BAC Information

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BAC

Clone NameB6Ng01-297D21
Chromosome14 (Build37)
Map Location 56,750,700 - 56,929,474
singlet/doubletdoublet
Overlap geneGzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082
Upstream geneLOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme
Downstream geneAtp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297D21.bB6Ng01-297D21.g
ACCGA092647GA092648
length1,1081,134
definitionB6Ng01-297D21.b B6Ng01-297D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,750,700 - 56,751,815)(56,928,361 - 56,929,474)
sequence
gaattctgcaccagggccatattggaacagtgtgctgtccttgctggaat
agctggcgacctgcagagtggagaggccaactaaaactagcctgcaaagc
tggtggagtgtgcagtgcaggttcttgtcagcctgggtctctttcttctg
cagggttgagggtggacttaataaataatgctgagattcttgagctgggg
tcctcacccctttgttggcttgtcattaaggcttccttgtcccttggcta
aagtcaagatacacatttctgatctttgcattctgtgccacatctctttc
taaggatgatccagtttccaggtaatgaaaaaacgaaaaacaaaaaacca
aaaccaaaccaaaacaacaacagcagcaacaaaaacaactgggagaagct
agtagctactaaatttctgagaacacctcccttactcagaccttgttgag
aatcttgccagtgtcagatttccaagtctgggtttggtacccgaggttca
gaaacatcctgggtccagtgccaggacaattcctgactactgctgggcag
aaagtcaccagaggtgtcatgggacggcatcactggcacaggggtgttca
ctcacctgctccagctctgagaggcagaagtagggtcaggagaatcagga
ttggtggcatcttcccaggaaggctgctcaggatggaggagggcagagca
gacaaagcccttggaaggcgaggaaggagatgtgggctcaggggcctcac
aggcattttaaacctatgcacctctgcttctggttgacatcacattactt
aaggaaatattctggtttgggtaaaaatgacactatcaccacactgacat
cctatgagctaagctggaataaaggtcaagaatttagagggttggaagct
gtggttgaagaggcttgagaccccaggaagtccacagtgaacaaacggac
acaagtgtgtcattcttatggcttacacatttttttttttcaatctggta
tatctctttggtttctttctttcttcttttttttttttgactccttcagt
ttcaaagacaataagacaccagttattctacagcagttatagcacaccta
caatacac
gaattcagagcaaggacctcgttgtctcccttcactaagccatggctgag
tcctgagcccagcaggcctggccggtgaggatgttacttggcttagaaga
aagggaggcgatgaggtcttggatgacgactccttgatcctttgggtgtg
gaaacatggatggtgatttgtctaagtctcttctccgggagctgtttata
agaatagaaacgttgaaactgaaagcacagtcaaattctgagtcactgta
gccgctaatctagagacttgggacttggggaggaggacattgctacaaag
cgggcagggcggggcaggtcctgattccatgatgatctctgaagtttctc
aagacattcttttcctggtctggcttcttcactttcaggaaatcctttaa
aactgattttactaagaaggtgtgagacttactgagggcttagaattttg
ctctaaatctttgtgtctttgtgcttcggtctgaaggaacctctttctcc
tagtctcacccatcatgctgggcttgagatccaattcactcctggttcct
caggtctcactccatggtaggtttattattattattgttgttgttattat
tattattattttatttttactagacaggatttctctgtgtagctctgact
gtcttggtacttgctctgtacaccagacaggctggccttgaactcacaga
gatccacccacctctgcctcccaagtgctgggatataaatgtgtgctacc
atgtccagcagttaatttagttttgaatgcctggagattgactttatggc
ccatttcacatctgccccatccttttgcacagtttttcatcatcctagtg
aatttctggcctaaactgtggccaggttgcttgtggcatgtctgtgccca
tcatactctaggctctgcctagggcaggtaatgaaaggaggccctgccca
tgaaggaattcctcaaagagcacagaagataccatggatgggcgttccat
gttggccggtcaggtcactctgcctgttccacaggaatactcctgacatt
tggagggccctcagtaatggcctcagagagtccagtcctgggaatccaat
ctaatctctttgccatccaggagttacaccatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56750700_56751815
seq2: B6Ng01-297D21.b_49_1156

seq1  GAATTCTGCACCAGGGCCATATTGGAACAGTGTGCTGTCCTTGCTGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACCAGGGCCATATTGGAACAGTGTGCTGTCCTTGCTGGAAT  50

seq1  AGCTGGCGACCTGCAGAGTGGAGAGGCCAACTAAAACTAGCCTGCAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCGACCTGCAGAGTGGAGAGGCCAACTAAAACTAGCCTGCAAAGC  100

seq1  TGGTGGAGTGTGCAGTGCAGGTTCTTGTCAGCCTGGGTCTCTTTCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGTGTGCAGTGCAGGTTCTTGTCAGCCTGGGTCTCTTTCTTCTG  150

seq1  CAGGGTTGAGGGTGGACTTAATAAATAATGCTGAGATTCTTGAGCTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGAGGGTGGACTTAATAAATAATGCTGAGATTCTTGAGCTGGGG  200

