc
tgtcccttcttcaaaacattatcctgcacatgctcccattctcaaataca
accagacaatttaagtgggcaacagagagtagtggtcatcctggactgta
cattactgcattgtagcctcatagcaattacttctccaatatctgtcttc
cagaattgctaagttgagaaatgagggtgttgcaggttgtaacgtcatac
tgtactcacagcaaatataatactcagaaggtagggctgggagtgcaatg
acctgaattgagatgaaacctcaattttaatgtgtctataaggtcaggat
gctgtccctttggcattatcatctctggcttttgtgttcttatgctggct
ttgctgaacctgtgccccctaacctcacagatttaagagtgaaaaatcat
gtatatcttctttcagaaaacatctgaatttcactaccttcttgagccac
acaatatcaatatgcagagctcaaaaatcagggggagataggtgatggct
tcaaagatgagggctttttcttacaattagggcgcatattttttttccaa
tgtgattttttccttttctcttcactaaagggtggctttgtgtgtttgct
gggcctaaagggtcctggtttccaacaacaatgggggcttactctataga
ggcttcaatttttaccaagaaaaggattgttgtagaatcaatgtcgtgac
agcaagtagtttcaactacacttgtcttagtcccagctgacttgctaata
gacctgacgacttgagcctattctgagcatgcagcagcaatgcagtgttc
catacagctctctct
gaattctgtagacattgtaaattttgatgtaggcataggaggaaataaaa
atacaagactcagaggcctttggtgaaagaaattgaaaagtacattctca
gacacacacacagacacacacagacacacacacagacacacacacacaca
gagacacacacacacacaaacaccagtgtctagagttctgtgaagcaatg
cccctccctgccttttttgtctcccacaggagacgctatatcacttccct
cctctgtaaaaagcacattctcagacacacacatacacacacacacacag
acacacacacacacacagagacacacagacacacacacagagacacacac
acacagagagacacacacacatgcagacacacacacagacacacacagac
acacacacagacacacacacagacacacacacacacagacacacacacag
acacacacacacacacacacacacacacacacacaccactgtctgtagag
gtctgtgaagcaatgctgctccttgctttttttgtctcccaccccaaact
atgtatcacttccctcctctgtatgagggcaaagccttaggaggtggatg
gtaatgtggaacagaggacacaccccataatctcctaaagtgtactgttc
cctgagaaggaaataaggtgagggggaggggcagtggcagcaaggttttc
ctagagccctttagtctgattaatacacacaatgaatgaaaacagtcatg
ctaaaagtagtgctcttaggatggtctggtagtagtgagatcaaaccgta
ttttttaggacatccttaaaacacaatgactttggaagagttgaaaaaca
gaactagttaatactgtgcattcaggagcaaagagaacactttttaatta
tacgaggacagaatttaaatgtttattaagacaatggaagatgggttatt
cctgtcttcttggcctttatgttttggaattgttttaattgtgagttgtg
tgcctgccctggtactaatcctgggcaaccaatggttcaatgcaggttac
cttgaaggccagaagaaggtatttggcatcttttaggaactgggggttac
aggttagcttggtgaagcctgtccaaggtggtactggcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5265222_5266398
seq2: B6Ng01-290B08.b_49_1213 (reverse)

seq1  AGAGAGAGCTGTGTG--ACACTGCA-TGCTGCTTCCTTTCCTCAG-ATA-  45
      |||||||||||| ||  |||||||| ||||||| |   | ||||| ||| 
seq2  AGAGAGAGCTGTATGGAACACTGCATTGCTGCTGC--ATGCTCAGAATAG  48

seq1  GCTCAGGTCGTCAGTCCTA-TACCAGGTCAGCTGGACCTAAGAC-AGTGT  93
      ||||| ||||||||  ||| || || |||||||||  ||||||| |||||
seq2  GCTCAAGTCGTCAGGTCTATTAGCAAGTCAGCTGGGACTAAGACAAGTGT  98

seq1  AGTTG-AACTACTTGCTGTCACGACA-TGATTCTACAACAATCCTTTTCT  141
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTTGAAACTACTTGCTGTCACGACATTGATTCTACAACAATCCTTTTCT  148

seq1  TGGT-AAAATTG-AGCCTCTATAGAGTAAGCCCC--ATGTTGTCGG-AAC  186
      |||| ||||||| |||||||||||||||||||||   |||||| || |||
seq2  TGGTAAAAATTGAAGCCTCTATAGAGTAAGCCCCCATTGTTGTTGGAAAC  198

seq1  CAGGACCCTTTAGG-CCAGCAAACACAC-AAGCCACCC-TTAGTGAAAGA  233
      |||||||||||||| ||||||||||||| ||||||||| |||||| ||||
seq2  CAGGACCCTTTAGGCCCAGCAAACACACAAAGCCACCCTTTAGTG-AAGA  247

seq1  GAAAAGG-AAAAATCACATTGG-AAAAAAATATGCGCCCTAATTGTAAGA  281
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  GAAAAGGAAAAAATCACATTGGAAAAAAAATATGCGCCCTAATTGTAAGA  297

