BAC Information

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BAC

Clone NameB6Ng01-293L05
Chromosome14 (Build37)
Map Location 33,231,742 - 33,358,834
singlet/doubletdoublet
Overlap geneChat, Slc18a3, LOC100040834, EG665618, Ercc6
Upstream geneSh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik
Downstream gene9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293L05.bB6Ng01-293L05.g
ACCGA090016GA090017
length1,2111,098
definitionB6Ng01-293L05.b B6Ng01-293L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,357,628 - 33,358,834)(33,231,742 - 33,232,836)
sequence
gaattccaggagttccaggtctgccttgaaacaagggagggagggagata
aggaacagacagacacacagtcagacaaatgagcccatctcattgcaaac
cttggttcttggtgagctgctacttaactcctttcagtagatgtgccata
attaattttctcttgatattaagtcaattaagtgtgaatctggtggtaac
atcattgctcatgtgtaagaaaaattttgagacacttactgcttattagt
ttggctaattataataaatacactgaaaatacactttggaggaagaatta
aaaaatcaaaacccaattaaatataaaaataagacaatttgagaagacaa
gccccatagatgcattgcatgccctgggaccacaatgtctcccactgaac
agacctatctgcagggaggctctggactaggcaggctccagtgggggttg
gtggcatattttataggaaggaaaaggctcaggaaaagagggaggggtta
agggaggagagtgacacacaaacaaagttgaaatccagaactacatgact
ccaaagtgaccccattttggaaataatctagcagagcagtcctgaagcag
ggataatttgctcccttgggccatttggcaatatcaacagacattttttt
ttcaagtggcaaagaacaattagtacctagtaaacagaagtcagagatgc
tattcatcctataaaactacggtcagtcccttttacagaaaatagaatgt
caagaatgccaaggctgagttagtcttgacttggaagaaaatctggcttt
acatacccataatcctaacacataagaggcctaaggcaggaggcttgcaa
gttttgaccaccctagactacatgataataccatgtctcaaagaataaaa
attaaaaataagaaacaaaacaaatagactgttttgccactccacagtcc
agaatggctggattctaggccactggccttctcctaccaaagcagagacg
ccatgggagcagcttccaagccaggccccaggatctcctagcaccaccct
gaaattcaatcacccaaccacagggccaacactctttctttcctttgggt
ccaattttataaatgtagaaattcagaaccagcactctgaagaattaggc
acgaccttgattcatggtaccctttggaaatccgcaacagtgggaccaag
ggtgtgttttg
gaattcaaggccatcctgggcaacttgatgagactctgtttcaaaataaa
aaagttaaaaaaaaaggactccccaaatagcttagtgctacagcacttgc
ctagcatgtgcaaaagcctggattaatcccagtgccgtaaaaataaataa
aataaaaatgaataaaaacgggacgtggtagccttgccgagtcactgagc
agttggcgctgctgaggaacggccactcaccatgactgtgtactcagttt
gggcctggatggccctctgcagcagctgcagtttctcagaagcctgtgaa
caaagaagaggttcagccgtggatggcagatgcagccagggagtccgtgt
gtgtggaacaaagtgcaccgtggcccatggtggcctccctggcctccctg
tggccccttaaggcagagcggggcttaccagcacggcagccttgtggtca
gtcatggcttgcacaaaagccagagcctcaggagtggccgatctgatgtt
gtccacccgaccttcctggaagcggcggatggatgcactctcataggtgg
gcaccagcctctggtaaagcctgaacaagataaaagatggatggcaaaca
gtaatttgttctcagggagtcataaatcctgaaagagaaatagctccagc
aggctttattttcatagctctgacatgacgtggcacggtatttcatttta
atgttaatagaattctagaggagaattccagagatgaatgctgggaagtc
tttgatgtgaagaaccatgtacacttctatacactggggacactgcgttg
acataaaatgaagaggtgactggtttttaaacaaaacaaaacaaaacacc
accgccaatctgtagggaaacctggaattttctgtgagacctaatgagtg
ttgattaatatctcagggtcagatgagtgcagttttcaccccacaccttt
cacagaagcctgcttgacttaaatgggttcagccatgacctctagtcaaa
gtcagtaagttatggtggaggtgtggtcagatgccaggctccatcagggc
atcgaggtgttatctcaatggaaaactgtgtctgggatcctcacacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_33357628_33358834
seq2: B6Ng01-293L05.b_49_1259 (reverse)

