BAC Information

Click to search

BAC

Clone NameB6Ng01-291I08
Chromosome14 (Build37)
Map Location 100,516,579 - 100,517,648
singlet/doubletsinglet
Overlap geneKlf12
Upstream geneD14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291I08.bB6Ng01-291I08.g
ACCGA088383GA088384
length1,2121,061
definitionB6Ng01-291I08.b B6Ng01-291I08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccgatacctaaaaatgataaaagcaatctacagcaaacca
aaaaggagatgaagaagatacaaattcgaaaagaagaagtcaaaatatca
ctttttgcaggtgatatgatagtatatataagtgatgctaaaaattccac
cacagaactcctaaacctgataaacagcttcaatgaagtacctggttata
aaattcactcaaacaagtcaatggcctttcggtacacaaaggataaacag
tctgagaaagaaattagggaaacaacacccttgtcaatagtcacaaataa
tataaaataccttggcatgactctaactaaggaagtgaaagatctgtatg
ataagaccttcaagtctctgaagaaagaaattaaagaagatctcataaga
tggaaagacctcccatgctaatggattggcaggatcaatatagtaaaaat
ggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaa
ttccaactcaattcttcaatgaatttaaaagggcaacctgcaaattcatc
tggaataacaaaaaacctaggatagcaaaaactctgctcaagaagaaaaa
aacctccggtggaatcaccatgcctgacctaaagctgtactacagagcaa
ttgtgataaaaactgcatggtactggtatagtgacagacaagtagaccaa
tggaatagcattgaagacccagaaatgaacccacacacctatggtcacat
gatctttgacaagggagctaaaaccatccagtggaaaaaagacagtattt
tcaacaaatggtgctggcacaactggcggttatcatgtagaagaatggga
attgatccattcctatctccttgtactaaggtcaactctaagtggattaa
ggaactccacataaaaccagagacactgaaacttatagaggagaaagtgg
ggaaaagtctcaaagatatgggcacaggagaaaaaattcctgaagagaac
agaaatgggcttgtgctgtagatggaggattgacaaatgggactcatata
attgcaaagcttctgcagcaaagacacaatcaataaaacaaaagccacaa
cagatgggaaagatctttactatctaattcgaattggacctatatcaata
ataagactcagtatgtgactccggaaatccataaccccaattaaaaatgg
ggggcctcctcg

gaattctcattgaccatttctaaggctagaactcctagttgccatttcta
atcctggatccttacaggacccttccatctcccaaggcttggacttactt
gcacactgatagccccattctggaatctttgagcttgctttatgggaaaa
ctttggatatgcataaagggtggagggaaatgttctaaattaatagcaga
tgtattttgaagttggctacaaatattccttatatggagtattattgtct
tttaatattgaggtaccatttgtactttttaattgatgactatgaggtag
tataaagttaagatttggcacagaagatgtggttccgcatttaagagtcc
ttcccatccttccagaggactgagctcagccccatgctagtcagtaactc
tagctccatgggagcttggggcctcttatggactctaggaatctgaaaca
tatgtaaagtgagagagacagggtagagggagacaaagaggggcatacat
acatgcacacgtataatgcatatgcataactacataattggaatatgcat
aactacataattggaaaagaaaatgtttaaaagaatgtgcacagtagagt
atatacatatgacagaattctttatgaaagcgttcaaaagataatgtcat
tattcaggttgatattgtgataatatccagtttcatctccaaccaaagct
tccttctgtctacgtccttgctagtcttttggtgttactcagttattttt
gttcttcacaaatacagagaattttgtagctgcaagatttttattatgct
ctctgtacccaaaagcaatgcatttatcaccttggatcgataggacagtg
gttctccacctgtaggttgtgacccctttgggagatgcatattagatatc
ctgaagatcagatatgtacattataattcacagcagtagcaaaattgcag
ttaggaagtagcagtgaagcaattttatggttgatggtcaccacaacatg
aagaactatattaaagagtgcgcatagcaggttgatgaatagagatggtg
atcttatgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_100516579_100517648
seq2: B6Ng01-291I08.g_68_1128 (reverse)

seq1  AAGCATAAGATCAACCAATTCTCCTATTCAATCAACCCTGCTAATGCCGC  50
      |||||||||||| ||||  ||| |||||| ||||| |||||| ||| |||
seq2  AAGCATAAGATC-ACCA--TCT-CTATTC-ATCAA-CCTGCT-ATG-CGC  42