seq1  TCCTCACCCCTTTGTTGGCTTGTCATTAAGGCTTCCTTGTCCCTTGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCCCTTTGTTGGCTTGTCATTAAGGCTTCCTTGTCCCTTGGCTA  250

seq1  AAGTCAAGATACACATTTCTGATCTTTGCATTCTGTGCCACATCTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAGATACACATTTCTGATCTTTGCATTCTGTGCCACATCTCTTTC  300

seq1  TAAGGATGATCCAGTTTCCAGGTAATGAAAAAACGAAAAACAAAAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGATCCAGTTTCCAGGTAATGAAAAAACGAAAAACAAAAAACCA  350

seq1  AAACCAAACCAAAACAACAACAGCAGCAACAAAAACAACTGGGAGAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCAAAACAACAACAGCAGCAACAAAAACAACTGGGAGAAGCT  400

seq1  AGTAGCTACTAAATTTCTGAGAACACCTCCCTTACTCAGACCTTGTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTACTAAATTTCTGAGAACACCTCCCTTACTCAGACCTTGTTGAG  450

seq1  AATCTTGCCAGTGTCAGATTTCCAAGTCTGGGTTTGGTACCCGAGGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCCAGTGTCAGATTTCCAAGTCTGGGTTTGGTACCCGAGGTTCA  500

seq1  GAAACATCCTGGGTCCAGTGCCAGGACAATTCCTGACTACTGCTGGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCCTGGGTCCAGTGCCAGGACAATTCCTGACTACTGCTGGGCAG  550

seq1  AAAGTCACCAGAGGTGTCATGGGACGGCATCACTGGCACAGGGGTGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACCAGAGGTGTCATGGGACGGCATCACTGGCACAGGGGTGTTCA  600

seq1  CTCACCTGCTCCAGCTCTGAGAGGCAGAAGTAGGGTCAGGAGAATCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGCTCCAGCTCTGAGAGGCAGAAGTAGGGTCAGGAGAATCAGGA  650

seq1  TTGGTGGCATCTTCCCAGGAAGGCTGCTCAGGATGGAGGAGGGCAGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCATCTTCCCAGGAAGGCTGCTCAGGATGGAGGAGGGCAGAGCA  700

seq1  GACAAAGCCCTTGGAAGGCGAGGAAGGAGATGTGGGCTCAGGGGCCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGCCCTTGGAAGGCGAGGAAGGAGATGTGGGCTCAGGGGCCTCAC  750

seq1  AGGCATTTTAAACCTATGCACCTCTGCTTCTGGTTGACATCACATTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTTAAACCTATGCACCTCTGCTTCTGGTTGACATCACATTACTT  800

seq1  AAGGAAATATTCTGGTTTGGGTAAAAATGACACTATCACCACACTGACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATATTCTGGTTTGGGTAAAAATGACACTATCACCACACTGACAT  850

seq1  CCTATGAGCTAAGCTGGAATAAAGGTCAAGAATTTAGAGGGTTGGAAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAGCTAAGCTGGAATAAAGGTCAAGAATTTAGAGGGTTGGAAGCT  900

seq1  GTGGTTGAAGAGGCTTGAGACCCCAGGAAGTCCACAGTGAACAAACGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGAAGAGGCTTGAGACCCCAGGAAGTCCACAGTGAACAAACGGAC  950

seq1  ACAAGTGTGTCATTCTTTATGGCTTACACA-TTTTTTTTTTCAATCTGGT  999
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  ACAAGTGTGTCATTC-TTATGGCTTACACATTTTTTTTTTTCAATCTGGT  999

seq1  AATATCTCTTTGGGTTTCTTTCTTTCTTTCTTTTTTTTTTTTGACTCCTT  1049
       |||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  -ATATCTCTTT-GGTTTCTTTCTTTC-TTCTTTTTTTTTTTTGACTCCTT  1046

seq1  CAGTTTTCAAAAGACAATACAGACAACCAAATTATTCTAACAGCAGTTAT  1099
      ||||||   |||||||||| |||||  | | ||||||| |||||||||||
seq2  CAGTTT--CAAAGACAATA-AGACA--CCAGTTATTCT-ACAGCAGTTAT  1090

seq1  AGCACA-CTACAATACAC  1116
      |||||| |||||||||||
seq2  AGCACACCTACAATACAC  1108

seq1: chr14_56928361_56929474
seq2: B6Ng01-297D21.g_67_1200 (reverse)

seq1  AGATGG----ACTCTTGGATGGCAAAGAGA-TAGATGGTAT--CCAAGAC  43
      ||||||    |||| ||||||||||||||| ||||| | ||  ||| |||
seq2  AGATGGTGTAACTCCTGGATGGCAAAGAGATTAGATTGGATTCCCAGGAC  50

seq1  TGGACCTCCTGA-GCCA-TACTGAGGG-CCTCC-AATGTCA-GAGT-CTC  87
      |||||   |||| |||| ||||||||| ||||| ||||||| ||||  ||
seq2  TGGACTCTCTGAGGCCATTACTGAGGGCCCTCCAAATGTCAGGAGTATTC  100

