BAC Information

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BAC

Clone NameB6Ng01-296D13
Chromosome14 (Build37)
Map Location 62,091,644 - 62,303,585
singlet/doubletdoublet
Overlap gene6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253
Upstream geneEG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865
Downstream geneDleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296D13.bB6Ng01-296D13.g
ACCGA091885GA091886
length1,189221
definitionB6Ng01-296D13.b B6Ng01-296D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,091,644 - 62,092,806)(62,303,365 - 62,303,585)
sequence
gaattctgttgtttgtttgtttgtttgttttcttaagatgggccaggagg
atgtgaggcagacatggagatgtttggtactcctgtatgcccttgaactg
taagtaatgactattgtgataataggtgaattggctgcctttgctctcgg
ggagtcatgggagtgattcggaaggaggcagacctgatgagctgtgaaca
ggtttgtcttgctttttgctgtagtatctccaggacccgccacacagtct
gacacacagcaattttaaaaggtttggagggctgaagagatgattcagca
gttagttgagagcacttggtggtcttatggaggagctaggttctgttcct
attacccacctcaggcagaacattactgcctataactccagatccagggt
gcccagtgtcctcttctgtcctccaagggcactgcacacatatggaccca
catccagacaagcatgcacacccacacatacagagatagatggatgataa
acagatagatatacagctctcaaatcatcagtatttctaacgtttaatgt
ttatatttgagccctcaacacatgtttcagaacccattcagccgtgtttg
agaaccagatatctaaatttccttctcccctttttgtatattgtctcctc
ttgaaataatttctttgattttattaaattttttatgggaccaaatttaa
gaggcttctaagactcaacattaaactggaaactgatctggacataatga
ggcaccttaatcccagcactggggaggctgaagcaagatgatcaggagct
cagtgaggtccccagtgagacagctcccacccccatctcaaatagacaaa
tgacaacaacaaagaaagctgcattgcactagggaggtgatgtcatgcac
taggaaagtgatgtcattcactagggagatgatgtcatgtacaaggaaag
gtatgtcatacactagaaagggtgatgtcatgcactaggagagtgatgtc
ataccactaggacggtgatgtcatgccactaggaaggtaatatccacctt
ggttttccaatcgtgaccttcttttcttgtcctcaatttttccaatttgg
tggagatatgccaaagaaccaaaccagaccaaccataccacctgggccta
attcgtaccaatgccacacacacactttcccctcagatt
cgtgggcctcgagtcccaagaggcctttgcgcaccctcgcctgcgttcct
gcctgagaccctgctaagacatctgccactagaagccaaactcgttcgtg
tcacactcctttacttctgcagggtctcagtcttcaacttcgagacccag
accaaactctccatgcaagattgatgtactatccatatgcacttttccgg
agatgggagtttggggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_62091644_62092806
seq2: B6Ng01-296D13.b_48_1236

seq1  GAATTCTGTTGTTTGTTTGTTTGTTTGTTTTCTTAAGATGGGCCAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGTTTGTTTGTTTGTTTGTTTTCTTAAGATGGGCCAGGAGG  50

seq1  ATGTGAGGCAGACATGGAGATGTTTGGTACTCCTGTATGCCCTTGAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGCAGACATGGAGATGTTTGGTACTCCTGTATGCCCTTGAACTG  100

seq1  TAAGTAATGACTATTGTGATAATAGGTGAATTGGCTGCCTTTGCTCTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATGACTATTGTGATAATAGGTGAATTGGCTGCCTTTGCTCTCGG  150

seq1  GGAGTCATGGGAGTGATTCGGAAGGAGGCAGACCTGATGAGCTGTGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCATGGGAGTGATTCGGAAGGAGGCAGACCTGATGAGCTGTGAACA  200

seq1  GGTTTGTCTTGCTTTTTGCTGTAGTATCTCCAGGACCCGCCACACAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTCTTGCTTTTTGCTGTAGTATCTCCAGGACCCGCCACACAGTCT  250

seq1  GACACACAGCAATTTTAAAAGGTTTGGAGGGCTGAAGAGATGATTCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAGCAATTTTAAAAGGTTTGGAGGGCTGAAGAGATGATTCAGCA  300

seq1  GTTAGTTGAGAGCACTTGGTGGTCTTATGGAGGAGCTAGGTTCTGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTGAGAGCACTTGGTGGTCTTATGGAGGAGCTAGGTTCTGTTCCT  350

seq1  ATTACCCACCTCAGGCAGAACATTACTGCCTATAACTCCAGATCCAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCACCTCAGGCAGAACATTACTGCCTATAACTCCAGATCCAGGGT  400

seq1  GCCCAGTGTCCTCTTCTGTCCTCCAAGGGCACTGCACACATATGGACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGTCCTCTTCTGTCCTCCAAGGGCACTGCACACATATGGACCCA  450