seq1  AAAAGCCCTCATCTTTGAAGCCATCACCTATCTCCCCCTGATTTTTGAGC  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCTCATCTTTGAAGCCATCACCTATCTCCCCCTGATTTTTGAGC  347

seq1  TCTGCATATTGATATTGTGTGGCTCAAGAAGGTAGTGAAATTCAGATGTT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATATTGATATTGTGTGGCTCAAGAAGGTAGTGAAATTCAGATGTT  397

seq1  TTCTGAAAGAAGATATACATGATTTTTCACTCTTAAATCTGTGAGGTTAG  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGAAGATATACATGATTTTTCACTCTTAAATCTGTGAGGTTAG  447

seq1  GGGGCACAGGTTCAGCAAAGCCAGCATAAGAACACAAAAGCCAGAGATGA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACAGGTTCAGCAAAGCCAGCATAAGAACACAAAAGCCAGAGATGA  497

seq1  TAATGCCAAAGGGACAGCATCCTGACCTTATAGACACATTAAAATTGAGG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAAAGGGACAGCATCCTGACCTTATAGACACATTAAAATTGAGG  547

seq1  TTTCATCTCAATTCAGGTCATTGCACTCCCAGCCCTACCTTCTGAGTATT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCAATTCAGGTCATTGCACTCCCAGCCCTACCTTCTGAGTATT  597

seq1  ATATTTGCTGTGAGTACAGTATGACGTTACAACCTGCAACACCCTCATTT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTGTGAGTACAGTATGACGTTACAACCTGCAACACCCTCATTT  647

seq1  CTCAACTTAGCAATTCTGGAAGACAGATATTGGAGAAGTAATTGCTATGA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTAGCAATTCTGGAAGACAGATATTGGAGAAGTAATTGCTATGA  697

seq1  GGCTACAATGCAGTAATGTACAGTCCAGGATGACCACTACTCTCTGTTGC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAATGCAGTAATGTACAGTCCAGGATGACCACTACTCTCTGTTGC  747

seq1  CCACTTAAATTGTCTGGTTGTATTTGAGAATGGGAGCATGTGCAGGATAA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAAATTGTCTGGTTGTATTTGAGAATGGGAGCATGTGCAGGATAA  797

seq1  TGTTTTGAAGAAGGGACAGCAAGTTTGTAAAAGATAGGGTTGTAAACCAG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAAGAAGGGACAGCAAGTTTGTAAAAGATAGGGTTGTAAACCAG  847

seq1  AGATTTTGTGAAACTCATGTATATATATATATATATATATATATATATAT  881
      |||||||||||||||||||                            |||
seq2  AGATTTTGTGAAACTCATG----------------------------TAT  869

seq1  ATATATATGAAAAAATGCCCTCTGTCAAGGAATACACCGTTAGAAAATAT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGAAAAAATGCCCTCTGTCAAGGAATACACCGTTAGAAAATAT  919

seq1  TGTCCATGTTTTGTACAATTAAACCTATAGGAGAAAGATATTTGCCTCTG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGTTTTGTACAATTAAACCTATAGGAGAAAGATATTTGCCTCTG  969

seq1  TGAGACAGGAAAACCCTGGGAAATTGGAGTGTATGTCACATGAATTGACA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGAAAACCCTGGGAAATTGGAGTGTATGTCACATGAATTGACA  1019

seq1  CAGCTGGTATATTTACTGTTGTGAAACATCTACTACATCCACAGTCCCTA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTATATTTACTGTTGTGAAACATCTACTACATCCACAGTCCCTA  1069

seq1  GAGTTTTGGGTGCCAACAAAATCTCTTAAGCATGTCAGAGTCCTAAGCAA  1131
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGTTTTGGGTGCCAACAAAATCTCTTAAGCATGTCAGAGTCCTAACCAA  1119

seq1  CGTTCCCCCTCAAAAGCACATGACATCTAATGAAGCAGTAGAATTC  1177
      |||||||||| |||||||||||||||||||||||||||||||||||
seq2  CGTTCCCCCTAAAAAGCACATGACATCTAATGAAGCAGTAGAATTC  1165

seq1: chr14_5248730_5249845
seq2: B6Ng01-290B08.g_70_1211

seq1  GAATTCTGTAGACATTG-AAATTTTGATGTAGGCATAGGAGGAAATAAAA  49
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGACATTGTAAATTTTGATGTAGGCATAGGAGGAAATAAAA  50

seq1  ATACAAGACTCAGAGGCCTTTGGTGAAAGAAATTGAAAAGCACATTCTCA  99
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATACAAGACTCAGAGGCCTTTGGTGAAAGAAATTGAAAAGTACATTCTCA  100

seq1  GACACACACACAGACACACACAGACACACACACAGACACACACACACACA  149
      |||||||||||||||||||||||                |||||||||||
seq2  GACACACACACAGACACACACAG----------------ACACACACACA  134

