BAC Information

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BAC

Clone NameB6Ng01-296A23
Chromosome14 (Build37)
Map Location 39,606,181 - 39,734,416
singlet/doubletdoublet
Overlap geneNrg3
Upstream geneLOC382872, LOC100041521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296A23.bB6Ng01-296A23.g
ACCGA091766GA091767
length1,1521,104
definitionB6Ng01-296A23.b B6Ng01-296A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,606,181 - 39,607,336)(39,733,315 - 39,734,416)
sequence
gaattctcacctgaggaataccaaatggctgagaaacacctgaaaaatgt
tcaacatcattaatcatcagggatttccccaaatcaaaacaacgttgaga
ttccacctcacaacagtcagaatggctaagataaaaaattcaggtgacag
gaaatgctggcaaggatgtggagatagagggatactcttccattattggt
gggattgcaagcgggtacaaccactctggaaatcagtttggcagttcctc
aggaaattggacatagtactaccagaggatccagcaataccactactggg
catatacccagaagatggtccaacttgtaataagggcacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaaaaaaaacac
agatgtgcttcactattttaatatacactttgacaaacttacaaatgctt
tattctgtttctgatttgaaatttcaaatcccccagggacaattttttcc
aaagcaaaggaccactacctatcctcatttctctttttatatcattgcta
gatacactcattctatctacacgtccatgctgaaactttcttctcttgcc
ttccatgatactaaatttgtctgagtctcttttgttattctctacatagc
tttatttttattccagaattctatgtatattagtacagtaaataagaatt
actagaagtgtcaaaggctttggaagataatttcaatctcatagacgcaa
acttgaaggcataatggcttttgttttgttttgttttgtttttaatcttt
ttttcctacccagtcaaccgcacggcatgtagaaaagtttggatttgatc
catgcaattgcctttctgaaaatctgatttgattgcttacaagatgatgt
ttattgttatattttctctggggaacaggatggatttgtctacccaagag
agaaataactgggcatctgcaagttattccattacaagggcagagtcgga
ctagacttcaatttgcacacaatctccccagctcctaccctataaaatca
ctcaccacttgcttgtagcaagatatttaaatttcatttatattgtccag
aacatgatacatcaacataggtcttgggagattctatgtgccatgcttag
aa

gaattctcagcagaagcaaaaatagcatgactccagcttgggaaatattc
tactctgagagtgatatgcacctccaagtcatgtggttcaggttttcttt
cttccactttgcaatttttgacactaagtgataattatagagctgagagg
cacccagcacatttgcaggaactaattgagtcagtgtagaaaaggctgat
tgtgcagtagactataaactaccaattaaaagagaaggaaatcacatgca
cggggtgtcttaggtatttatatcacagtggcaacattccctatctctat
tgaaatcatcagcatgtcaacaggcctggccacttgattctcagttccaa
gtctaggtctagccaagacaactgcaagtaccagaaagttcactgtcttt
gtcccacctgactggatatggggaggataagaaacataaattcaatgcat
aatgagagaaatcaggagcagatccatgtatcaattaactgccagtgcaa
aaagaaactcccaagacactaagaaaactagctttggtacagtgcatggt
gttaacagacaatgaacatttcgaaagtaagactattactaccagcttcc
agagagtcggggccaggcttaacatcccacagatactggagctaaacgtt
ccaggatataactacaggattttggcacctacttcatctctacatcttcc
tatgcatatagaataagagaactgtggtaggaagtgtcctgaggtaagac
ttctatctgactaaactgcatctacacagtgatggaagtaccccaacgga
tgtgatggcatcaccattaggcaaaatcaaaagttagggatcactacttg
attctgaaagtacctagtctgaaggctttccaaataggctgtttgtcact
gtgcctcatttacacagagcaactgcccaggtcctcacatctatgcttaa
actgagatctctacctgcattgacctcagctctttcttacctttttcttc
ctgggcaggtacctggaccctttctgtgtggtagtacatgttgtgtttca
tgtctggatacttcatctctaatataggattacccccctccaactcagtt
tcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_39606181_39607336
seq2: B6Ng01-296A23.b_44_1195

seq1  GAATTCTCACCTGAGGAATACCAAATGGCTGAGAAACACCTGAAAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCAAATGGCTGAGAAACACCTGAAAAATGT  50

seq1  TCAACATCATTAATCATCAGGGATTTCCCCAAATCAAAACAACGTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCATTAATCATCAGGGATTTCCCCAAATCAAAACAACGTTGAGA  100

seq1  TTCCACCTCACAACAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCACAACAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAG  150

seq1  GAAATGCTGGCAAGGATGTGGAGATAGAGGGATACTCTTCCATTATTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTGGCAAGGATGTGGAGATAGAGGGATACTCTTCCATTATTGGT  200

