BAC Information

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BAC

Clone NameB6Ng01-294E14
Chromosome14 (Build37)
Map Location 88,541,669 - 88,677,518
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665324, Tdrd3, LOC100043317, LOC100043780
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294E14.bB6Ng01-294E14.g
ACCGA090455GA090456
length1,1821,141
definitionB6Ng01-294E14.b B6Ng01-294E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,676,319 - 88,677,518)(88,541,669 - 88,542,817)
sequence
gaattcattcattttctgatatatctacatattacccagtgcatctttgt
taacacaatttccactagttacaatgacaaaacttcatggtggctaataa
caaagtcacctagccactagttgcagaaaccagcaccgttaaacttccaa
tttcaggatttcaggaattgagggattctttttattcccccagatagtat
ataaacaagttactttgtaaagataaaaaggaaatgacaataatttcaat
acaaatttgcaaccttgactcaaaacattgatcacacataagcttaagaa
aagaatgtacaataaaaacaaaaacaatgtattataattagacacatggc
tgaggcaactatcagaagagaagagcagaaaggagctggttaatactgta
caaattctaccatcagtcttcttcatacttgcgtagcaattattaatagt
ccaccacctagttgtaggaaatacattttcaataaactgagactgtgtgt
ttaagaagcatctactaaatattaaacttcattttgactaggttttaaat
aagagcttagtacatgtcctttggcagtcagcatatggttagttactctt
gatttgagagaactgaaagacctggggaaacaacatttaataaatgagtt
caagtgatttcaatttgttgtagtggaaattttctggatgatgtaatagt
cccatgttagttctgatttctggacagaaacaaaagtgtcagttcaaaac
caaaaacgtaggcaagagaaaaaaatctagcaacagctgggcaagaagga
aaaccacagccttcctcagagtgaccagcttcgtgactgccaaatttaac
tccaaatacaagagattatgatttaagtttacctgagaatttaggcatca
ccaaaaatacaagtgacaatgatattataccaactgcagataaaaaagtt
catatgaagtcaatatatttcaaaattaattatatattaacatataacac
aggatcagtatatcttcatatgtagagtgatattttcttgtgagcaaata
aagtgtatcttatttgtgcagtcaatattttatgctagccgattatgttc
aaaagtctcctttgtcaacagttatttgtcattcaaacactgctgaagtt
ggctcggcatagcaaaccagggaattccaatg

gaattcttacgaatatttgatatgcttaagctactctctccttggttgta
gatctctgtatatcaattcaccatatgttgtgtttgaattatgaaaaata
aactaggtagacaattttgaagctaaaataactaacaataaaaaacagct
gggtgttataaaaatgtaaaatttaattaaaaattagctccgctgtgcat
agtgatcaacaccataaccctctaaaccataaagttcctactttgaaaga
ttttgactagaaatattcacataaacaggaagagctcatgatattagtaa
gatactattccttcaggctttgttgtctggaactgtgcaattggtataag
gacctaaacttttaaattttatgagttgttttagcagtatgtagtctgtc
atttgggatttggccatgactattcaaagaaagtgtgtgataaactaagc
cagtattgaaagaaatagaattatattgcacaaaagccacagaattggag
aaacagagtgaaacacacgttggatatgcattctacttgctgatgtgtgt
ccttggtcactcatagaacccctccatctttaggttttcctaacgttgat
aggcagctatggagacttgtgatgcatacttttgtgtaaggaaagtaaac
caatcttgtaagactttggaatgctaatcaaaatttctggcagagtactc
agtttaagttttcattcaccatatggaacggtgtcaatgtttattgcaaa
aaggaaaaaaaaagtgagtttgcattaccatgttaacacaagtaatatcg
gtgtgtcaggcaatttttcttctgttagcgaagaatttataatactgatt
cttattagaagaataccatttcaaagctgagaaaatgactttttcttctc
atgcatgtatatagctgttatcttaataaagttgtattacattgcttatt
tgcatcgattccgatttctggaatttccattatgtaaatttagtctaaaa
caaaaatcactttgtatggccattgcattttcaatttaaaggttagcttc
atttataaccccttcccccaaagctcaagtttctgcatacctttgtcaat
ttacaggttattatataaataactggcatgaatgtatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_88676319_88677518
seq2: B6Ng01-294E14.b_48_1229 (reverse)

