BAC Information

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BAC

Clone NameB6Ng01-291J17
Chromosome14 (Build37)
Map Location 111,774,857 - 111,776,014
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291J17.bB6Ng01-291J17.g
ACCGA088449GA088450
length1,1881,136
definitionB6Ng01-291J17.b B6Ng01-291J17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattactacctgctgacgccacaacattggttattattaggtgt
tagaaaaatactctttcaattgagctgcaccactaactttgttacattgt
tttgtgacagtcatattggcatttaaataaaggagacaggaaccaatgtc
taaacagctctgagagctaataatctccctagacactggttcagaagttg
tgaaaaatattgtcatttaaaccaagatgtctacctctaacatttagctt
accattagggaaaaaaaaagaaataaactgacataattgatgtgcaccta
atttaaatttttaaaagttaactaataacatattcattttatgtattgat
atgtgttgcacaacactgttcccaaggatatatggataaaatactctcaa
tgctgatacagaactagtcatagacccaaatacatacaccactggagctc
aaggtactgagctaataaatttcctgaagttacataaaagcatataggtg
cggtttacacagagctcataattctttttattacaaaaaacctgatgtag
tatgaataatggcttgcctcagactatccccattttgggtctcctatctg
tgtggaacgggtctctagttgcaggtggacaaggagtcggcgaatgaatg
acagactgtagaatctgaatgtaatttgttaaatcgagcatcaaatgttt
tatacagaagaaaataggaagttgggtgacacacccacaaggtacaaaga
ggtaactggattctcacataaaacagaggaatgcaaacacagaaggactg
gcaggaaccaactggggtaaaattcaatgttaacagctgggatcaaaaac
agctccacctaaagtccccttaatcttagaagccggggcaaagggcttcg
tgcccttgccatggttcctactctagtctattgtatcgtccaccttcccc
taagccattgtaataattgtatacggtgtgactcagctatctatagtcta
agtatctaacctagtatctctacgtcacaacttcttctcctagaatatgg
ttaatttctgtgtagggcagtgactagtatcatgccaaggtcgtatcaag
gctgctagatctaacctagcctaatatgtcaattcatcctaggaacctgg
tataaggcaaattttgaaggtaagtcactcacggatcc

gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaaccaggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaatattgatctattgatataactga
taattaagaggaaaggggagaagccgaacccatgggtttcattaagaaag
tccctgattcacacatacatgcagctactcattcattagcatgacaggag
atgttataaaatacatgactcagcagtaaatacacagaatcatgaaaata
cagaaagaaaaattcatcacatatagaacatatgtcataggaggaaactc
attaaaaattctatttggtcaagtatgggcatagtgaaattctgtatgtt
agattgagggtacgtaatcctttcctaagagcaccttataaggatggcta
aacggaactatttctgaataatgcctagaaactggaaaagagaatgaatc
atgaacggaagttaaaacagcagtgaaaatacagcattttgtgcaaaaca
tggcattaaggaaatatagactcactcaggaaatgaaaggcatttaattt
tgtgaataagagattacttgtagggttgatttgtaaaaggcaggaaattg
gtttggccagaaaggcagagaaacaggggccacattattcaaggtggcat
aagtcttgctaaagatgtagggcatcctttttaagaagcaaggagaactc
tttgaaaggtttttatgaagtcaaattccatttaattttgcatttgaaat
gatgttctttccatgttgtttggaaaatggattagaaagaattaaagaca
tagtttaaaaaacataattagtaaaagtgcacaatcgaagtaataatgac
atttatgtagattggaaagtgacctttccagcaggaagcacggatactct
tgagaaatgcaaacagaaatgagaaatgattattttttggaagaaaagaa
tggaaggagtcatctttcctgagatatgaattctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111774857_111776014
seq2: B6Ng01-291J17.g_64_1199

seq1  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50

seq1  GGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100

seq1  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGGATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGGATCTTCCT  150

seq1  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200

seq1  CTTTCTTGCCGGTCGAGCGGGACGCAATATTGATCTATTGATATAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGCCGGTCGAGCGGGACGCAATATTGATCTATTGATATAACTGA  250

seq1  TAATTAAGAGGAAAGGGGAGAAGCCGAACCCATGGGTTTCATTAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGAGGAAAGGGGAGAAGCCGAACCCATGGGTTTCATTAAGAAAG  300