seq1  GGGATTGCAAGCGGGTACAACCACTCTGGAAATCAGTTTGGCAGTTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGCAAGCGGGTACAACCACTCTGGAAATCAGTTTGGCAGTTCCTC  250

seq1  AGGAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCACTACTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCACTACTGGG  300

seq1  CATATACCCAGAAGATGGTCCAACTTGTAATAAGGGCACATGCTCCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACCCAGAAGATGGTCCAACTTGTAATAAGGGCACATGCTCCACTA  350

seq1  TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAAAAAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAAAAAAACAC  400

seq1  AGATGTGCTTCACTATTTTAATATACACTTTGACAAACTTACAAATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCTTCACTATTTTAATATACACTTTGACAAACTTACAAATGCTT  450

seq1  TATTCTGTTTCTGATTTGAAATTTCAAATCCCCCAGGGACAATTTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTTTCTGATTTGAAATTTCAAATCCCCCAGGGACAATTTTTTCC  500

seq1  AAAGCAAAGGACCACTACCTATCCTCATTTCTCTTTTTATATCATTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAGGACCACTACCTATCCTCATTTCTCTTTTTATATCATTGCTA  550

seq1  GATACACTCATTCTATCTACACGTCCATGCTGAAACTTTCTTCTCTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACTCATTCTATCTACACGTCCATGCTGAAACTTTCTTCTCTTGCC  600

seq1  TTCCATGATACTAAATTTGTCTGAGTCTCTTTTGTTATTCTCTACATAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGATACTAAATTTGTCTGAGTCTCTTTTGTTATTCTCTACATAGC  650

seq1  TTTATTTTTATTCCAGAATTCTATGTATATTAGTACAGTAAATAAGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTATTCCAGAATTCTATGTATATTAGTACAGTAAATAAGAATT  700

seq1  ACTAGAAGTGTCAAAGGCTTTGGAAGATAATTTCAATCTCATAGACGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGTGTCAAAGGCTTTGGAAGATAATTTCAATCTCATAGACGCAA  750

seq1  ACTTGAAGGCATAATGGCTTTTGTTTTGTTTTGTTTTGTTTTTAATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGGCATAATGGCTTTTGTTTTGTTTTGTTTTGTTTTTAATCTTT  800

seq1  TTTTCCTACCCAGTCAACCGCACGGCATGTAGAAAAGTTTGGATTTGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTACCCAGTCAACCGCACGGCATGTAGAAAAGTTTGGATTTGATC  850

seq1  CATGCAATTGCCTTTCTGAAAATCTGATTTGATTGCTTACAAGATGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATTGCCTTTCTGAAAATCTGATTTGATTGCTTACAAGATGATGT  900

seq1  TTATTGTTATATTTTCTCTGGGGAACAGGATGGATTTGTCTACCCAAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTATATTTTCTCTGGGGAACAGGATGGATTTGTCTACCCAAGAG  950

seq1  AGAAATAACTGGGCATCTGCAAGTTATTCCATTACAAGGGCAGAGTCGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAACTGGGCATCTGCAAGTTATTCCATTACAAGGGCAGAGTCGGA  1000

seq1  CTAAGACCTTCAATTTTGCACACAATCTCCCCAGCT-CTACCCTATAAAA  1049
      || ||| |||||| |||||||||||||||||||||| |||||||||||||
seq2  CT-AGA-CTTCAA-TTTGCACACAATCTCCCCAGCTCCTACCCTATAAAA  1047

seq1  TCACTCA-CACTTGCTTGTAGCAGGGATTAATTTAAATTTTCATTATAAT  1098
      ||||||| |||||||||||||||  |||  ||||||||||   ||||| |
seq2  TCACTCACCACTTGCTTGTAGCA-AGAT--ATTTAAATTTCATTTATATT  1094

seq1  GTCCAGAACATGATAACCATACAACATAAGTCTT-GGAGATTC-ATGTG-  1145
      |||||||||||||||  ||| ||||||| ||||| |||||||| ||||| 
seq2  GTCCAGAACATGATA--CAT-CAACATAGGTCTTGGGAGATTCTATGTGC  1141

seq1  CATGCCTAGAA  1156
      ||||| |||||
seq2  CATGCTTAGAA  1152


seq1: chr14_39733315_39734416
seq2: B6Ng01-296A23.g_65_1168 (reverse)

seq1  TAGAAACTGAGTTGGA-GGGGGTAATCCTATATTAGAGGATGGAAGTTAT  49
      |||||||||||||||| |||||||||||||||||||| ||| |||||   
seq2  TAGAAACTGAGTTGGAGGGGGGTAATCCTATATTAGA-GAT-GAAGTATC  48

seq1  CAGACAATGAAACACAACAATGTACTACCACACAGAAAGG--TCAGGTAC  97
      ||||| |||||||||||| |||||||||||||||||||||   |||||||
seq2  CAGAC-ATGAAACACAAC-ATGTACTACCACACAGAAAGGGTCCAGGTAC  96