seq1  CATTGGATCTCCTGTGTTTGCTATTGCCGAGCAGACTCTCAGCAAATGGT  50
      |||||||  |||   |||||||| ||||||||  ||| ||||| | || |
seq2  CATTGGAATTCCCTGGTTTGCTA-TGCCGAGCCAACT-TCAGC-AGTGTT  47

seq1  TGAATGACAAAATAACTGTTGACAAAGGAAGACTTTTTAAACATAAATCG  100
      |||||||| ||||||||||||||||||| |||| |||| ||||| |||| 
seq2  TGAATGAC-AAATAACTGTTGACAAAGG-AGAC-TTTTGAACAT-AATC-  92

seq1  GGCTACCCATAAATATGAACTGCAACAAATAAGATACACTTTAATTTGCT  150
      ||||| |   ||||||  ||||| |||||||||||||||||| |||||| 
seq2  GGCTAGCATAAAATATTGACTGC-ACAAATAAGATACACTTT-ATTTGC-  139

seq1  TCACAAG-AAATATCAACTCTAACAATATTGAAGATATACTGATCCTGTT  199
      ||||||| ||||||| ||||||   ||| ||||||||||||||||||| |
seq2  TCACAAGAAAATATC-ACTCTA--CATA-TGAAGATATACTGATCCTG-T  184

seq1  GTTATATGTTAATTATATAATTAATTTTGAAATATATTGACTTCATATTG  249
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  GTTATATGTTAA-TATATAATTAATTTTGAAATATATTGACTTCATA-TG  232

seq1  AACTTTTTTATCTGCAGTTGGTATAATATCATTGTCACTTTGTATTTTTG  299
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACTTTTTTATCTGCAGTTGGTATAATATCATTGTCAC-TTGTATTTTTG  281

seq1  GTGATGCCTAAATTCTCAGGTAAACTTAAATCATAATCTCTTGTATTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCCTAAATTCTCAGGTAAACTTAAATCATAATCTCTTGTATTTGG  331

seq1  AGTTAAATTTGGCAGTCACGAAGCTGGTCACTCTGAGGAAGGCTGTGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATTTGGCAGTCACGAAGCTGGTCACTCTGAGGAAGGCTGTGGTT  381

seq1  TTCCTTCTTGCCCAGCTGTTGCTAGATTTTTTTCTCTTGCCTACGTTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTGCCCAGCTGTTGCTAGATTTTTTTCTCTTGCCTACGTTTTT  431

seq1  GGTTTTGAACTGACACTTTTGTTTCTGTCCAGAAATCAGAACTAACATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGAACTGACACTTTTGTTTCTGTCCAGAAATCAGAACTAACATGG  481

seq1  GACTATTACATCATCCAGAAAATTTCCACTACAACAAATTGAAATCACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTACATCATCCAGAAAATTTCCACTACAACAAATTGAAATCACTT  531

seq1  GAACTCATTTATTAAATGTTGTTTCCCCAGGTCTTTCAGTTCTCTCAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATTTATTAAATGTTGTTTCCCCAGGTCTTTCAGTTCTCTCAAAT  581

seq1  CAAGAGTAACTAACCATATGCTGACTGCCAAAGGACATGTACTAAGCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTAACTAACCATATGCTGACTGCCAAAGGACATGTACTAAGCTCT  631

