BAC Information

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BAC

Clone NameB6Ng01-297M07
Chromosome14 (Build37)
Map Location 58,453,498 - 58,620,409
singlet/doubletdoublet
Overlap geneZdhhc20, Efha1
Upstream geneLOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63
Downstream geneLOC668160, Fgf9, LOC100043554, EG668177, EG668182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297M07.bB6Ng01-297M07.g
ACCGA093048GA093049
length1,1291,160
definitionB6Ng01-297M07.b B6Ng01-297M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,453,498 - 58,454,619)(58,619,262 - 58,620,409)
sequence
gaattcaggtaaacttcccaaatcgcaaagttagaacagcagcgatcttg
atttatgcaggatttggaaatcacagcgctatctttagtataatatttga
tattcagaggacttgacagctacttggtgggtaaataaaaagcaaggtta
tctgcaaacttcagcactgggtaatgttgggagtcctatagtccaactcc
tgcaggatgccttctccacagtcctattgtgcacacagacactgcatagc
cacatcctagacagcagcacatcagagacgtctctctgctggtccacctc
aagcaatcatttgggattgtttcatttctttctttctttctttctttctt
tctttctttctttctttctttttttctttcttttttttttggtttttcaa
gactgggtttctctgtgtagccctggctgtcctggaactcactctgtaga
ccaggccggcctcgaactcagaaatccacctgcctctgcctcccaagtgc
tgggattaaaggcgtgcgccaccacgcctggcgtttgtttctttgataaa
cggtataaaccaaaaatagcatctctacattgccttttgacagaccagtg
gactaatctcctcaatacagccatttctattaaagccactagacgctaaa
aacgtactatcttttaaagagtctatgtgcaccatagtgcacatgtaaat
gccagaggacaatgtgtgggagttaggtatcttcttccagaatgtggctg
atgtcaggtttgtaggtctgagggcaagggcctttatctactgagacatt
tctccagcccaagcctgggacgtcgtggttttgttttacatatttcatcc
ttatctgaactgcattttgagttgctgttgactcggctacaggattcctg
taaacgaccacagtaatttttagaacattgcctaaatgaaatcctattta
atagcatgttgtagtctatcatacttttagggatgaaaatttgtttactt
gtttataatactccttctttcatctctttttttctagtcactccccacct
attcataatatgtgttaaggtcttggaatagccggtgaactctggtgctt
ccctggccataaaaaacttcctggaacac
gaattcccatctgtcgagagtgcaccatgtgccaggcatttggctaatca
cttcctctaagttatcccatttcatttcccatctgaaattgagagggctg
tttacagatgggaaactgagcctcggtgccctaaatcacagtgatgtcag
tggcagggccggaacacaaacagtaaggcctggctgagaggtctatgcac
agtaagtctgcttacttccctgctaggaaggcacggtggaaaggttttgg
cacctgggacaaagtgagaaagttctgacttcacgttagaacatactggc
tggggtggagcaagcacagactaagaaaggataataacaatccaggtggc
ttcctctaacttctcaaattagacttggtatggcagctttcactatttct
ttatttttatttcgttaacccatcgaaatggccattgttgtacatcagga
gttctggcacctctgacatgggcatcaaactgatacacacccaagtaaag
gttctaagtctgaggccaggtcagaggttgaacaaggggaaggttaagtt
tactcagtagcggtaaggaagaattgaggaccccaggctacagaagccaa
gctttctgccaggatgaaatcctttctaccaccaaaagaacatccagccc
tgaggtcgtgttccacatctgccatagagaagatgagcgggggagggaag
agggggctggtgacaggggcatggagcaggtgtgcacctactgttagtcc
catgtgggatcacagctacgagtcaatattttgtaagaacaaaatgtaaa
ggaaacatacaataaatagcaactgtttacaatacagtggctttgtctgg
gagatctgaagaaaatcattgtcagaagtctggatcagatattgtttaac
agaaatgaagaccaggcgctcgggaggagcagacaaacagagataggccc
tttgaaaaggtgttggccagctttgaaagattacaaaaaaaaaaaaaaaa
atcccaaagaaaaataatggctggtcgctaaatgccatgcatagggctct
gacatgcactgaccctgtacatggccaaatgttgtcaaatgcttaacgtt
cctgtacatctaacttcatccaacacccaatttttagagactgagttaga
cagcttcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_58453498_58454619
seq2: B6Ng01-297M07.b_51_1179

seq1  GAATTCA-GTAAACTTCCCAAATCGCAAAGTTAGAACAGCAGCGATCTTG  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTAAACTTCCCAAATCGCAAAGTTAGAACAGCAGCGATCTTG  50

seq1  ATTTATGCAGGATTTGGAAATCACAGCGCTATCTTTAGTATAATATTTGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCAGGATTTGGAAATCACAGCGCTATCTTTAGTATAATATTTGA  100

seq1  TATTCAGAGGACTTGACAGCTACTTGGTGGGTAAATAAAAAGCAAGGTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAGGACTTGACAGCTACTTGGTGGGTAAATAAAAAGCAAGGTTA  150