seq1  CATCCAGACAAGCATGCACACCCACACATACAGAGATAGATGGATGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGACAAGCATGCACACCCACACATACAGAGATAGATGGATGATAA  500

seq1  ACAGATAGATATACAGCTCTCAAATCATCAGTATTTCTAACGTTTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGATATACAGCTCTCAAATCATCAGTATTTCTAACGTTTAATGT  550

seq1  TTATATTTGAGCCCTCAACACATGTTTCAGAACCCATTCAGCCGTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGAGCCCTCAACACATGTTTCAGAACCCATTCAGCCGTGTTTG  600

seq1  AGAACCAGATATCTAAATTTCCTTCTCCCCTTTTTGTATATTGTCTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGATATCTAAATTTCCTTCTCCCCTTTTTGTATATTGTCTCCTC  650

seq1  TTGAAATAATTTCTTTGATTTTATTAAATTTTTTATGGGACCAAATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAATTTCTTTGATTTTATTAAATTTTTTATGGGACCAAATTTAA  700

seq1  GAGGCTTCTAAGACTCAACATTAAACTGGAAACTGATCTGGACATAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCTAAGACTCAACATTAAACTGGAAACTGATCTGGACATAATGA  750

seq1  GGCACCTTAATCCCAGCACTGGGGAGGCTGAAGCAAGATGATCAGGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTTAATCCCAGCACTGGGGAGGCTGAAGCAAGATGATCAGGAGCT  800

seq1  CAGTGAGGTCCCCAGTGAGACAGCTCCCACCCCCATCTCAAATAGACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGTCCCCAGTGAGACAGCTCCCACCCCCATCTCAAATAGACAAA  850

seq1  TGACAACAACAAAGAAAGCTGCATTGCACTAGGGAGGTGATGTCATGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAACAAAGAAAGCTGCATTGCACTAGGGAGGTGATGTCATGCAC  900

seq1  TAGGAAGGTGATGTCATTCACTAGGGAGATGATGTCATGTACAAGGAAGG  950
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGGAAAGTGATGTCATTCACTAGGGAGATGATGTCATGTACAAGGAAAG  950

seq1  TAATGTCATACACTAG-AAGGGTGATGTCATGCACTAGGAGAGTGATGTC  999
        |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTATGTCATACACTAGAAAGGGTGATGTCATGCACTAGGAGAGTGATGTC  1000

seq1  ATA-CACTAGGACGGTGATGTCATG-CACTAGGAAAGTAATAT-CAC--T  1044
      ||| ||||||||||||||||||||| ||||||||| ||||||| |||  |
seq2  ATACCACTAGGACGGTGATGTCATGCCACTAGGAAGGTAATATCCACCTT  1050

seq1  TGTTTTCCAATCGTGAC--TC-TTTCTTGT-CTCAA-TTTTCCAATTT-G  1088
       ||||||||||||||||  || |||||||| ||||| ||||||||||| |
seq2  GGTTTTCCAATCGTGACCTTCTTTTCTTGTCCTCAATTTTTCCAATTTGG  1100

seq1  TGAAAATATGC--AAGAA-CAAAACAGAC--AACATAACA-CTGG--CTA  1130
      || | ||||||  ||||| |||| |||||  | |||| || ||||  |||
seq2  TGGAGATATGCCAAAGAACCAAACCAGACCAACCATACCACCTGGGCCTA  1150

seq1  --TCGTAACCAATG---CACACACACTT--CCCTCAGATT  1163
        |||| |||||||   |||||||||||  ||||||||||
seq2  ATTCGT-ACCAATGCCACACACACACTTTCCCCTCAGATT  1189

seq1: chr14_62303365_62303585
seq2: B6Ng01-296D13.g_75_295 (reverse)

seq1  CCTCCCCCCAAACTCCCATCTCCGGAAAAGTGCATATGGATAGTACATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCCAAACTCCCATCTCCGGAAAAGTGCATATGGATAGTACATCA  50

seq1  ATCTTGCATGGAGAGTTTGGTCTGGGTCTCGAAGTTGAAGACTGAGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCATGGAGAGTTTGGTCTGGGTCTCGAAGTTGAAGACTGAGACCC  100

seq1  TGCAGAAGTAAAGGAGTGTGACACGAACGAGTTTGGCTTCTAGTGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGTAAAGGAGTGTGACACGAACGAGTTTGGCTTCTAGTGGCAGA  150

seq1  TGTCTTAGCAGGGTCTCAGGCAGGAACGCAGGCGAGGGTGCGCAAAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGCAGGGTCTCAGGCAGGAACGCAGGCGAGGGTGCGCAAAGGCC  200

seq1  TCTTGGGACTCGAGGCCCACG  221
      |||||||||||||||||||||
seq2  TCTTGGGACTCGAGGCCCACG  221