seq1  TATTTAAAACCTAGTCAAAATGAAGTTTAATATTTAGTAGATGCTTCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAACCTAGTCAAAATGAAGTTTAATATTTAGTAGATGCTTCTTA  681

seq1  AACACACAGTCTCAGTTTATTGAAAATGTATTTCCTACAACTAGGTGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAGTCTCAGTTTATTGAAAATGTATTTCCTACAACTAGGTGGTG  731

seq1  GACTATTAATAATTGCTACGCAAGTATGAAGAAGACTGATGGTAGAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTAATAATTGCTACGCAAGTATGAAGAAGACTGATGGTAGAATTT  781

seq1  GTACAGTATTAACCAGCTCCTTTCTGCTCTTCTCTTCTGATAGTTGCCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTATTAACCAGCTCCTTTCTGCTCTTCTCTTCTGATAGTTGCCTC  831

seq1  AGCCATGTGTCTAATTATAATACATTGTTTTTGTTTTTATTGTACATTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTGTCTAATTATAATACATTGTTTTTGTTTTTATTGTACATTCT  881

seq1  TTTCTTAAGCTTATGTGTGATCAATGTTTTGAGTCAAGGTTGCAAATTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGCTTATGTGTGATCAATGTTTTGAGTCAAGGTTGCAAATTTG  931

seq1  TATTGAAATTATTGTCATTTCCTTTTTATCTTTACAAAGTAACTTGTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAATTATTGTCATTTCCTTTTTATCTTTACAAAGTAACTTGTTTA  981

seq1  TATACTATCTGGGGGAATAAAAAGAATCCCTCAATTCCTGAAATCCTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTATCTGGGGGAATAAAAAGAATCCCTCAATTCCTGAAATCCTGAA  1031

seq1  ATTGGAAGTTTAACGGTGCTGGTTTCTGCAACTAGTGGCTAGGTGACTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGTTTAACGGTGCTGGTTTCTGCAACTAGTGGCTAGGTGACTTT  1081

seq1  GTTATTAGCCACCATGAAGTTTTGTCATTGTAACTAGTGGAAATTGTGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAGCCACCATGAAGTTTTGTCATTGTAACTAGTGGAAATTGTGTT  1131

seq1  AACAAAGATGCACTGGGTAATATGTAGATATATCAGAAAATGAATGAATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGATGCACTGGGTAATATGTAGATATATCAGAAAATGAATGAATT  1181

seq1  C  1200
      |
seq2  C  1182


seq1: chr14_88541669_88542817
seq2: B6Ng01-294E14.g_68_1208

seq1  GAATTCTTACGAATATTTGATATGCTTAAGCTACTCTCTCCTTGGTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACGAATATTTGATATGCTTAAGCTACTCTCTCCTTGGTTGTA  50

seq1  GATCTCTGTATATCAATTCACCATATGTTGTGTTTGAATTATGAAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGTATATCAATTCACCATATGTTGTGTTTGAATTATGAAAAATA  100

seq1  AACTAGGTAGACAATTTTGAAGCTAAAATAACTAACAATAAAAAACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTAGACAATTTTGAAGCTAAAATAACTAACAATAAAAAACAGCT  150

seq1  GGGTGTTATAAAAATGTAAAATTTAATTAAAAATTAGCTCCGCTGTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTATAAAAATGTAAAATTTAATTAAAAATTAGCTCCGCTGTGCAT  200

seq1  AGTGATCAACACCATAACCCTCTAAACCATAAAGTTCCTACTTTGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAACACCATAACCCTCTAAACCATAAAGTTCCTACTTTGAAAGA  250

seq1  TTTTGACTAGAAATATTCACATAAACAGGAAGAGCTCATGATATTAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTAGAAATATTCACATAAACAGGAAGAGCTCATGATATTAGTAA  300

seq1  GATACTATTCCTTCAGGCTTTGTTGTCTGGAACTGTGCAATTGGTATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATTCCTTCAGGCTTTGTTGTCTGGAACTGTGCAATTGGTATAAG  350