seq1  TCTGCAAACTTCAGCACTGGGTAATGTTGGGAGTCCTATAGTCCAACTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAACTTCAGCACTGGGTAATGTTGGGAGTCCTATAGTCCAACTCC  200

seq1  TGCAGGATGCCTTCTCCACAGTCCTATTGTGCACACAGACACTGCATAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATGCCTTCTCCACAGTCCTATTGTGCACACAGACACTGCATAGC  250

seq1  CACATCCTAGACAGCAGCACATCAGAGACGTCTCTCTGCTGGTCCACCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTAGACAGCAGCACATCAGAGACGTCTCTCTGCTGGTCCACCTC  300

seq1  AAGCAATCATTTGGGATTGTTTCATTTCTTTCTTTCTTTCTTTCTTTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCATTTGGGATTGTTTCATTTCTTTCTTTCTTTCTTTCTTTCTT  350

seq1  TCTTTCTTTCTTTCTTTCTTTTTTTCTTTCTTTTTTTTTTGGTTTTTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTTTTTCTTTCTTTTTTTTTTGGTTTTTCAA  400

seq1  GACTGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGA  450

seq1  CCAGGCCGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGC  500

seq1  TGGGATTAAAGGCGTGCGCCACCACGCCTGGCGTTTGTTTCTTTGATAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCGTGCGCCACCACGCCTGGCGTTTGTTTCTTTGATAAA  550

seq1  CGGTATAAACCAAAAATAGCATCTCTACATTGCCTTTTGACAGACCAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTATAAACCAAAAATAGCATCTCTACATTGCCTTTTGACAGACCAGTG  600

seq1  GACTAATCTCCTCAATACAGCCATTTCTATTAAAGCCACTAGACGCTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATCTCCTCAATACAGCCATTTCTATTAAAGCCACTAGACGCTAAA  650

seq1  AACGTACTATCTTTTAAAGAGTCTATGTGCACCATAGTGCACATGTAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTACTATCTTTTAAAGAGTCTATGTGCACCATAGTGCACATGTAAAT  700

seq1  GCCAGAGGACAATGTGTGGGAGTTAGGTATCTTCTTCCAGAATGTGGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGACAATGTGTGGGAGTTAGGTATCTTCTTCCAGAATGTGGCTG  750

seq1  ATGTCAGG-TTGTAGGTCTGAGGGCAAGGGCCTTTATCTACTGAGACATT  798
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGTTTGTAGGTCTGAGGGCAAGGGCCTTTATCTACTGAGACATT  800

seq1  TCTCCAGCCCAAGCCTGGGACGTCGTGGTTTTGTTTTACATATTTCATCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCCAAGCCTGGGACGTCGTGGTTTTGTTTTACATATTTCATCC  850

seq1  TTATCTGAACTGCA-TTTGAGTTGCTGTTGACTCGGCTACAGGATTCCTG  897
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTATCTGAACTGCATTTTGAGTTGCTGTTGACTCGGCTACAGGATTCCTG  900

seq1  TAAACGACCACAGTAATTTTTAG-ACATTGCCTAAATGAAATCCTATTTA  946
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAAACGACCACAGTAATTTTTAGAACATTGCCTAAATGAAATCCTATTTA  950

seq1  ATAGCATGTTGTAGTCTAT-ATACTTTTAGGGATGAAAATTTGTTTACTT  995
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAGCATGTTGTAGTCTATCATACTTTTAGGGATGAAAATTTGTTTACTT  1000

seq1  GTTTATAATACTCCTTCTTTCATTCTCTTTTTTTCTAGTCACT-CCCACC  1044
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  GTTTATAATACTCCTTCTTTCA-TCTCTTTTTTTCTAGTCACTCCCCACC  1049

seq1  TATTCAT-ATATGTGTT-AGGTCTTTGGATAGCACGTGAACCTCT-GTGC  1091
      ||||||| ||||||||| ||||||| | |||||  ||||| |||| ||||
seq2  TATTCATAATATGTGTTAAGGTCTTGGAATAGCCGGTGAA-CTCTGGTGC  1098

seq1  TTCCCTGCCCATAAAAACTTCCCTTGAACAC  1122
      ||||||| |||||||||  | ||| ||||||
seq2  TTCCCTGGCCATAAAAAACTTCCTGGAACAC  1129

seq1: chr14_58619262_58620409
seq2: B6Ng01-297M07.g_70_1229 (reverse)

seq1  GATG-AGCTGTCT-ACTCAGCCCCTAAAATTTGGTGTTTGAATGAAGTAA  48
      |||| |||||||| |||||| | |||||| ||||   ||| ||||||| |
seq2  GATGAAGCTGTCTAACTCAGTCTCTAAAAATTGGGTGTTGGATGAAGTTA  50

seq1  AATGTACAGG-ACGTT-AGCATTTTGACAACATTTG--CATGTACA-GGT  93
       ||||||||| ||||| |||| ||||||||||||||  |||||||| |||
seq2  GATGTACAGGAACGTTAAGCA-TTTGACAACATTTGGCCATGTACAGGGT  99