seq1  CTG-CCAGGAAG-AAAAGGTAAG-AAGAGCTGAGGTCAATGCAGGTAGAG  144
      ||| |||||||| |||||||||| ||||||||||||||||||||||||||
seq2  CTGCCCAGGAAGAAAAAGGTAAGAAAGAGCTGAGGTCAATGCAGGTAGAG  146

seq1  ATCTCAGTTTAAGCATAGATGTGAGGACCTGGGCAGTTGCTCTGTGTAAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTTTAAGCATAGATGTGAGGACCTGGGCAGTTGCTCTGTGTAAA  196

seq1  TGAGGCACAGTGACAAACAGCCTATTTGGAAAGCCTTCAGACTAGGTACT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACAGTGACAAACAGCCTATTTGGAAAGCCTTCAGACTAGGTACT  246

seq1  TTCAGAATCAAGTAGTGATCCCTAACTTTTGATTTTGCCTAATGGTGATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATCAAGTAGTGATCCCTAACTTTTGATTTTGCCTAATGGTGATG  296

seq1  CCATCACATCCGTTGGGGTACTTCCATCACTGTGTAGATGCAGTTTAGTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACATCCGTTGGGGTACTTCCATCACTGTGTAGATGCAGTTTAGTC  346

seq1  AGATAGAAGTCTTACCTCAGGACACTTCCTACCACAGTTCTCTTATTCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAAGTCTTACCTCAGGACACTTCCTACCACAGTTCTCTTATTCTA  396

seq1  TATGCATAGGAAGATGTAGAGATGAAGTAGGTGCCAAAATCCTGTAGTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATAGGAAGATGTAGAGATGAAGTAGGTGCCAAAATCCTGTAGTTA  446

seq1  TATCCTGGAACGTTTAGCTCCAGTATCTGTGGGATGTTAAGCCTGGCCCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGAACGTTTAGCTCCAGTATCTGTGGGATGTTAAGCCTGGCCCC  496

seq1  GACTCTCTGGAAGCTGGTAGTAATAGTCTTACTTTCGAAATGTTCATTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCTGGAAGCTGGTAGTAATAGTCTTACTTTCGAAATGTTCATTGT  546

seq1  CTGTTAACACCATGCACTGTACCAAAGCTAGTTTTCTTAGTGTCTTGGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACACCATGCACTGTACCAAAGCTAGTTTTCTTAGTGTCTTGGGA  596

seq1  GTTTCTTTTTGCACTGGCAGTTAATTGATACATGGATCTGCTCCTGATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTTGCACTGGCAGTTAATTGATACATGGATCTGCTCCTGATTT  646

seq1  CTCTCATTATGCATTGAATTTATGTTTCTTATCCTCCCCATATCCAGTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTATGCATTGAATTTATGTTTCTTATCCTCCCCATATCCAGTCA  696

seq1  GGTGGGACAAAGACAGTGAACTTTCTGGTACTTGCAGTTGTCTTGGCTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACAAAGACAGTGAACTTTCTGGTACTTGCAGTTGTCTTGGCTAG  746

seq1  ACCTAGACTTGGAACTGAGAATCAAGTGGCCAGGCCTGTTGACATGCTGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGACTTGGAACTGAGAATCAAGTGGCCAGGCCTGTTGACATGCTGA  796

seq1  TGATTTCAATAGAGATAGGGAATGTTGCCACTGTGATATAAATACCTAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAATAGAGATAGGGAATGTTGCCACTGTGATATAAATACCTAAG  846

seq1  ACACCCCGTGCATGTGATTTCCTTCTCTTTTAATTGGTAGTTTATAGTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCGTGCATGTGATTTCCTTCTCTTTTAATTGGTAGTTTATAGTCT  896

seq1  ACTGCACAATCAGCCTTTTCTACACTGACTCAATTAGTTCCTGCAAATGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACAATCAGCCTTTTCTACACTGACTCAATTAGTTCCTGCAAATGT  946

seq1  GCTGGGTGCCTCTCAGCTCTATAATTATCACTTAGTGTCAAAAATTGCAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGCCTCTCAGCTCTATAATTATCACTTAGTGTCAAAAATTGCAA  996

seq1  AGTGGAAGAAAGAAAACCTGAACCACATGACTTGGAGGTGCATATCACTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGAAAGAAAACCTGAACCACATGACTTGGAGGTGCATATCACTC  1046

seq1  TCAGAGTAGAATATTTCCCAAGCTGGAGTCATGCTATTTTTGCTTCTGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTAGAATATTTCCCAAGCTGGAGTCATGCTATTTTTGCTTCTGCT  1096

seq1  GAGAATTC  1102
      ||||||||
seq2  GAGAATTC  1104


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