BAC Information

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BAC

Clone NameB6Ng01-297I19
Chromosome14 (Build37)
Map Location 56,003,397 - 56,003,838
singlet/doubletsinglet
Overlap geneLOC100042729
Upstream geneSlc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176
Downstream geneEG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297I19.bB6Ng01-297I19.g
ACCGA092880GA092881
length1,320436
definitionB6Ng01-297I19.b B6Ng01-297I19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatagccactgtggctcaagatcttcaaaccaagatccagataag
gatctccaagcctccagataagggtcactggtgagccttccaattccgga
ttgtagttcattccaaatattgtcaagttgacaaccaggaatagccacta
caatatgcaaatattctttgtaatgagtcattggtttggttcaaggtttc
tggtttctgatacaccatcagtgtggatccatgctcttggatgtcctgct
attgcccagagcccagtggtcctgcagctccggatctgcagggttagctt
cttcactagctccagcagcttgtggtaggagtgaaggttggaatggatcg
acccaaagcactggatcttggcctagatggtagctgagttggtcagccca
agcctcaggcagatggcagggcctgcctgtggcacatgcttttaatccta
gcattcatgaggcagaggcagatggatggtcactgtgagttctaggccaa
catgatctacatagtgagttctcaaacaaacaaacaaacaaacaaacaaa
cagaataagagaataattatgacagcataccatgatgaaagctgctttct
tttattgaatggaacaatgtgtcttttattcttgaggcagggtccctatg
tatcactggctggcctagaactcactatgtagacaaggttggtctcaaat
gtacagagatctgtctgcctctgacttcctattgctgggattcatggcat
gtgtcaccatgcctagccttctagttgctttcagagtcttttttttttta
aaagattagttatttattatatgtaagtaccactgtagtgtgccttcaga
cactccataagagggagtcagatctcattacagatggttgtgagccacca
tatggttgctgggatttgaactcaggaccttcgtaagagcagtcagtgct
cttaactgctgagccatctctccagccctgctttcaggagttcttattgg
tagccttctttcttatggtggtgggggcggatttactgcctacccacatg
gagaatgaaatatgacatagggttaggcctacccattggatctgatgaca
catgttccgaaggagaggtccgtttgtgtctctttatccacactctcttt
atatttttgtgtggcctatgagtaattaaaataaggttcatggaacccag
cccatatggatatggtagagcgggtccccctggtctaacctggaacgacg
tctcccacacccgaaaccctcatccttgggagaaggttaaccaccaccac
cggagtgtgggtctcaccat
tgctttggtgacccacgtcagaataaccagttataggctccgctgatggc
ctggccatttgtgtcacttggtgattacccctgagcagaactgagcagaa
attagacacattccgggtatgagggagatggggaacactttggaagcata
gaaaggtacttccagccatttgtagaatatccgccagaccctcctggaag
attctggggcaagatctgatcagagacagagatgttgtacaggaagaagt
tctggttctcagtcagagatagagtgttcaggaaaaaatggagaggtgac
cagtatatttcaggaaaggtttagatgagagatgagttgggaaaatggca
gcccagagtgcctggagtcggaggacataaaaggcaagaagagctgaaac
cccagctttgtcagccgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56003397_56003838
seq2: B6Ng01-297I19.g_70_511

seq1  GAATTCTGCTTTGGTGACCCACGTCAGAATAACCAGTTATAGGCTCCGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTTGGTGACCCACGTCAGAATAACCAGTTATAGGCTCCGCT  50

seq1  GATGGCCTGGCCATTTGTGTCACTTGGTGATTACCCCTGAGCAGAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTGGCCATTTGTGTCACTTGGTGATTACCCCTGAGCAGAACTGA  100

seq1  GCAGAAATTAGACACATTCCGGGTATGAGGGAGATGGGGAACACTTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATTAGACACATTCCGGGTATGAGGGAGATGGGGAACACTTTGGA  150

seq1  AGCATAGAAAGGTACTTCCAGCCATTTGTAGAATATCCGCCAGACCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAAAGGTACTTCCAGCCATTTGTAGAATATCCGCCAGACCCTCC  200

seq1  TGGAAGATTCTGGGGCAAGATCTGATCAGAGACAGAGATGTTGTACAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATTCTGGGGCAAGATCTGATCAGAGACAGAGATGTTGTACAGGA  250

seq1  AGAAGTTCTGGTTCTCAGTCAGAGATAGAGTGTTCAGGAAAAAATGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCTGGTTCTCAGTCAGAGATAGAGTGTTCAGGAAAAAATGGAGA  300

seq1  GGTGACCAGTATATTTCAGGAAAGGTTTAGATGAGAGATGAGTTGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCAGTATATTTCAGGAAAGGTTTAGATGAGAGATGAGTTGGGAAA  350

seq1  ATGGCAGCCCAGAGTGCCTGGAGTCGGAGGACATAAAAGGCAAGAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCCCAGAGTGCCTGGAGTCGGAGGACATAAAAGGCAAGAAGAGC  400

seq1  TGAAACCCCAGCTTTGTCAGCCGTGTGTGTGTGTGTGTGTGT  442
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCCCAGCTTTGTCAGCCGTGTGTGTGTGTGTGTGTGT  442