BAC Information

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BAC

Clone NameB6Ng01-291O06
Chromosome14 (Build37)
Map Location 12,695,306 - 12,802,237
singlet/doubletdoublet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291O06.bB6Ng01-291O06.g
ACCGA088664GA088665
length1,027775
definitionB6Ng01-291O06.b B6Ng01-291O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,695,306 - 12,696,316)(12,801,463 - 12,802,237)
sequence
gaattcacaagcctatttaaaataccctgctgcctgctctagtgctttgg
ggcccaaagtcaggatgcatgtcagtaggataccatgaatgtgtttggat
agagtgttggttcacatcccaggtgggacaaagcaagatgctgtttagaa
tggagtgtgagttttagcttataacttcttaatttctggaattttccatt
taatagtttcagaccatggttgatagaagttagcaaactgtagaaagcaa
agggcagcgaagtggtggtggtgatggtggtgatgtctctaatccgagca
cgcaggaggcagaggcaggtggatatctgtgaatgtgttcaagggtaacc
tggtctacatagtaagttccaggatagccaggaacccagtctcaaaaaga
aatgaagaagaaagcaaaggcatggataaagggtggatcctggaccttat
agtctagttatgtgatggtctatgcctgctctgttgctttctgattttat
taatatgaaacaaggactcaaactccactgccctgtactctattctcctt
tttatctgtgcctgcctcttttgtcatgtttctagaccgacgcgtgtgtc
agccagcagcatgaatgtcattcagacattggcaggaagagttgcttctg
aaaatagtttcttcacatctgggtgttgagtttccttggctgaggctgag
ggaatcatgaacactgggtatcattttccctacagtagacaggtccagct
ctgggactttcatgctcttccatggtataacctttgtcctgcctctgttg
cttctgtgtatatacagctttcagtagcccagagcaactggggagccctt
ccctggccttaagctttgccagtacttgaaactgggcccttgtttctttc
tctcaagaaaaagcctgagtttttcttagcactctcaagagactgtgaat
gtcttacaaaaaaagaaaaccgtggtgccaagagaatagagagttgcaga
cagtcctgatcttctggcccatccagc
gaattcactccaacttcaattattagtagaaacgtgccatgattccattc
ctgtttgtgtgttaggaattgtcagttacaggatcaaccacaggccaagg
aaggagtatgatacaaggaaaggtaacattcttaggagaactgcagaagc
aatgacatccagagccacgaaacaaagactgagccattctaacactactg
tccctttcaccagaatagtttgaacctatactacctcacataagcaaagt
cccctttgcctatgacaacactcatggtcttacacaatgtcaccaacctt
gggacctttgcatagttctgttctcacagcaggatcagagttatccctta
atctttatctccatcactatctccaagatccttcccatcttggcgccatg
tccctctgcttcagagtccatctataacaactgaaaaggcactatgactc
agcaattggtctcctgcagtgtcacctccagaacacaaacatctggaggc
aggcaagtggcttccagttctacttgtgtgtcactaacatctgtaaggca
gaacatgcaaagaaaccttcagtcagcagggaaactgatgcagggcagca
gaggatacccaaggacgggtctgtcctacaacaggacactgcagtcactc
ctaattacttttctgagtttgattttgcaggaaaaaaagggaagagaaga
gaagagaagagaagagaagagaagagaagagaagagaagagaagaggaga
ggagaggagaggagaggagaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12695306_12696316
seq2: B6Ng01-291O06.b_49_1075

seq1  GAATTCACAAGCCTATTTAAAATACCCTGCTGCCTGCTCTAGTGCTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGCCTATTTAAAATACCCTGCTGCCTGCTCTAGTGCTTTGG  50

seq1  GGCCCAAAGTCAGGATGCATGTCAGTAGGATACCATGAATGTGTTTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAAGTCAGGATGCATGTCAGTAGGATACCATGAATGTGTTTGGAT  100

