BAC Information

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BAC

Clone NameB6Ng01-294B11
Chromosome14 (Build37)
Map Location 69,439,095 - 69,602,991
singlet/doubletdoublet
Overlap genenone
Upstream geneDock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
Downstream geneStc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294B11.bB6Ng01-294B11.g
ACCGA090309GA090310
length1,1211,102
definitionB6Ng01-294B11.b B6Ng01-294B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,601,860 - 69,602,991)(69,439,095 - 69,440,209)
sequence
gaattcttcagaatctactttattatttgagcttctggcaaccagttcct
gtaagtgcagaagacagcccagagacactgtagttccttatacctataag
gaactttacgtatggttttaaggtgacatcattaaagggtttattaggaa
tggctgaattaatattaaataggcagttaactgagcaacaagagccatac
atatagccacagacagtataagatggtcctactgtctcatgtaggagaat
aaagagtcctgaaacatgatgaagaatataggtgtgccctggccttgtag
gcatcttatttagtcttaggttctgtaaaatcctccttttctttttgtag
aacccatgagagatgttctggatcttattcaagtctacctagggatgtat
gttttaattaggatttaaacattattttaaaatatgtatatagggggttg
tgcgggtgagtgcagtgtctatagaggattaatttttttttcctgaagct
ggagttataggtgttttttggccacccctgtgggtgctgagaacccaact
ctagtcctctgacagagcagcatgtgttcttaaccactgagacatctctc
ctgcccctttgatcgacatttttatttaaattacctcatgatatgcagtt
gttccaatttcatacttaaagtgtagagctaattaaaattacagctttga
aaatcaggctgtctgggtttgaatttggggctctgttgtacaaactccat
gaccttggacatctgaatctctgtgtgtctccatctttgaaacagatata
agaatagaatcacacccataggctaacagggggagtggatgagacagtta
tgtgcttacaatctgagtgatgtcaacttgagttacctcttaagggcagc
catgctagtgctcagtacttcaccctgcaggtgacatattggggcccagg
gccatctgattctttcccagtcttatcaaatatcactacagtgccagtga
ctcagaaagcttttctctattgcttgcattctgtgacatctcgtgggaga
gctttcttgttctcgctttgtagaaaagaagaaacttccgtgattgataa
gatgggaagagttctttcacc
gaattcagtttcttaggcttgacaacaaccatcttcattcacttggcctc
tcatcagcccttgggtttctattttattacccaggaaactattcaacttg
taaaggtatatacgatttcgccaaggtcacaggacgtgggccccaagtac
taacctgtgcatattatcttcagcaacaatctacctagtttgttattata
tttatggaagaaatttgactttgcaaaaaaaaaccaaaaagctccaatac
agagtagactggtgtgttaagcaatctggaaagaaagcaaacaaaagaat
aaacagcttggttttctccagactgaaagagtgaagaggacttttatatt
ttgatttcctccacttaacaaagaaatggcaatggtttttatctccacca
gattagaaggatttctaagccctttaaagacagggaatataatataaata
gacatttacctgatttctctatatccaaggcacaataagttgtcacactc
aatgttcttaggtatttagaaaaaattaaattttcccaaaccaagataaa
taaatggtaaaaataggtctctattccaaaaataattaaagatttaattg
tgtgctaagaaggtataaaatataccaatcgggttcagagtcacagggaa
tgtattatacctcaagggtctcattagaaacttacttggtcggtttggct
aagatcacaggacttgtgtcccaagtactgaactcaaaatgagatctttt
gacaaatatgtcttctactaaactcttacctccaacccttctcttggttt
gttttctgctattataatagaacatgagtattatgtctgggtaatgtata
agcaaaaaggatttacaaaattcacagttctagggttcagaggttcacat
tatcacactgtcttagttctgaggactttgtgacatatggtgggatacat
ccagacagatcacatgctagactggagcagagatcagaaaaagtagcttt
gtgcttgacacactccacattctcaaaactactctgtccctgacaacatt
agccacatatgacttatagcaagtcctcatcacttttgttagaagagtaa
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_69601860_69602991
seq2: B6Ng01-294B11.b_48_1168 (reverse)

seq1  GGTGAAAAGGACTCTTTTTCATCTTTTATTCAATCCACGG-AGTGTCTTC  49
      |||| |||| |||| ||  ||||||    ||||| ||||| ||| |||||
seq2  GGTG-AAAGAACTC-TTCCCATCTT---ATCAAT-CACGGAAGTTTCTTC  44

seq1  -TTTCTACCAAAAGCGAGAACAAGAAAGCTCTCCCACGGAGATGTCACAG  98
       |||||||  ||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTCTAC--AAAGCGAGAACAAGAAAGCTCTCCCAC-GAGATGTCACAG  91

seq1  AATGCAAGGCAAATTAGAGAAAAGCCTTTCCTGAGTCACTGGCACTGTAG  148
      ||||||| ||||  |||||||||||  || ||||||||||||||||||||
seq2  AATGCAA-GCAA--TAGAGAAAAGC--TTTCTGAGTCACTGGCACTGTAG  136

