BAC Information

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BAC

Clone NameB6Ng01-296L20
Chromosome14 (Build37)
Map Location 58,075,161 - 58,205,747
singlet/doubletdoublet
Overlap geneIft88, Il17d, N6amt2, Xpo4
Upstream geneRnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096
Downstream geneLats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296L20.bB6Ng01-296L20.g
ACCGA092271GA092272
length1,1461,035
definitionB6Ng01-296L20.b B6Ng01-296L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,075,161 - 58,076,304)(58,204,725 - 58,205,747)
sequence
gaattctctgagtagctgggaatgaccttgcatgatcttccttcctccat
ctcctcagattctgatcacatgtgtgtaccactaagctagccagctagct
tgcctgcccccttccctcttccttttaagataggttctcattccgtggtt
atattaatagggttctctaaaggaacagaagtgatagaatgaagaaagaa
tatagagagatggtgagatggctcagcagttaagagcactgactgctctt
ccagaagtccagagttcaattctaagcaaccacttggatgcagtctatta
ctagttccttgggatcctgggccttcttctggcatacaaacatacatgca
gacaaaatacccatatataaaaagatacatatttaaataagtctttaata
taattcataatatatattactaatatatatgattgatttgaggtacccag
gttgtggtctgtgtagacaacagtggctgtcttgtgactgaaaggctaga
tatctcatggtcccagtctggcactagatcctgaggatttcagcagagct
aatgatcttcagtatccattggcatctcaaaattcattttaatacaggag
gaacaagataaatgaatgtgccagagacagtgagaacaatcagtcaaaaa
gcaaaaggtcccttctcccatctcaattaatgagagctgccactaaaaat
gtgttctcaaataatccagtcagggaaatctctcacagtagtgcctagta
gcctagactttagttcatttcagttagtcacattgacaaccaagattagc
cattacagtggtccagtctggaactcatttgatccttctacttcagcctc
ccaagtgctaggatcacaggcataggggacagtatacccaactcccatgt
gtcatctttctcttaacttttcagatcattcaagccagacatgcaaccta
agacccttgcttcaagccaagtgaatacttttgcttgaatatgtttcagt
tgtgaaatgataatcatccatttaaaggaaagaatagtttgctttaagaa
atgttgattcagtggttggagcacgctttaattcccagccctttaagtgc
caagagttcaggcaagagttctggagttccacagagtgagttccag
gaattctttctactatgtatttttttcattaacagctactgaaagattcc
ctttactgtaatgtattttacatttctgcaggtcttgatgttttctatat
tttgtatacatcttgaaaattgttatactggttatgagcttgttagtttt
ttgttttatgagacagtattaaacaaaaatatttaatatttctttttcag
tttccaaccctttgtaatcaatattacaaactgatcacatttatttgtga
gatttttcctgaaaagataccgcagcttcctgaggatctgtttaagagtc
tgatgtactccctagaactagggatgacatcgtatcctttaaatgaacat
tgttattaggggagggaggtttttgtttttaaaatgattgtttttctttt
atagctcaatttgtaactgctttaattcttttcctttttttttttttttt
ttctcttctttttttaaattttttttatttttgagtcaggctttctctgt
gtagcttggttgtcctgaaattcactctgtaaattagactggtcctaagc
ctacctggtgctgtttcttttcatacatctagtacctggccctctggtca
ttccttcgttaggtcgtgtgatgcattgcagttggttctctattcttaac
ttgctgacattataatgtcatcatttgtataaatctcatctgcagaaaca
agctagtttattactggacctgcaaactctcagaggccattcttgtgtgg
aaatacttcttttctaacttcagtggagacacttgcaatctggcctaccc
cctatcatctgtatttcctagctacaaaaagtcctatgtataatatagct
gtcatttttttgttttttttttggtatttctttaaaagcagggattatgt
gatatagttcgatctttgaccattggtgttcacaatgaggtccgaaagtt
tgccaccttttgtctcgaggccttggcccctttagctgaaacaatggtgc
taaagcacaaaaaaacggatctccccttttttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_58075161_58076304
seq2: B6Ng01-296L20.b_50_1195

seq1  GAATTCTCTGAGTAGCTGGGAATGACCTTGCATGATCTTCCTTCCTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGTAGCTGGGAATGACCTTGCATGATCTTCCTTCCTCCAT  50

seq1  CTCCTCAGATTCTGATCACATGTGTGTACCACTAAGCTAGCCAGCTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGATTCTGATCACATGTGTGTACCACTAAGCTAGCCAGCTAGCT  100

seq1  TGCCTGCCCCCTTCCCTCTTCCTTTTAAGATAGGTTCTCATTCCGTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCCCCTTCCCTCTTCCTTTTAAGATAGGTTCTCATTCCGTGGTT  150

seq1  ATATTAATAGGGTTCTCTAAAGGAACAGAAGTGATAGAATGAAGAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATAGGGTTCTCTAAAGGAACAGAAGTGATAGAATGAAGAAAGAA  200

seq1  TATAGAGAGATGGTGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGAGATGGTGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTT  250

seq1  CCAGAAGTCCAGAGTTCAATTCTAAGCAACCACTTGGATGCAGTCTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTCCAGAGTTCAATTCTAAGCAACCACTTGGATGCAGTCTATTA  300

seq1  CTAGTTCCTTGGGATCCTGGGCCTTCTTCTGGCATACAAACATACATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCCTTGGGATCCTGGGCCTTCTTCTGGCATACAAACATACATGCA  350

seq1  GACAAAATACCCATATATAAAAAGATACATATTTAAATAAGTCTTTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATACCCATATATAAAAAGATACATATTTAAATAAGTCTTTAATA  400

seq1  TAATTCATAATATATATTACTAATATATATGATTGATTTGAGGTACCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATAATATATATTACTAATATATATGATTGATTTGAGGTACCCAG  450

seq1  GTTGTGGTCTGTGTAGACAACAGTGGCTGTCTTGTGACTGAAAGGCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTCTGTGTAGACAACAGTGGCTGTCTTGTGACTGAAAGGCTAGA  500

seq1  TATCTCATGGTCCCAGTCTGGCACTAGATCCTGAGGATTTCAGCAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATGGTCCCAGTCTGGCACTAGATCCTGAGGATTTCAGCAGAGCT  550

seq1  AATGATCTTCAGTATCCATTGGCATCTCAAAATTCATTTTAATACAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTTCAGTATCCATTGGCATCTCAAAATTCATTTTAATACAGGAG  600

seq1  GAACAAGATAAATGAATGTGCCAGAGACAGTGAGAACAATCAGTCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGATAAATGAATGTGCCAGAGACAGTGAGAACAATCAGTCAAAAA  650

seq1  GCAAAAGGTCCCTTCTCCCATCTCAATTAATGAGAGCTGCCACTAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGTCCCTTCTCCCATCTCAATTAATGAGAGCTGCCACTAAAAAT  700

seq1  GTGTTCTCAAATAATCCAGTCAGGGAAATCTCTCACAGTAGTGCCTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCAAATAATCCAGTCAGGGAAATCTCTCACAGTAGTGCCTAGTA  750

seq1  GCCTAGACTTTAGTTCATTTCAGGTTAGTCACATTGACAACCAAGATTAG  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCTAGACTTTAGTTCATTTCA-GTTAGTCACATTGACAACCAAGATTAG  799

seq1  CCATTACAGTGGTCCAGTCTGGAACTCATTTGATCCTTCTACTTCAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAGTGGTCCAGTCTGGAACTCATTTGATCCTTCTACTTCAGCCT  849

seq1  CCCAAGTGCTAGGATCACAGGCATAGGGGACAGTATACCCAACTCCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTAGGATCACAGGCATAGGGGACAGTATACCCAACTCCCATG  899

seq1  TGTCATCTTTCTCTTAACTTTTCAGATCATTCAAGCCAGACATGCAACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTTTCTCTTAACTTTTCAGATCATTCAAGCCAGACATGCAACCT  949

seq1  AAGGACCCTTGCTTCAAGCCAAGGTGAATACTTTTGCTTGAATATGTTTC  1000
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AA-GACCCTTGCTTCAAGCCAA-GTGAATACTTTTGCTTGAATATGTTTC  997

seq1  AGTTGTGAAATGATAATCATCCATTTAAAGGAAAGATAGGTTTGC-TTAA  1049
      ||||||||||||||||||||||||||||||||||||   |||||| ||||
seq2  AGTTGTGAAATGATAATCATCCATTTAAAGGAAAGAATAGTTTGCTTTAA  1047

seq1  GAAATGTTGATTTCCAGTGG-TGGAGCACGCCTTTAATCCCAGCCC-TTA  1097
      ||||||||||||  |||||| |||||||||| || | ||||||||| |||
seq2  GAAATGTTGATT--CAGTGGTTGGAGCACGCTTTAATTCCCAGCCCTTTA  1095

seq1  GGTGGC-AGAG-TCAGGC-AGAGTTCT-GAGTTCCACAGAGTGAGTTCCA  1143
       ||| | |||| |||||| |||||||| ||||||||||||||||||||||
seq2  AGTGCCAAGAGTTCAGGCAAGAGTTCTGGAGTTCCACAGAGTGAGTTCCA  1145

seq1  G  1144
      |
seq2  G  1146

seq1: chr14_58204725_58205747
seq2: B6Ng01-296L20.g_69_1103 (reverse)

seq1  TAGAAAAAGTGGTGAATCCG-TTTCTTGTGCTTTAGCA-CATTG-TTCAG  47
      ||||||||  ||   ||||| ||| ||||||||||||| ||||| |||||
seq2  TAGAAAAAAGGGGAGATCCGTTTTTTTGTGCTTTAGCACCATTGTTTCAG  50

