BAC Information

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BAC

Clone NameB6Ng01-293O06
Chromosome14 (Build37)
Map Location 39,179,423 - 39,307,314
singlet/doubletdoublet
Overlap geneNrg3, LOC100041521
Upstream geneLOC382871, LOC382872
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293O06.bB6Ng01-293O06.g
ACCGA090160GA090161
length5371,108
definitionB6Ng01-293O06.b B6Ng01-293O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,306,770 - 39,307,314)(39,179,423 - 39,180,540)
sequence
gaattcaggctaataagcatcacattttgattctatcacctatagttttt
gagacacacagcttgtctttttgaatgtcttcctgtggaattatattctt
gactttctatacatttaaaccaatatctatttgcaccttaaagcttacta
atatgagatttattttttttaatattttttattattatgtattttcctca
attacatttagaatgctatcctaaaagtcccccataccctcccccccact
tccctacccatgcattcccattttttggccctggcattcccctgtactgg
ggcacataaagtttgcgtgtcaaataggcctctctttccagtgatggccg
attaggccatcttttgatataatgtaaagcatcatgtattcatttcttga
catatagtcccatatatttaatgtatattagtgtatttgataagctctct
ctctttctctctctctctctctctctctctctctctctctctctctctct
ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattcacctggctgtctgacattagtgcatagagtgccttgttctcctt
aaacactctgcccttactagagttcagtgctaccataggtcaaaggcatt
gttagaatatatttaatttaaaaaaaaagcatttgagacaattatacaaa
tagagacagtaatcatttacacccatcatttaattgtaaatttaagagaa
tatctaacatatttcagtattggcttttgtgaaatttttaattcaaagat
gttcccgtttgactaaggagaatgaactgaaaatggttgtctgatgaacc
gttgccatttgtctggccatgaaggtttcacgaagtaaccacttggtgtt
cttcaaaggaagagaagataaggatatccaagtaatcaccctaatttaat
atttatattatgggcatagtcccagtaggaacgggtgagtgaaaatagat
gatataaatcaaagaaggggaatgtctttaccctcagtatttctttaaaa
gggaaagaatgggaaaaaaggaagagataaagcttatttgaaagcataat
tttccagggcaaactgagtgtttataaaattgagaacagtctagaaacct
tagactagtcttgcctgaaatgaggactgaatttctgaagacaagataca
aacagcacagacatactatctgttgaaaacactatactgaagctatacaa
ttgaataataataaaaattattctttatatataaaacgtttcccagatac
caaaaggtcaaataaaaatccctccccacctgctgtgttcttaggtatac
catatacttatttgagacagatttcttagcactgatcttaggttcagagg
gcgggaatcagagatcatcccacccccaccacacacacattaatgatttg
ttattcctatagcaccatatggcaagataagtgtatggtagtgactgcaa
ggattgaatgtagtctggtggagatctggttattggcagcctcacttttg
gcacagaaccttgtaaaattgtagctatacttcacaactcaggagtattc
tgaggtctgtatgtcctttactctttttggtcacatgtatataactactg
ggtgaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_39306770_39307314
seq2: B6Ng01-293O06.b_49_585 (reverse)

seq1  CACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGA  50
      |||||||||||||||||||||||||||||||||||        |||||||
seq2  CACACACACACACACACACACACACACACACACAC--------AGAGAGA  42

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGA  92

seq1  GCTTATCAAATACACTAATATACATTAAATATATGGGACTATATGTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCAAATACACTAATATACATTAAATATATGGGACTATATGTCAAG  142

seq1  AAATGAATACATGATGCTTTACATTATATCAAAAGATGGCCTAATCGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATACATGATGCTTTACATTATATCAAAAGATGGCCTAATCGGCC  192

seq1  ATCACTGGAAAGAGAGGCCTATTTGACACGCAAACTTTATGTGCCCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGGAAAGAGAGGCCTATTTGACACGCAAACTTTATGTGCCCCAGT  242

seq1  ACAGGGGAATGCCAGGGCCAAAAAATGGGAATGCATGGGTAGGGAAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAATGCCAGGGCCAAAAAATGGGAATGCATGGGTAGGGAAGTGG  292

seq1  GGGGGAGGGTATGGGGGACTTTTAGGATAGCATTCTAAATGTAATTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGTATGGGGGACTTTTAGGATAGCATTCTAAATGTAATTGAGG  342

seq1  AAAATACATAATAATAAAAAATATTAAAAAAAATAAATCTCATATTAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATAATAATAAAAAATATTAAAAAAAATAAATCTCATATTAGTA  392

seq1  AGCTTTAAGGTGCAAATAGATATTGGTTTAAATGTATAGAAAGTCAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAGGTGCAAATAGATATTGGTTTAAATGTATAGAAAGTCAAGAA  442

seq1  TATAATTCCACAGGAAGACATTCAAAAAGACAAGCTGTGTGTCTCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCCACAGGAAGACATTCAAAAAGACAAGCTGTGTGTCTCAAAAA  492

seq1  CTATAGGTGATAGAATCAAAATGTGATGCTTATTAGCCTGAATTC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGTGATAGAATCAAAATGTGATGCTTATTAGCCTGAATTC  537