seq1  TGGATATTTGATAAGACTGGG-AAGAATCAGATGGCCCTGGG-CCCAATA  196
      | ||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  T-GATATTTGATAAGACTGGGAAAGAATCAGATGGCCCTGGGCCCCAATA  185

seq1  TGTCACCTGCAGGGTGAAGTACTGAGCACTAGCATGGCTGCCCTTAAGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTGCAGGGTGAAGTACTGAGCACTAGCATGGCTGCCCTTAAGAG  235

seq1  GTAACTCAAGTTGACATCACTCAGATTGTAAGCACATAACTGTCTCATCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCAAGTTGACATCACTCAGATTGTAAGCACATAACTGTCTCATCC  285

seq1  ACTCCCCCTGTTAGCCTATGGGTGTGATTCTATTCTTATATCTGTTTCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCCTGTTAGCCTATGGGTGTGATTCTATTCTTATATCTGTTTCAA  335

seq1  AGATGGAGACACACAGAGATTCAGATGTCCAAGGTCATGGAGTTTGTACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGACACACAGAGATTCAGATGTCCAAGGTCATGGAGTTTGTACA  385

seq1  ACAGAGCCCCAAATTCAAACCCAGACAGCCTGATTTTCAAAGCTGTAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCCCAAATTCAAACCCAGACAGCCTGATTTTCAAAGCTGTAATT  435

seq1  TTAATTAGCTCTACACTTTAAGTATGAAATTGGAACAACTGCATATCATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGCTCTACACTTTAAGTATGAAATTGGAACAACTGCATATCATG  485

seq1  AGGTAATTTAAATAAAAATGTCGATCAAAGGGGCAGGAGAGATGTCTCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTTAAATAAAAATGTCGATCAAAGGGGCAGGAGAGATGTCTCAG  535

seq1  TGGTTAAGAACACATGCTGCTCTGTCAGAGGACTAGAGTTGGGTTCTCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGAACACATGCTGCTCTGTCAGAGGACTAGAGTTGGGTTCTCAG  585

seq1  CACCCACAGGGGTGGCCAAAAAACACCTATAACTCCAGCTTCAGGAAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAGGGGTGGCCAAAAAACACCTATAACTCCAGCTTCAGGAAAAA  635

seq1  AAAATTAATCCTCTATAGACACTGCACTCACCCGCACAACCCCCTATATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATCCTCTATAGACACTGCACTCACCCGCACAACCCCCTATATA  685

seq1  CATATTTTAAAATAATGTTTAAATCCTAATTAAAACATACATCCCTAGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTAAAATAATGTTTAAATCCTAATTAAAACATACATCCCTAGGT  735

seq1  AGACTTGAATAAGATCCAGAACATCTCTCATGGGTTCTACAAAAAGAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAATAAGATCCAGAACATCTCTCATGGGTTCTACAAAAAGAAAA  785

seq1  GGAGGATTTTACAGAACCTAAGACTAAATAAGATGCCTACAAGGCCAGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTTTACAGAACCTAAGACTAAATAAGATGCCTACAAGGCCAGGG  835

seq1  CACACCTATATTCTTCATCATGTTTCAGGACTCTTTATTCTCCTACATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTATATTCTTCATCATGTTTCAGGACTCTTTATTCTCCTACATGA  885

seq1  GACAGTAGGACCATCTTATACTGTCTGTGGCTATATGTATGGCTCTTGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGGACCATCTTATACTGTCTGTGGCTATATGTATGGCTCTTGTT  935

seq1  GCTCAGTTAACTGCCTATTTAATATTAATTCAGCCATTCCTAATAAACCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTAACTGCCTATTTAATATTAATTCAGCCATTCCTAATAAACCC  985

seq1  TTTAATGATGTCACCTTAAAACCATACGTAAAGTTCCTTATAGGTATAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGATGTCACCTTAAAACCATACGTAAAGTTCCTTATAGGTATAAG  1035

seq1  GAACTACAGTGTCTCTGGGCTGTCTTCTGCACTTACAGGAACTGGTTGCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACAGTGTCTCTGGGCTGTCTTCTGCACTTACAGGAACTGGTTGCC  1085

seq1  AGAAGCTCAAATAATAAAGTAGATTCTGAAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCAAATAATAAAGTAGATTCTGAAGAATTC  1121

seq1: chr14_69439095_69440209
seq2: B6Ng01-294B11.g_70_1171

seq1  GAATTCAGTTTCTTAGGCTTGACAACAACCATCTTCATTCACTTGGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTTAGGCTTGACAACAACCATCTTCATTCACTTGGCCTC  50

seq1  TCATCAGCCCTTGGGTTTCTATTTTATTACCCAGGAAACTATTCAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCCCTTGGGTTTCTATTTTATTACCCAGGAAACTATTCAACTTG  100