seq1  GACACACACACACACAGAGATACACACACACACAAACACCAGTGTCTAGA  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACACACACACACACAGAGACACACACACACACAAACACCAGTGTCTAGA  184

seq1  GTTCTGTGAAGCAATGCCCCTCCCTGCCTTTTTTGTCTCCCACAGGAGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGAAGCAATGCCCCTCCCTGCCTTTTTTGTCTCCCACAGGAGAC  234

seq1  GCTATATCACTTCCCTCCTCTGTAAAAAGCACATTCTCAGACACACACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATCACTTCCCTCCTCTGTAAAAAGCACATTCTCAGACACACACAT  284

seq1  ACACACACACACACAGACACACACACACACACAGAGACACACAGACACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACAGACACACACACACACACAGAGACACACAGACACAC  334

seq1  ACACACAGACACACACACACAGAGAGACACACACACATGCAGACACACAC  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGACACACACACACAGAGAGACACACACACATGCAGACACACAC  384

seq1  ACAGACACACACAGACACACACACAGACACACACAC--ACACACAGACAC  447
      ||||||||||||||||||||||||||||||||||||  ||||||| ||||
seq2  ACAGACACACACAGACACACACACAGACACACACACAGACACACACACAC  434

seq1  ACACACAGACACACACACACACACACACACACACACACACACACACACAC  497
      ||| ||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAGACACACACACAGACACACACACACACACACACACACACACACACAC  484

seq1  ACCACTGTCTGTAGAGGTCTGTGAAGCAATGCTGCTCCTTGCTTTTTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTCTGTAGAGGTCTGTGAAGCAATGCTGCTCCTTGCTTTTTTTG  534

seq1  TCTCCCACCCCAAACTCTGTATCACTTCCCTCCTCTGTATGAGGGCAAAG  597
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTCCCACCCCAAACTATGTATCACTTCCCTCCTCTGTATGAGGGCAAAG  584

seq1  CCTTAGGAGGTGGATGGTAATGTGGAACAGAGGACACACCCGATAATCTC  647
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTTAGGAGGTGGATGGTAATGTGGAACAGAGGACACACCCCATAATCTC  634

seq1  CTAAAGTGTACTGTTCCCTGAGAAGGAAATAAGGTGAGGGGGAGGGGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTGTACTGTTCCCTGAGAAGGAAATAAGGTGAGGGGGAGGGGCAG  684

seq1  TGGCAGCAAGGTTTTCCTAGAGCCCTTTAGTCTGATTAATACACACAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCAAGGTTTTCCTAGAGCCCTTTAGTCTGATTAATACACACAATG  734

seq1  AATGAAAACAGTCATGCTAAAAGTAGTGCTCTTAGGATGGTCTGGTAGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACAGTCATGCTAAAAGTAGTGCTCTTAGGATGGTCTGGTAGTA  784

seq1  GTGAGATCAAACCGTA-TTTTTAGGACATCCTTAAAACACAATGAC-TTG  845
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  GTGAGATCAAACCGTATTTTTTAGGACATCCTTAAAACACAATGACTTTG  834

seq1  GAAGAGTTGAAAAACAGAACTAGTT-ATACTGTGCATTCAGGAGCAAAGA  894
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAGAGTTGAAAAACAGAACTAGTTAATACTGTGCATTCAGGAGCAAAGA  884

seq1  GAACACTTTT--ATTATAC-AGGACAGAATTT-AATGTT--ATAAGACAA  938
      ||||||||||  ||||||| |||||||||||| ||||||   ||||||||
seq2  GAACACTTTTTAATTATACGAGGACAGAATTTAAATGTTTATTAAGACAA  934

seq1  TGG-AGATGG--TATT-CTGT-TTCTTG--CTTTATGTTTT-GAATTGTT  980
      ||| ||||||  |||| |||| ||||||  ||||||||||| ||||||||
seq2  TGGAAGATGGGTTATTCCTGTCTTCTTGGCCTTTATGTTTTGGAATTGTT  984

seq1  TTA--TGTGAG-TGTGTGCCTG-CCTG--TCTA--TCTGGGC-ACCA--T  1019
      |||  |||||| |||||||||| ||||   |||   |||||| ||||   
seq2  TTAATTGTGAGTTGTGTGCCTGCCCTGGTACTAATCCTGGGCAACCAATG  1034

seq1  GTTC-ATGCAGG-TACCT--GAGGCCAGAAGAGGGTATT--GGATCTTTT  1063
      |||| ||||||| |||||   ||||||||||| ||||||  | |||||||
seq2  GTTCAATGCAGGTTACCTTGAAGGCCAGAAGAAGGTATTTGGCATCTTTT  1084

seq1  -GGAACT-GGTGTTACAGG-TAGCT--GTGA--GCTGCCCAAGGTGGTTA  1106
       |||||| || |||||||| |||||  ||||   ||| ||||||||| ||
seq2  AGGAACTGGGGGTTACAGGTTAGCTTGGTGAAGCCTGTCCAAGGTGG-TA  1133

seq1  CTGGGCACTG  1116
      || |||||||
seq2  CT-GGCACTG  1142