seq1  CAAAACA---CCT--GGCCCACTGTTGCTGATTCTCC--AGGGTCACATG  43
      |||||||   |||  | ||||||||||| |||| |||  |||||  ||| 
seq2  CAAAACACACCCTTGGTCCCACTGTTGCGGATT-TCCAAAGGGTACCAT-  48

seq1  GAATCCAGTGTCCTTTCCTAATTCCTCAG-TTGCTGGTTTCTGAATTCTT  92
      ||||| || || | | |||||||| ||||  |||||| |||||||||  |
seq2  GAATCAAG-GT-CGTGCCTAATTCTTCAGAGTGCTGG-TTCTGAATTTCT  95

seq1  ACCATTTTAATAAAATTTGGACCCAAGGGAAAG-AAGAGTGTTGGCCCTG  141
      | |||||  |||||| |||||||||| |||||| ||||||||||||||||
seq2  A-CATTT--ATAAAA-TTGGACCCAAAGGAAAGAAAGAGTGTTGGCCCTG  141

seq1  T-GTTGGGTGGATTG-ATTTCAGGGTGGTTGCTAGGAGATCCT-GGGCCT  188
      | ||||||| ||||| |||||||||||| |||||||||||||| ||||||
seq2  TGGTTGGGT-GATTGAATTTCAGGGTGG-TGCTAGGAGATCCTGGGGCCT  189

seq1  -GCTTGG-AGCTGCTCCCATGGCGTCTCTGCTTTGGTAGGAGAAGGCCAG  236
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGAAGCTGCTCCCATGGCGTCTCTGCTTTGGTAGGAGAAGGCCAG  239

seq1  T-GCCTAGAATCCAGCCATTCTGGACTGT-GAGTG--CAAACAGTCTATT  282
      | ||||||||||||||||||||||||||| |||||   |||||||||| |
seq2  TGGCCTAGAATCCAGCCATTCTGGACTGTGGAGTGGCAAAACAGTCTA-T  288

seq1  TTGTTTTGTTTTCTTTATTTTTAATTTTTATTCTTTTGAGACATGGTATT  332
      |||||||||||   ||||||||||||||||||| ||||||||||||||||
seq2  TTGTTTTGTTT--CTTATTTTTAATTTTTATTC-TTTGAGACATGGTATT  335

seq1  ATCATGTAGTCTAGGGTGGTCAAAACTTGCAAGCCTCCTGCCTTA-GCCT  381
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCATGTAGTCTAGGGTGGTCAAAACTTGCAAGCCTCCTGCCTTAGGCCT  385

seq1  CTTATGTGTTAGGATTATGGGTATGTAAAGCCAGATTTTCTTCCAAGTCA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGTTAGGATTATGGGTATGTAAAGCCAGATTTTCTTCCAAGTCA  435

seq1  AGACTAACTCAGCCTTGGCATTCTTGACATTCTATTTTCTGTAAAAGGGA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAACTCAGCCTTGGCATTCTTGACATTCTATTTTCTGTAAAAGGGA  485

seq1  CTGACCGTAGTTTTATAGGATGAATAGCATCTCTGACTTCTGTTTACTAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCGTAGTTTTATAGGATGAATAGCATCTCTGACTTCTGTTTACTAG  535

seq1  GTACTAATTGTTCTTTGCCACTTGAAAAAAAAATGTCTGTTGATATTGCC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATTGTTCTTTGCCACTTGAAAAAAAAATGTCTGTTGATATTGCC  585

seq1  AAATGGCCCAAGGGAGCAAATTATCCCTGCTTCAGGACTGCTCTGCTAGA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCCAAGGGAGCAAATTATCCCTGCTTCAGGACTGCTCTGCTAGA  635