seq1  TAAAGGTATATACGATTTCGCCAAGGTCACAGGACGTGGGCCCCAAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTATATACGATTTCGCCAAGGTCACAGGACGTGGGCCCCAAGTAC  150

seq1  TAACCTGTGCATATTATCTTCAGCAACAATCTACCTAGTTTGTTATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTGCATATTATCTTCAGCAACAATCTACCTAGTTTGTTATTATA  200

seq1  TTTATGGAAGAAATTTGACTTTGCAAAAAAAAACCAAAAAGCTCCAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGAAGAAATTTGACTTTGCAAAAAAAAACCAAAAAGCTCCAATAC  250

seq1  AGAGTAGACTGGTGTGTTAAGCAATCTGGAAAGAAAGCAAACAAAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGACTGGTGTGTTAAGCAATCTGGAAAGAAAGCAAACAAAAGAAT  300

seq1  AAACAGCTTGGTTTTCTCCAGACTGAAAGAGTGAAGAGGACTTTTATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTGGTTTTCTCCAGACTGAAAGAGTGAAGAGGACTTTTATATT  350

seq1  TTGATTTCCTCCACTTAACAAAGAAATGGCAATGGTTTTTATCTCCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCCTCCACTTAACAAAGAAATGGCAATGGTTTTTATCTCCACCA  400

seq1  GATTAGAAGGATTTCTAAGCCCTTTAAAGACAGGGAATATAATATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAAGGATTTCTAAGCCCTTTAAAGACAGGGAATATAATATAAATA  450

seq1  GACATTTACCTGATTTCTCTATATCCAAGGCACAATAAGTTGTCACACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTACCTGATTTCTCTATATCCAAGGCACAATAAGTTGTCACACTC  500

seq1  AATGTTCTTAGGTATTTAGAAAAAATTAAATTTTCCCAAACCAAGATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTTAGGTATTTAGAAAAAATTAAATTTTCCCAAACCAAGATAAA  550

seq1  TAAATGGTAAAAATAGGTCTCTATTCCAAAAATAATTAAAGATTTAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTAAAAATAGGTCTCTATTCCAAAAATAATTAAAGATTTAATTG  600

seq1  TGTGCTAAGAAGGTATAAAATATACCAATCGGGTTCAGAGTCACAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAAGAAGGTATAAAATATACCAATCGGGTTCAGAGTCACAGGGAA  650

seq1  TGTATTATACCTCAAGGGTCTCATTAGAAACTTACTTGGTCGGTTTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATACCTCAAGGGTCTCATTAGAAACTTACTTGGTCGGTTTGGCT  700

seq1  AAGATCACAGGACTTGTGTCCCAAGTACTGAACTCAAAATGAGATCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACAGGACTTGTGTCCCAAGTACTGAACTCAAAATGAGATCTTTT  750

seq1  GACAAATATGTCTTCTACTAAACTCTTACCTCCAACCCTTCTCTTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATATGTCTTCTACTAAACTCTTACCTCCAACCCTTCTCTTGGTTT  800

seq1  GTTTTCTGCTATTATAATAGAACATGAGTATTATGTCTGGGTAATGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGCTATTATAATAGAACATGAGTATTATGTCTGGGTAATGTATA  850

seq1  AGCAAAAAGGATTTACAAAATTCACAGTTCTAGGGGTTCAGAGGTTCACA  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCAAAAAGGATTTACAAAATTCACAGTTCTA-GGGTTCAGAGGTTCACA  899

seq1  TTATCACACTGTCTTAGTTCTGAGGACTTTGTGACATAATGGTGGGAATA  950
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  TTATCACACTGTCTTAGTTCTGAGGACTTTGTGACAT-ATGGTGGG-ATA  947

seq1  CATCCAGACAAGATCACATGCTAAGACTGGAAGGCAGAGATCAGGAAAAA  1000
      ||||||||| |||||||||||| ||||||||  |||||||||| ||||||
seq2  CATCCAGAC-AGATCACATGCT-AGACTGGA--GCAGAGATCA-GAAAAA  992

seq1  GTTAGCTTTGTGGCTTGACAACAACTCACATTCTCAAAAACTAACTCTGT  1050
      | ||||||||| ||||||| |||   ||||||||| |||||| |||||||
seq2  G-TAGCTTTGT-GCTTGAC-ACACTCCACATTCTC-AAAACT-ACTCTGT  1037

seq1  CCCTGACAACATTAG-CACATATGAACTATAGCAGGT-CTCATCAACTTT  1098
      ||||||||||||||| |||||||||  ||||||| || |||||||   ||
seq2  CCCTGACAACATTAGCCACATATGACTTATAGCAAGTCCTCATCA--CTT  1085

seq1  TTGTAGGAAGAGTAATA  1115
      ||||  |||||||||||
seq2  TTGTTAGAAGAGTAATA  1102