seq1  TCCCTGATTCACACATACATGCAGCTACTCATTCATTAGCATGACAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATTCACACATACATGCAGCTACTCATTCATTAGCATGACAGGAG  350

seq1  ATGTTATAAAATACATGACTCAGCAGTAAATACACAGAATCATGAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAAAATACATGACTCAGCAGTAAATACACAGAATCATGAAAATA  400

seq1  CAGAAAGAAAAATTCATCACATATAGAACATATGTCATAGGAGGAAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAAAATTCATCACATATAGAACATATGTCATAGGAGGAAACTC  450

seq1  ATTAAAAATTCTATTTGGTCAAGTATGGGCATAGTGAAATTCTGTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTCTATTTGGTCAAGTATGGGCATAGTGAAATTCTGTATGTT  500

seq1  AGATTGAGGGTACGTAATCCTTTCCTAAGAGCACCTTATAAGGATGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGGGTACGTAATCCTTTCCTAAGAGCACCTTATAAGGATGGCTA  550

seq1  AACGGAACTATTTCTGAATAATGCCTAGAAACTGGAAAAGAGAATGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAACTATTTCTGAATAATGCCTAGAAACTGGAAAAGAGAATGAATC  600

seq1  ATGAACGGAAGTTAAAACAGCAGTGAAAATACAGCATTTTGTGCAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACGGAAGTTAAAACAGCAGTGAAAATACAGCATTTTGTGCAAAACA  650

seq1  TGGCATTAAGGAAATATAGACTCACTCAGGAAATGAAAGGCATTTAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAAGGAAATATAGACTCACTCAGGAAATGAAAGGCATTTAATTT  700

seq1  TGTGAATAAGAGATTACTTGTAGGGTTGATTTGTAAAAGGCAGGAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAAGAGATTACTTGTAGGGTTGATTTGTAAAAGGCAGGAAATTG  750

seq1  GTTTGGCCAGAAAGGCAGAGAAACAGGGGCCACATTATTCAAGGTGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCCAGAAAGGCAGAGAAACAGGGGCCACATTATTCAAGGTGGCAT  800

seq1  AAGTCTTGCTAAAGATGTAGGGCATCCTTTTTAAGAAGCAAGGAGAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGCTAAAGATGTAGGGCATCCTTTTTAAGAAGCAAGGAGAACTC  850

seq1  TT--GAAGGTTTTTATGAAGTCAAATTCCATTTAA-TTTGCATTTGAAAT  897
      ||   |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTGAAAGGTTTTTATGAAGTCAAATTCCATTTAATTTTGCATTTGAAAT  900

seq1  GATGTTCTTTCCATGTTGTTTGGAAAATGGATTAGAAAGAATTAAAGACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTTTCCATGTTGTTTGGAAAATGGATTAGAAAGAATTAAAGACA  950

seq1  TAGTTTAAAAAACATAATTAGTAAAAGGTTGCAACAATCGAAGTAATAAA  997
      |||||||||||||||||||||||||||  ||| |||||||||||||| ||
seq2  TAGTTTAAAAAACATAATTAGTAAAAG--TGC-ACAATCGAAGTAAT-AA  996

seq1  TGACATTTATGTAGATTTGAAAGTGACCCTTCCAGCAGGAAAGCACGGAT  1047
      ||||||||||||||||| |||||||||| |||||||||| ||||||||||
seq2  TGACATTTATGTAGATTGGAAAGTGACCTTTCCAGCAGG-AAGCACGGAT  1045

seq1  AAACTCTGAGGAAAATGCAAACCAGAAAATGAGGAAAATGA-TATATTTT  1096
      |  || ||||  ||||||||| ||| |||||||  |||||| ||| ||||
seq2  ACTCT-TGAG--AAATGCAAA-CAG-AAATGAG--AAATGATTATTTTTT  1088

seq1  GAAAGAAAAAAGAATTGAAAAGAAATTCAATCTTTCCCTGAGGAAAATTA  1146
      | |||  |||||||| |  ||| | |   |||||| ||||||       |
seq2  GGAAG--AAAAGAATGG--AAGGAGT--CATCTTT-CCTGAG-------A  1124

seq1  ATTGAATTCTAG  1158
        ||||||||||
seq2  TATGAATTCTAG  1136


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