seq1  AGAGTGTTGGTTCACATCCCAGGTGGGACAAAGCAAGATGCTGTTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTGGTTCACATCCCAGGTGGGACAAAGCAAGATGCTGTTTAGAA  150

seq1  TGGAGTGTGAGTTTTAGCTTATAACTTCTTAATTTCTGGAATTTTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTGAGTTTTAGCTTATAACTTCTTAATTTCTGGAATTTTCCATT  200

seq1  TAATAGTTTCAGACCATGGTTGATAGAAGTTAGCAAACTGTAGAAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTTCAGACCATGGTTGATAGAAGTTAGCAAACTGTAGAAAGCAA  250

seq1  AGGGCAGCGAAGTGGTGGTGGTGATGGTGGTGATGTCTCTAATCCGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCGAAGTGGTGGTGGTGATGGTGGTGATGTCTCTAATCCGAGCA  300

seq1  CGCAGGAGGCAGAGGCAGGTGGATATCTGTGAATGTGTTCAAGGGTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGAGGCAGAGGCAGGTGGATATCTGTGAATGTGTTCAAGGGTAACC  350

seq1  TGGTCTACATAGTAAGTTCCAGGATAGCCAGGAACCCAGTCTCAAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACATAGTAAGTTCCAGGATAGCCAGGAACCCAGTCTCAAAAAGA  400

seq1  AATGAAGAAGAAAGCAAAGGCATGGATAAAGGGTGGATCCTGGACCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAAGAAAGCAAAGGCATGGATAAAGGGTGGATCCTGGACCTTAT  450

seq1  AGTCTAGTTATGTGATGGTCTATGCCTGCTCTGTTGCTTTCTGATTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTTATGTGATGGTCTATGCCTGCTCTGTTGCTTTCTGATTTTAT  500

seq1  TAATATGAAACAAGGACTCAAACTCCACTGCCCTGTACTCTATTCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGAAACAAGGACTCAAACTCCACTGCCCTGTACTCTATTCTCCTT  550

seq1  TTTATCTGTGCCTGCCTCTTTTGTCATGTTTCTAGACCGACGCGTGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGTGCCTGCCTCTTTTGTCATGTTTCTAGACCGACGCGTGTGTC  600

seq1  AGCCAGCAGCATGAATGTCATTCAGACATTGGCAGGAAGAGTTGCTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCAGCATGAATGTCATTCAGACATTGGCAGGAAGAGTTGCTTCTG  650

seq1  AAAATAGTTTCTTCACATCTGGGTGTTGAGTTTCCTTGGCTGAGGCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTTCTTCACATCTGGGTGTTGAGTTTCCTTGGCTGAGGCTGAG  700

seq1  GGAATCATGAACACTGGGTATCATTTTCCCTACAGTAGACAGGTCCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCATGAACACTGGGTATCATTTTCCCTACAGTAGACAGGTCCAGCT  750

seq1  CTGGGAC-TTCATGCTCTTCCATGGTATAACC-TTGTCCTGCCTCTGTTG  798
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  CTGGGACTTTCATGCTCTTCCATGGTATAACCTTTGTCCTGCCTCTGTTG  800

seq1  CTTCTGTGTATATACAGC-TTCAGTAGCCCAGAGCAACTGGGGAGCCC-T  846
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  CTTCTGTGTATATACAGCTTTCAGTAGCCCAGAGCAACTGGGGAGCCCTT  850

seq1  CCCTGGCCTTAAGC-TTGCCAGTACTTGAAACTGGG-CCTTGTTTCTTTC  894
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CCCTGGCCTTAAGCTTTGCCAGTACTTGAAACTGGGCCCTTGTTTCTTTC  900

seq1  TCTCAAGAAAAAG-CTGAGTTTTTCTTAGCA--CTCAAGAGACTGTGAAT  941
      ||||||||||||| |||||||||||||||||  |||||||||||||||||
seq2  TCTCAAGAAAAAGCCTGAGTTTTTCTTAGCACTCTCAAGAGACTGTGAAT  950