seq1: chr14_39179423_39180540
seq2: B6Ng01-293O06.g_69_1176

seq1  GAATTCACCTGGCTGTCTGACATTAGTGCATAGAGTGCCTTGTTCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGGCTGTCTGACATTAGTGCATAGAGTGCCTTGTTCTCCTT  50

seq1  AAACACTCTGCCCTTACTAGAGTTCAGTGCTACCATAGGTCAAAGGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTCTGCCCTTACTAGAGTTCAGTGCTACCATAGGTCAAAGGCATT  100

seq1  GTTAGAATATATTTAATTTAAAAAAAAAGCATTTGAGACAATTATACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAATATATTTAATTTAAAAAAAAAGCATTTGAGACAATTATACAAA  150

seq1  TAGAGACAGTAATCATTTACACCCATCATTTAATTGTAAATTTAAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAGTAATCATTTACACCCATCATTTAATTGTAAATTTAAGAGAA  200

seq1  TATCTAACATATTTCAGTATTGGCTTTTGTGAAATTTTTAATTCAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAACATATTTCAGTATTGGCTTTTGTGAAATTTTTAATTCAAAGAT  250

seq1  GTTCCCGTTTGACTAAGGAGAATGAACTGAAAATGGTTGTCTGATGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCGTTTGACTAAGGAGAATGAACTGAAAATGGTTGTCTGATGAACC  300

seq1  GTTGCCATTTGTCTGGCCATGAAGGTTTCACGAAGTAACCACTTGGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATTTGTCTGGCCATGAAGGTTTCACGAAGTAACCACTTGGTGTT  350

seq1  CTTCAAAGGAAGAGAAGATAAGGATATCCAAGTAATCACCCTAATTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGGAAGAGAAGATAAGGATATCCAAGTAATCACCCTAATTTAAT  400

seq1  ATTTATATTATGGGCATAGTCCCAGTAGGAACGGGTGAGTGAAAATAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTATGGGCATAGTCCCAGTAGGAACGGGTGAGTGAAAATAGAT  450

seq1  GATATAAATCAAAGAAGGGGAATGTCTTTACCCTCAGTATTTCTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAATCAAAGAAGGGGAATGTCTTTACCCTCAGTATTTCTTTAAAA  500

seq1  GGGAAAGAATGGGAAAAAAGGAAGAGATAAAGCTTATTTGAAAGCATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAATGGGAAAAAAGGAAGAGATAAAGCTTATTTGAAAGCATAAT  550

seq1  TTTCCAGGGCAAACTGAGTGTTTATAAAATTGAGAACAGTCTAGAAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGGCAAACTGAGTGTTTATAAAATTGAGAACAGTCTAGAAACCT  600

seq1  TAGACTAGTCTTGCCTGAAATGAGGACTGAATTTCTGAAGACAAGATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGTCTTGCCTGAAATGAGGACTGAATTTCTGAAGACAAGATACA  650

seq1  AACAGCACAGACATACTATCTGTTGAAAACACTATACTGAAGCTATACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACAGACATACTATCTGTTGAAAACACTATACTGAAGCTATACAA  700

seq1  TTGAATAATAATAAAAATTATTCTTTATATATAAAACGTTTCCCAGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAATAATAAAAATTATTCTTTATATATAAAACGTTTCCCAGATAC  750

seq1  CAAAAGGTCAAATAAAAATCCCTCCCCACCTGCTGTGTTCTTAGGTATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTCAAATAAAAATCCCTCCCCACCTGCTGTGTTCTTAGGTATAC  800

seq1  CATATACTTATTTGAGACAGATTTCTTAGCACTGATCTTAGGTTCAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTTATTTGAGACAGATTTCTTAGCACTGATCTTAGGTTCAGAGG  850

seq1  GCGGGAATCAGAGATCATCCCACCCCCACCACACACACATTAATGATTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAATCAGAGATCATCCCACCCCCACCACACACACATTAATGATTTG  900

seq1  TTATTCCTATAGCACCATATGGCAAGATAAGTGTATGGTAGTGACTGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTATAGCACCATATGGCAAGATAAGTGTATGGTAGTGACTGCAA  950

seq1  GGATTGAATGTAGTCTGGTGGAGATCTGGTTATTGGCAGCCTCAACTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GGATTGAATGTAGTCTGGTGGAGATCTGGTTATTGGCAGCCTC-ACTTTT  999

seq1  GGCACCAGAACCCTTGTAAAATTGTAGCTATTAACTTCACAACTCAGGGA  1050
      |||| ||||| ||||||||||||||||||||  ||||||||||||| |||
seq2  GGCA-CAGAA-CCTTGTAAAATTGTAGCTAT--ACTTCACAACTCA-GGA  1044

seq1  GTATTCTGAAGTCTGTATGGCCCTTTTACTCTTTTTGGTCAACATGTTAT  1100
      ||||||||| ||||||||| ||  |||||||||||||||| ||||| |||
seq2  GTATTCTGAGGTCTGTATGTCC--TTTACTCTTTTTGGTC-ACATG-TAT  1090

seq1  ATAACTACTGTGTGAAGG  1118
      |||||||||| |||||||
seq2  ATAACTACTGGGTGAAGG  1108


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