seq1  CTGTGG-ACAGGCAGAGTGACCTGACCG--CCACATGGAACG-CCATCCT  133
      |||||| |||||||||||||||||||||  | |||||||||| |||||| 
seq2  CTGTGGAACAGGCAGAGTGACCTGACCGGCCAACATGGAACGCCCATCCA  150

seq1  TGGTATCTTCTGTGCTCTTTGAGAACTTCCCTCATGGGCAGGGCCTCC-T  182
      ||||||||||||||||||||||| | |||| ||||||||||||||||| |
seq2  TGGTATCTTCTGTGCTCTTTGAGGAATTCCTTCATGGGCAGGGCCTCCTT  200

seq1  TCATTACCCTGCCCTAGGCAGAGCCTAGAGTATGAT-GGCACAGACATGC  231
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  TCATTA-CCTGCCCTAGGCAGAGCCTAGAGTATGATGGGCACAGACATGC  249

seq1  CACAAGCAACCTGCCCACAGTTTAGGCCAGAAATTCACTAGGATGATGAA  281
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACAAGCAACCTGGCCACAGTTTAGGCCAGAAATTCACTAGGATGATGAA  299

seq1  AAACTGTGC-AAAGGATGGGGCAGATGTGAAATGGGCCATAAAGTCAATC  330
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGCAAAAGGATGGGGCAGATGTGAAATGGGCCATAAAGTCAATC  349

seq1  TCCA-GCATTCAAAACTAAATTAACTGCTGGACATGGTAGCACACATTTA  379
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCATTCAAAACTAAATTAACTGCTGGACATGGTAGCACACATTTA  399

seq1  TATCCCAGCACTTGGGAGGCAGAGGTGGGTGGATCTCTGTGAGTTCAAGG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGCACTTGGGAGGCAGAGGTGGGTGGATCTCTGTGAGTTCAAGG  449

seq1  CCAGCCTGTCTGGTGTACAGAGCAAGTACCAAGACAGTCAGAGCTACACA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGTCTGGTGTACAGAGCAAGTACCAAGACAGTCAGAGCTACACA  499

seq1  GAGAAATCCTGTCTAGTAAAAATAAAATAATAATAATAATAACAACAACA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCCTGTCTAGTAAAAATAAAATAATAATAATAATAACAACAACA  549

seq1  ATAATAATAATAAACCTACCATGGAGTGAGACCTGAGGAACCAGGAGTGA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAAACCTACCATGGAGTGAGACCTGAGGAACCAGGAGTGA  599

seq1  ATTGGATCTCAAGCCCAGCATGATGGGTGAGACTAGGAGAAAGAGGTTCC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATCTCAAGCCCAGCATGATGGGTGAGACTAGGAGAAAGAGGTTCC  649

seq1  TTCAGACCGAAGCACAAAGACACAAAGATTTAGAGCAAAATTCTAAGCCC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCGAAGCACAAAGACACAAAGATTTAGAGCAAAATTCTAAGCCC  699

seq1  TCAGTAAGTCTCACACCTTCTTAGTAAAATCAGTTTTAAAGGATTTCCTG  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGTCTCACACCTTCTTAGTAAAATCAGTTTTAAAGGATTTCCTG  749

seq1  AAAGTGAAGAAGCCAGACCAGGAAAAGAATGTCTTGAGAAACTTCAGAGA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAGAAGCCAGACCAGGAAAAGAATGTCTTGAGAAACTTCAGAGA  799

seq1  TCATCATGGAATCAGGACCTGCCCCGCCCTGCCCGCTTTGTAGCAATGTC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGGAATCAGGACCTGCCCCGCCCTGCCCGCTTTGTAGCAATGTC  849

seq1  CTCCTCCCCAAGTCCCAAGTCTCTAGATTAGCGGCTACAGTGACTCAGAA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCAAGTCCCAAGTCTCTAGATTAGCGGCTACAGTGACTCAGAA  899

seq1  TTTGACTGTGCTTTCAGTTTCAACGTTTCTATTCTTATAAACAGCTCCCG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGTGCTTTCAGTTTCAACGTTTCTATTCTTATAAACAGCTCCCG  949

seq1  GAGAAGAGACTTAGACAAATCACCATCCATGTTTCCACACCCAAAGGATC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGACTTAGACAAATCACCATCCATGTTTCCACACCCAAAGGATC  999

seq1  AAGGAGTCGTCATCCAAGACCTCATCGCCTCCCTTTCTTCTAAGCCAAGT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTCGTCATCCAAGACCTCATCGCCTCCCTTTCTTCTAAGCCAAGT  1049

seq1  AACATCCTCACCGGCCAGGCCTGCTGGGCTCAGGACTCAGCCATGGCTTA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTCACCGGCCAGGCCTGCTGGGCTCAGGACTCAGCCATGGCTTA  1099

seq1  GTGAAGGGAGACAACGAGGTCCTTGCTCTGAATTC  1114
      |||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGAGACAACGAGGTCCTTGCTCTGAATTC  1134