seq1  GTCTTACAAAAAAGGAAAACCGT-GTGCCAAGAGAAGAGAG---TGCAGA  987
      ||||||||||||| ||||||||| |||||||||||| ||||   ||||||
seq2  GTCTTACAAAAAAAGAAAACCGTGGTGCCAAGAGAATAGAGAGTTGCAGA  1000

seq1  CAG-CCTGATC-TCT-GCCCATCCAGC  1011
      ||| ||||||| ||| |||||||||||
seq2  CAGTCCTGATCTTCTGGCCCATCCAGC  1027

seq1: chr14_12801463_12802237
seq2: B6Ng01-291O06.g_70_844 (reverse)

seq1  TCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTTCTCTTCTCTTCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTTCTCTTCTCTTCTCTTC  50

seq1  TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCCCTTTTTTTCCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCCCTTTTTTTCCTGCA  100

seq1  AAATCAAACTCAGAAAAGTAATTAGGAGTGACTGCAGTGTCCTGTTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAACTCAGAAAAGTAATTAGGAGTGACTGCAGTGTCCTGTTGTAG  150

seq1  GACAGACCCGTCCTTGGGTATCCTCTGCTGCCCTGCATCAGTTTCCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACCCGTCCTTGGGTATCCTCTGCTGCCCTGCATCAGTTTCCCTGC  200

seq1  TGACTGAAGGTTTCTTTGCATGTTCTGCCTTACAGATGTTAGTGACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAGGTTTCTTTGCATGTTCTGCCTTACAGATGTTAGTGACACAC  250

seq1  AAGTAGAACTGGAAGCCACTTGCCTGCCTCCAGATGTTTGTGTTCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAACTGGAAGCCACTTGCCTGCCTCCAGATGTTTGTGTTCTGGAG  300

seq1  GTGACACTGCAGGAGACCAATTGCTGAGTCATAGTGCCTTTTCAGTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACTGCAGGAGACCAATTGCTGAGTCATAGTGCCTTTTCAGTTGTT  350

seq1  ATAGATGGACTCTGAAGCAGAGGGACATGGCGCCAAGATGGGAAGGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGACTCTGAAGCAGAGGGACATGGCGCCAAGATGGGAAGGATCT  400

seq1  TGGAGATAGTGATGGAGATAAAGATTAAGGGATAACTCTGATCCTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAGTGATGGAGATAAAGATTAAGGGATAACTCTGATCCTGCTGT  450

seq1  GAGAACAGAACTATGCAAAGGTCCCAAGGTTGGTGACATTGTGTAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGAACTATGCAAAGGTCCCAAGGTTGGTGACATTGTGTAAGACC  500

seq1  ATGAGTGTTGTCATAGGCAAAGGGGACTTTGCTTATGTGAGGTAGTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTTGTCATAGGCAAAGGGGACTTTGCTTATGTGAGGTAGTATAG  550

seq1  GTTCAAACTATTCTGGTGAAAGGGACAGTAGTGTTAGAATGGCTCAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACTATTCTGGTGAAAGGGACAGTAGTGTTAGAATGGCTCAGTCT  600

seq1  TTGTTTCGTGGCTCTGGATGTCATTGCTTCTGCAGTTCTCCTAAGAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCGTGGCTCTGGATGTCATTGCTTCTGCAGTTCTCCTAAGAATGT  650

seq1  TACCTTTCCTTGTATCATACTCCTTCCTTGGCCTGTGGTTGATCCTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCCTTGTATCATACTCCTTCCTTGGCCTGTGGTTGATCCTGTAA  700

seq1  CTGACAATTCCTAACACACAAACAGGAATGGAATCATGGCACGTTTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATTCCTAACACACAAACAGGAATGGAATCATGGCACGTTTCTAC  750

seq1  TAATAATTGAAGTTGGAGTGAATTC  775
      |||||||||||||||||||||||||
seq2  TAATAATTGAAGTTGGAGTGAATTC  775