seq1  AACTCTTTAATATAGTTCTTCATGTTGTGGTGACCATCAACCATAAAATT  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACTCTTTAATATAGTTCTTCATGTTGTGGTGACCATCAACCATAAAATT  91

seq1  GCTTCACTGCTACTTCCTAACTGCAATTTTGCTACTGCTGTGAATTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTGCTACTTCCTAACTGCAATTTTGCTACTGCTGTGAATTATAA  141

seq1  TGTACATATCTGATCTTCAGGATATCTAATATGCATCTCCCAAAGGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATCTGATCTTCAGGATATCTAATATGCATCTCCCAAAGGGGTC  191

seq1  ACAACCTACAGGTGGAGAACCACTGTCCTATCGATCCAAGGTGATAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTACAGGTGGAGAACCACTGTCCTATCGATCCAAGGTGATAAATG  241

seq1  CATTGCTTTTGGGTACAGAGAGCATAATAAAAATCTTGCAGCTACAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTTTGGGTACAGAGAGCATAATAAAAATCTTGCAGCTACAAAAT  291

seq1  TCTCTGTATTTGTGAAGAACAAAAATAACTGAGTAACACCAAAAGACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATTTGTGAAGAACAAAAATAACTGAGTAACACCAAAAGACTAG  341

seq1  CAAGGACGTAGACAGAAGGAAGCTTTGGTTGGAGATGAAACTGGATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACGTAGACAGAAGGAAGCTTTGGTTGGAGATGAAACTGGATATTA  391

seq1  TCACAATATCAACCTGAATAATGACATTATCTTTTGAACGCTTTCATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATATCAACCTGAATAATGACATTATCTTTTGAACGCTTTCATAAA  441

seq1  GAATTCTGTCATATGTATATACTCTACTGTGCACATTCTTTTAAACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATATGTATATACTCTACTGTGCACATTCTTTTAAACATTT  491

seq1  TCTTTTCCAATTATGTAGTTATGCATATTCCAATTATGTAGTTATGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCAATTATGTAGTTATGCATATTCCAATTATGTAGTTATGCATA  541

seq1  TGCATTATACGTGTGCATGTATGTATGCCCCTCTTTGTCTCCCTCTACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATACGTGTGCATGTATGTATGCCCCTCTTTGTCTCCCTCTACCC  591

seq1  TGTCTCTCTCACTTTACATATGTTTCAGATTCCTAGAGTCCATAAGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCACTTTACATATGTTTCAGATTCCTAGAGTCCATAAGAGGC  641

seq1  CCCAAGCTCCCATGGAGCTAGAGTTACTGACTAGCATGGGGCTGAGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTCCCATGGAGCTAGAGTTACTGACTAGCATGGGGCTGAGCTCA  691

seq1  GTCCTCTGGAAGGATGGGAAGGACTCTTAAATGCGGAACCACATCTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGGAAGGATGGGAAGGACTCTTAAATGCGGAACCACATCTTCTG  741

seq1  TGCCAAATCTTAACTTTATACTACCTCATAGTCATCAATTAAAAAGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATCTTAACTTTATACTACCTCATAGTCATCAATTAAAAAGTACA  791

seq1  AATGGTACCTCAATATTAAAAGACAATAATACTCCATATAAGGAATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACCTCAATATTAAAAGACAATAATACTCCATATAAGGAATATTT  841

seq1  GTAGCCAACTTCAAAATACATCTGCTATTAATTTAGAACATTTCCCTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAACTTCAAAATACATCTGCTATTAATTTAGAACATTTCCCTCCA  891

seq1  CCCTTTATGCATATCCAAAGTTTTCCCATAAAGCAAGCTCAAAGATTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATGCATATCCAAAGTTTTCCCATAAAGCAAGCTCAAAGATTCCA  941

seq1  GAATGGGGCTATCAGTGTGCAAGTAAGTCCAAGCCTTGGGAGATGGAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGGCTATCAGTGTGCAAGTAAGTCCAAGCCTTGGGAGATGGAAGG  991

seq1  GTCCTGTAAGGATCCAGGATTAGAAATGGCAACTAGGAGTTCTAGCCTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTAAGGATCCAGGATTAGAAATGGCAACTAGGAGTTCTAGCCTTA  1041

seq1  GAAATGGTCAATGAGAATTC  1070
      ||||||||||||||||||||
seq2  GAAATGGTCAATGAGAATTC  1061


| Home | SequenceCutter | Blast | Download |