seq1  GACCTAAACTTTTAAATTTTATGAGTTGTTTTAGCAGTATGTAGTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAACTTTTAAATTTTATGAGTTGTTTTAGCAGTATGTAGTCTGTC  400

seq1  ATTTGGGATTTGGCCATGACTATTCAAAGAAAGTGTGTGATAAACTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGATTTGGCCATGACTATTCAAAGAAAGTGTGTGATAAACTAAGC  450

seq1  CAGTATTGAAAGAAATAGAATTATATTGCACAAAAGCCACAGAATTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGAAAGAAATAGAATTATATTGCACAAAAGCCACAGAATTGGAG  500

seq1  AAACAGAGTGAAACACACGTTGGATATGCATTCTACTTGCTGATGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGTGAAACACACGTTGGATATGCATTCTACTTGCTGATGTGTGT  550

seq1  CCTTGGTCACTCATAGAACCCCTCCATCTTTAGGTTTTCCTAACGTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCACTCATAGAACCCCTCCATCTTTAGGTTTTCCTAACGTTGAT  600

seq1  AGGCAGCTATGGAGACTTGTGATGCATACTTTTGTGTAAGGAAAGTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTATGGAGACTTGTGATGCATACTTTTGTGTAAGGAAAGTAAAC  650

seq1  CAATCTTGTAAGACTTTGGAATGCTAATCAAAATTTCTGGCAGAGTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTGTAAGACTTTGGAATGCTAATCAAAATTTCTGGCAGAGTACTC  700

seq1  AGTTTAAGTTTTCATTCACCATATGGAACGGTGTCAATGTTTATTGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGTTTTCATTCACCATATGGAACGGTGTCAATGTTTATTGCAAA  750

seq1  AAGGAAAAAAAAAGTGAGTTTGCATTACCATGTTAACACAAGTAATATCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAAAAGTGAGTTTGCATTACCATGTTAACACAAGTAATATCG  800

seq1  GTGTGTCAGGCAA-TTTTCTTCTGTTAGCGAAGAATTTATAATACTGATT  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAGGCAATTTTTCTTCTGTTAGCGAAGAATTTATAATACTGATT  850

seq1  CTTATTAGAAGAATACCATTTCAAAGCTGAGAAAATGACTTTTTCTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGAAGAATACCATTTCAAAGCTGAGAAAATGACTTTTTCTTCTC  900

seq1  ATGCATGTATATAGCTGTTATCTTAATAAAGTTGTTATTACATTGCTTAT  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGCATGTATATAGCTGTTATCTTAATAAAGTTG-TATTACATTGCTTAT  949

seq1  TTGCATCGATTCCGATTTCCTGGAATTTCCATTATGTAAATTTAGTCT-A  998
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  TTGCATCGATTCCGATTT-CTGGAATTTCCATTATGTAAATTTAGTCTAA  998

seq1  CACAAAAATCACTTTGTATGGCAATTGCATTTTCAATTTAAAAGTTAGCT  1048
       ||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  AACAAAAATCACTTTGTATGGCCATTGCATTTTCAATTTAAAGGTTAGCT  1048

seq1  TCATTTTAATACCCCTCCCCCAAGCTTCAAAGTTTTCCTTGCAATAACTT  1098
      ||||||  |  ||| ||||||||   || ||||||    ||| ||| |||
seq2  TCATTTATAACCCCTTCCCCCAAAGCTC-AAGTTT---CTGC-ATACCTT  1093

seq1  TGTCCATTTACAGTTTATTATATAAATAACTGGGATGAAAATGATATATA  1148
      |||| |||||||| ||||||||||||||||||| |||  |||| ||||||
seq2  TGTCAATTTACAGGTTATTATATAAATAACTGGCATG--AATG-TATATA  1140

seq1  T  1149
      |
seq2  T  1141


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