seq1  TTATTTCCAAAATGGGGTCACTTTGGAGTCATGTAGTTCTGGATTTCAAC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCAAAATGGGGTCACTTTGGAGTCATGTAGTTCTGGATTTCAAC  685

seq1  TTTGTTTGTGTGTCACTCTCCTCCCTTAACCCCTCCCTCTTTTCCTGAGC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTGTGTCACTCTCCTCCCTTAACCCCTCCCTCTTTTCCTGAGC  735

seq1  CTTTTCCTTCCTATAAAATATGCCACCAACCCCCACTGGAGCCTGCCTAG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTCCTATAAAATATGCCACCAACCCCCACTGGAGCCTGCCTAG  785

seq1  TCCAGAGCCTCCCTGCAGATAGGTCTGTTCAGTGGGAGACATTGTGGTCC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCCTCCCTGCAGATAGGTCTGTTCAGTGGGAGACATTGTGGTCC  835

seq1  CAGGGCATGCAATGCATCTATGGGGCTTGTCTTCTCAAATTGTCTTATTT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCATGCAATGCATCTATGGGGCTTGTCTTCTCAAATTGTCTTATTT  885

seq1  TTATATTTAATTGGGTTTTGATTTTTTAATTCTTCCTCCAAAGTGTATTT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTAATTGGGTTTTGATTTTTTAATTCTTCCTCCAAAGTGTATTT  935

seq1  TCAGTGTATTTATTATAATTAGCCAAACTAATAAGCAGTAAGTGTCTCAA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTATTTATTATAATTAGCCAAACTAATAAGCAGTAAGTGTCTCAA  985

seq1  AATTTTTCTTACACATGAGCAATGATGTTACCACCAGATTCACACTTAAT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTTACACATGAGCAATGATGTTACCACCAGATTCACACTTAAT  1035

seq1  TGACTTAATATCAAGAGAAAATTAATTATGGCACATCTACTGAAAGGAGT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAATATCAAGAGAAAATTAATTATGGCACATCTACTGAAAGGAGT  1085

seq1  TAAGTAGCAGCTCACCAAGAACCAAGGTTTGCAATGAGATGGGCTCATTT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGCAGCTCACCAAGAACCAAGGTTTGCAATGAGATGGGCTCATTT  1135

seq1  GTCTGACTGTGTGTCTGTCTGTTCCTTATCTCCCTCCCTCCCTTGTTTCA  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACTGTGTGTCTGTCTGTTCCTTATCTCCCTCCCTCCCTTGTTTCA  1185

seq1  AGGCAGACCTGGAACTCCTGGAATTC  1207
      ||||||||||||||||||||||||||
seq2  AGGCAGACCTGGAACTCCTGGAATTC  1211

seq1: chr14_33231742_33232836
seq2: B6Ng01-293L05.g_68_1165

seq1  GAATTCAAGGCCATCCTGGGCAACTTGATGAGACTCTGTTTCAAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCATCCTGGGCAACTTGATGAGACTCTGTTTCAAAATAAA  50

seq1  AAAGTTAAAAAAAAAGGACTCCCCAAATAGCTTAGTGCTACAGCACTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAAAAAAAAAGGACTCCCCAAATAGCTTAGTGCTACAGCACTTGC  100

seq1  CTAGCATGTGCAAAAGCCTGGATTAATCCCAGTGCCGTAAAAATAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATGTGCAAAAGCCTGGATTAATCCCAGTGCCGTAAAAATAAATAA  150

seq1  AATAAAAATGAATAAAAACGGGACGTGGTAGCCTTGCCGAGTCACTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATGAATAAAAACGGGACGTGGTAGCCTTGCCGAGTCACTGAGC  200

seq1  AGTTGGCGCTGCTGAGGAACGGCCACTCACCATGACTGTGTACTCAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCGCTGCTGAGGAACGGCCACTCACCATGACTGTGTACTCAGTTT  250