seq1  CTAATGGTGTCAAGGCCTCGAGAC-AAAGCTGGCATAC-TTCTGAACTCA  95
      |||| || | |||||||||||||| |||| ||||| || ||| || ||||
seq2  CTAAAGGGGCCAAGGCCTCGAGACAAAAGGTGGCAAACTTTCGGACCTCA  100

seq1  TTCTGAACA-CAATGGTCAAAGATCGAACTATATCACAT-ATACCTGACT  143
      || |||||| ||||||||||||||||||||||||||||| || ||||  |
seq2  TTGTGAACACCAATGGTCAAAGATCGAACTATATCACATAATCCCTGCTT  150

seq1  TTAAAG-AATACCAAAAAAAAAAAAAAAAAAAATGACAGCTATATTATAC  192
      |||||| ||||||  |||||||||| ||||||||||||||||||||||||
seq2  TTAAAGAAATACC--AAAAAAAAAACAAAAAAATGACAGCTATATTATAC  198

seq1  ATAGGACTTTTTGTAGCTAGG-AATACAGATGATAGGGGGTAGGCCAGAT  241
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAGGACTTTTTGTAGCTAGGAAATACAGATGATAGGGGGTAGGCCAGAT  248

seq1  TGC-AGTGTCTCCACTG-AGTTAGAAAAGAAGTATTTCCACACAAG-ATG  288
      ||| ||||||||||||| |||||||||||||||||||||||||||| |||
seq2  TGCAAGTGTCTCCACTGAAGTTAGAAAAGAAGTATTTCCACACAAGAATG  298

seq1  GCCTCTGAGAGTTTGCAGGTCCAGTAAT-AACTAGCTTGTTTCTGCAGAT  337
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCTCTGAGAGTTTGCAGGTCCAGTAATAAACTAGCTTGTTTCTGCAGAT  348

seq1  GAGA-TTATACAAATGATGACATTATAATGTCAGCAAGTTAAGAATAGAG  386
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTATACAAATGATGACATTATAATGTCAGCAAGTTAAGAATAGAG  398

seq1  AACCAACTGCAATGCATCACACGACCTAACGAAGGAATGACCAGAGGGCC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTGCAATGCATCACACGACCTAACGAAGGAATGACCAGAGGGCC  448

seq1  AGGTACTAGATGTATGAAAAGAAACAGCACCAGGTAGGCTTAGGACCAGT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTAGATGTATGAAAAGAAACAGCACCAGGTAGGCTTAGGACCAGT  498

seq1  CTAATTTACAGAGTGAATTTCAGGACAACCAAGCTACACAGAGAAAGCCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTACAGAGTGAATTTCAGGACAACCAAGCTACACAGAGAAAGCCT  548

seq1  GACTCAAAAATAAAAAAAATTTAAAAAAAGAAGAGAAAAAAAAAAAAAAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAAATAAAAAAAATTTAAAAAAAGAAGAGAAAAAAAAAAAAAAA  598

seq1  AAAGGAAAAGAATTAAAGCAGTTACAAATTGAGCTATAAAAGAAAAACAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAGAATTAAAGCAGTTACAAATTGAGCTATAAAAGAAAAACAA  648

seq1  TCATTTTAAAAACAAAAACCTCCCTCCCCTAATAACAATGTTCATTTAAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAAAAACAAAAACCTCCCTCCCCTAATAACAATGTTCATTTAAA  698

seq1  GGATACGATGTCATCCCTAGTTCTAGGGAGTACATCAGACTCTTAAACAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACGATGTCATCCCTAGTTCTAGGGAGTACATCAGACTCTTAAACAG  748

seq1  ATCCTCAGGAAGCTGCGGTATCTTTTCAGGAAAAATCTCACAAATAAATG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGGAAGCTGCGGTATCTTTTCAGGAAAAATCTCACAAATAAATG  798

seq1  TGATCAGTTTGTAATATTGATTACAAAGGGTTGGAAACTGAAAAAGAAAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGTTTGTAATATTGATTACAAAGGGTTGGAAACTGAAAAAGAAAT  848

seq1  ATTAAATATTTTTGTTTAATACTGTCTCATAAAACAAAAAACTAACAAGC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATTTTTGTTTAATACTGTCTCATAAAACAAAAAACTAACAAGC  898

seq1  TCATAACCAGTATAACAATTTTCAAGATGTATACAAAATATAGAAAACAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACCAGTATAACAATTTTCAAGATGTATACAAAATATAGAAAACAT  948

seq1  CAAGACCTGCAGAAATGTAAAATACATTACAGTAAAGGGAATCTTTCAGT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCTGCAGAAATGTAAAATACATTACAGTAAAGGGAATCTTTCAGT  998

seq1  AGCTGTTAATGAAAAAAATACATAGTAGAAAGAATTC  1023
      |||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTAATGAAAAAAATACATAGTAGAAAGAATTC  1035