seq1  CAGTGC-TGTCAG-GCCCTATGCATGGCATTTAGC-AACAGCCATTATTT  140
      |||||| |||||| ||||||||||||||||||||| | ||||||||||||
seq2  CAGTGCATGTCAGAGCCCTATGCATGGCATTTAGCGACCAGCCATTATTT  149

seq1  TTCTTTGG--ATTTTTTTTTTTTTTTTGTAATCTTTCAAAGCTGGCCAAC  188
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGGATTTTTTTTTTTTTTTTTGTAATCTTTCAAAGCTGGCCAAC  199

seq1  A-CTTTTC-AAGGGCCTATCTCTGTTTGTCTGCTCCTCCCGAGCGCCTGG  236
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCAAAGGGCCTATCTCTGTTTGTCTGCTCCTCCCGAGCGCCTGG  249

seq1  TCTTTCATTTCTGTTAAACAATATCTGATCCAGACTTCTGACAATGATTT  286
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TTCATTTCTGTTAAACAATATCTGATCCAGACTTCTGACAATGATTT  298

seq1  TCTTCAGATCTCCCAGACAAAGCCACTGTATTGTAAACAGTTGCTATTTA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGATCTCCCAGACAAAGCCACTGTATTGTAAACAGTTGCTATTTA  348

seq1  TTGTATGTTTCCTTTACATTTTGTTCTTACAAAATATTGACTCGTAGCTG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTTTCCTTTACATTTTGTTCTTACAAAATATTGACTCGTAGCTG  398

seq1  TGATCCCACATGGGACTAACAGTAGGTGCACACCTGCTCCATGCCCCTGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCACATGGGACTAACAGTAGGTGCACACCTGCTCCATGCCCCTGT  448

seq1  CACCAGCCCCCTCTTCCCTCCCCCGCTCATCTTCTCTATGGCAGATGTGG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCCCCTCTTCCCTCCCCCGCTCATCTTCTCTATGGCAGATGTGG  498

seq1  AACACGACCTCAGGGCTGGATGTTCTTTTGGTGGTAGAAAGGATTTCATC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGACCTCAGGGCTGGATGTTCTTTTGGTGGTAGAAAGGATTTCATC  548

seq1  CTGGCAGAAAGCTTGGCTTCTGTAGCCTGGGGTCCTCAATTCTTCCTTAC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAAAGCTTGGCTTCTGTAGCCTGGGGTCCTCAATTCTTCCTTAC  598

seq1  CGCTACTGAGTAAACTTAACCTTCCCCTTGTTCAACCTCTGACCTGGCCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACTGAGTAAACTTAACCTTCCCCTTGTTCAACCTCTGACCTGGCCT  648

seq1  CAGACTTAGAACCTTTACTTGGGTGTGTATCAGTTTGATGCCCATGTCAG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTAGAACCTTTACTTGGGTGTGTATCAGTTTGATGCCCATGTCAG  698

seq1  AGGTGCCAGAACTCCTGATGTACAACAATGGCCATTTCGATGGGTTAACG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCAGAACTCCTGATGTACAACAATGGCCATTTCGATGGGTTAACG  748

seq1  AAATAAAAATAAAGAAATAGTGAAAGCTGCCATACCAAGTCTAATTTGAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAAAGAAATAGTGAAAGCTGCCATACCAAGTCTAATTTGAG  798

seq1  AAGTTAGAGGAAGCCACCTGGATTGTTATTATCCTTTCTTAGTCTGTGCT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAGGAAGCCACCTGGATTGTTATTATCCTTTCTTAGTCTGTGCT  848

seq1  TGCTCCACCCCAGCCAGTATGTTCTAACGTGAAGTCAGAACTTTCTCACT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACCCCAGCCAGTATGTTCTAACGTGAAGTCAGAACTTTCTCACT  898

seq1  TTGTCCCAGGTGCCAAAACCTTTCCACCGTGCCTTCCTAGCAGGGAAGTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCAGGTGCCAAAACCTTTCCACCGTGCCTTCCTAGCAGGGAAGTA  948

seq1  AGCAGACTTACTGTGCATAGACCTCTCAGCCAGGCCTTACTGTTTGTGTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTTACTGTGCATAGACCTCTCAGCCAGGCCTTACTGTTTGTGTT  998

seq1  CCGGCCCTGCCACTGACATCACTGTGATTTAGGGCACCGAGGCTCAGTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCCTGCCACTGACATCACTGTGATTTAGGGCACCGAGGCTCAGTTT  1048

seq1  CCCATCTGTAAACAGCCCTCTCAATTTCAGATGGGAAATGAAATGGGATA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGTAAACAGCCCTCTCAATTTCAGATGGGAAATGAAATGGGATA  1098

seq1  ACTTAGAGGAAGTGATTAGCCAAATGCCTGGCACATGGTGCACTCTCGAC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAGGAAGTGATTAGCCAAATGCCTGGCACATGGTGCACTCTCGAC  1148

seq1  AGATGGGAATTC  1148
      ||||||||||||
seq2  AGATGGGAATTC  1160