seq1  GGGCCTGGATGGCCCTCTGCAGCAGCTGCAGTTTCTCAGAAGCCTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGATGGCCCTCTGCAGCAGCTGCAGTTTCTCAGAAGCCTGTGAA  300

seq1  CAAAGAAGAGGTTCAGCCGTGGATGGCAGATGCAGCCAGGGAGTCCGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGAGGTTCAGCCGTGGATGGCAGATGCAGCCAGGGAGTCCGTGT  350

seq1  GTGTGGAACAAAGTGCACCGTGGCCCATGGTGGCCTCCCTGGCCTCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAACAAAGTGCACCGTGGCCCATGGTGGCCTCCCTGGCCTCCCTG  400

seq1  TGGCCCCTTAAGGCAGAGCGGGGCTTACCAGCACGGCAGCCTTGTGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTTAAGGCAGAGCGGGGCTTACCAGCACGGCAGCCTTGTGGTCA  450

seq1  GTCATGGCTTGCACAAAAGCCAGAGCCTCAGGAGTGGCCGATCTGATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGCTTGCACAAAAGCCAGAGCCTCAGGAGTGGCCGATCTGATGTT  500

seq1  GTCCACCCGACCTTCCTGGAAGCGGCGGATGGATGCACTCTCATAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCCGACCTTCCTGGAAGCGGCGGATGGATGCACTCTCATAGGTGG  550

seq1  GCACCAGCCTCTGGTAAAGCCTGAACAAGATAAAAGATGGATGGCAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGCCTCTGGTAAAGCCTGAACAAGATAAAAGATGGATGGCAAACA  600

seq1  GTAATTTGTTCTCAGGGAGTCATAAATCCTGAAAGAGAAATAGCTCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGTTCTCAGGGAGTCATAAATCCTGAAAGAGAAATAGCTCCAGC  650

seq1  AGGCTTTATTTTCATAGCTCTGACATGACGTGGCACGGTATTTCATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTATTTTCATAGCTCTGACATGACGTGGCACGGTATTTCATTTTA  700

seq1  ATGTTAATAGAATTCTAGAGGAGAATTCCAGAGATGAATGCTGGGAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATAGAATTCTAGAGGAGAATTCCAGAGATGAATGCTGGGAAGTC  750

seq1  TTTGATGTGAAGAACCATGTACACTTCTATACACTGGGGACACTGCGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTGAAGAACCATGTACACTTCTATACACTGGGGACACTGCGTTG  800

seq1  ACATAAAATGAAGAGGTGACTGGTTTTTAAACAAAACAAAACAAAACACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATGAAGAGGTGACTGGTTTTTAAACAAAACAAAACAAAACACC  850

seq1  ACCGCCAATCTGTAGGGAAACCTGGAATTTTCTGTGAGACCTAATGAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCAATCTGTAGGGAAACCTGGAATTTTCTGTGAGACCTAATGAGTG  900

seq1  TTGATTAATATCTCAGGGTCAGATGAGTGCAGTTTTTCACCCACACCTTT  950
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  TTGATTAATATCTCAGGGTCAGATGAGTGCAGTTTTCACCCCACACCTTT  950

seq1  CACAGAAGCCTGCTTGACTTTAAATGGTTCAGCCATGACCTCTAGTCAAA  1000
      |||||||||||||||||||| ||  |||||||||||||||||||||||||
seq2  CACAGAAGCCTGCTTGACTTAAATGGGTTCAGCCATGACCTCTAGTCAAA  1000

seq1  GTCAGTAAG-TATGGTG--AGTGTGGTCAGATGCCCAGGCT-CACCAGGG  1046
      ||||||||| |||||||   ||||||||||||| ||||||| || |||||
seq2  GTCAGTAAGTTATGGTGGAGGTGTGGTCAGATG-CCAGGCTCCATCAGGG  1049

seq1  CATCGAGGTG-TATCTCATGGGAAAAACTGTGTCTGGAATCCTCACACAT  1095
      |||||||||| |||||||  || |||||||||||||| ||||||||||||
seq2  CATCGAGGTGTTATCTCAATGG-AAAACTGTGTCTGGGATCCTCACACAT  1098